Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:79621528-79801553

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shc2 10 79618051 to 79637918 19867 - protein coding gene SHC (Src homology 2 domain containing) transforming protein 2
Tssr94354 10 79633604 to 79633609 5 + TSS region transcription start site region 94354
Cpgi1796 10 79636956 to 79638424 1468 CpG island CpG island 1796
Tssr94355 10 79637257 to 79637296 39 + TSS region transcription start site region 94355
Tssr94356 10 79637299 to 79637330 31 + TSS region transcription start site region 94356
Tssr98332 10 79637842 to 79637908 66 - TSS region transcription start site region 98332
Gm47163 10 79637856 to 79639520 1664 + bidirectional promoter lncRNA gene predicted gene, 47163
Tssr98333 10 79637909 to 79637922 13 - TSS region transcription start site region 98333
Cpgi1797 10 79638904 to 79639148 244 CpG island CpG island 1797
Odf3l2 10 79639526 to 79645738 6212 - protein coding gene outer dense fiber of sperm tails 3-like 2
Tssr98334 10 79645732 to 79645744 12 - TSS region transcription start site region 98334
Tssr98335 10 79645749 to 79645762 13 - TSS region transcription start site region 98335
Tssr3268 10 79664374 to 79664383 9 + TSS region transcription start site region 3268
Tssr94357 10 79664553 to 79664564 11 + TSS region transcription start site region 94357
Madcam1 10 79664559 to 79668537 3978 + protein coding gene mucosal vascular addressin cell adhesion molecule 1
Tssr94358 10 79664587 to 79664603 16 + TSS region transcription start site region 94358
Tssr94359 10 79665467 to 79665470 3 + TSS region transcription start site region 94359
Tssr94360 10 79665500 to 79665510 10 + TSS region transcription start site region 94360
Tssr94361 10 79665530 to 79665534 4 + TSS region transcription start site region 94361
Cpgi1798 10 79668987 to 79670392 1405 CpG island CpG island 1798
Tpgs1 10 79669410 to 79676126 6716 + protein coding gene tubulin polyglutamylase complex subunit 1
Tssr94362 10 79669413 to 79669459 46 + TSS region transcription start site region 94362
Tssr94363 10 79669469 to 79669480 11 + TSS region transcription start site region 94363
Tssr94364 10 79669481 to 79669492 11 + TSS region transcription start site region 94364
Tssr94365 10 79669498 to 79669507 9 + TSS region transcription start site region 94365
Tssr94366 10 79669871 to 79669905 34 + TSS region transcription start site region 94366
Tssr98336 10 79671471 to 79671489 18 - TSS region transcription start site region 98336
Cpgi1799 10 79675378 to 79675872 494 CpG island CpG island 1799
Tssr3269 10 79681014 to 79681040 26 + TSS region transcription start site region 3269
Cpgi1800 10 79681273 to 79682856 1583 CpG island CpG island 1800
Tssr94367 10 79681784 to 79681813 29 + TSS region transcription start site region 94367
Tssr3270 10 79681825 to 79681833 8 + TSS region transcription start site region 3270
Tssr94368 10 79682147 to 79682161 14 + TSS region transcription start site region 94368
Tssr94369 10 79682169 to 79682230 61 + TSS region transcription start site region 94369
Cdc34 10 79682195 to 79688398 6203 + protein coding gene cell division cycle 34
Tssr94370 10 79682232 to 79682247 15 + TSS region transcription start site region 94370
Tssr94371 10 79682306 to 79682322 16 + TSS region transcription start site region 94371
Tssr94372 10 79682370 to 79682408 38 + TSS region transcription start site region 94372
Tssr3271 10 79686439 to 79686446 7 + TSS region transcription start site region 3271
Tssr94373 10 79687588 to 79687595 7 + TSS region transcription start site region 94373
Gzmm 10 79689020 to 79695261 6241 + protein coding gene granzyme M (lymphocyte met-ase 1)
Tssr94374 10 79691186 to 79691191 5 + TSS region transcription start site region 94374
Tssr94375 10 79693862 to 79693869 7 + TSS region transcription start site region 94375
Tssr3272 10 79694593 to 79694600 7 + TSS region transcription start site region 3272
Gm25794 10 79703484 to 79703590 106 - snRNA gene predicted gene, 25794
Cpgi1801 10 79704016 to 79705292 1276 CpG island CpG island 1801
Tssr94376 10 79704478 to 79704496 18 + TSS region transcription start site region 94376
Bsg 10 79704491 to 79711969 7478 + protein coding gene basigin
jams1 10 79704491 to 82695872 2991381 heritable phenotypic marker juvenile audiogenic monogenic seizures 1
Tssr94377 10 79704499 to 79704512 13 + TSS region transcription start site region 94377
Cpgi1802 10 79708771 to 79709033 262 CpG island CpG island 1802
Tssr94378 10 79710077 to 79710100 23 + TSS region transcription start site region 94378
Tssr3273 10 79710113 to 79710119 6 + TSS region transcription start site region 3273
Tssr94379 10 79710255 to 79710267 12 + TSS region transcription start site region 94379
Tssr94380 10 79710767 to 79710791 24 + TSS region transcription start site region 94380
Tssr94381 10 79710801 to 79710868 67 + TSS region transcription start site region 94381
Tssr94382 10 79710890 to 79710900 10 + TSS region transcription start site region 94382
Tssr98337 10 79711528 to 79711553 25 - TSS region transcription start site region 98337
Tssr94383 10 79711576 to 79711675 99 + TSS region transcription start site region 94383
Tssr98338 10 79711661 to 79711674 13 - TSS region transcription start site region 98338
Tssr98339 10 79711679 to 79711727 48 - TSS region transcription start site region 98339
Cpgi1803 10 79716183 to 79718393 2210 CpG island CpG island 1803
Gm30480 10 79716192 to 79716908 716 - lncRNA gene predicted gene, 30480
Tssr94384 10 79716588 to 79716666 78 + TSS region transcription start site region 94384
Hcn2 10 79716634 to 79736108 19474 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 2
Tssr94385 10 79728750 to 79728772 22 + TSS region transcription start site region 94385
Cpgi1804 10 79728896 to 79729059 163 CpG island CpG island 1804
Cpgi1805 10 79734706 to 79736816 2110 CpG island CpG island 1805
Polrmt 10 79736123 to 79746581 10458 - protein coding gene polymerase (RNA) mitochondrial (DNA directed)
Cpgi1806 10 79737991 to 79738194 203 CpG island CpG island 1806
Tssr98340 10 79746084 to 79746088 4 - TSS region transcription start site region 98340
Cpgi1807 10 79746293 to 79746765 472 CpG island CpG island 1807
Tssr98341 10 79746553 to 79746586 33 - TSS region transcription start site region 98341
Fgf22 10 79754575 to 79757572 2997 + protein coding gene fibroblast growth factor 22
Cpgi1808 10 79754961 to 79755507 546 CpG island CpG island 1808
Tssr94386 10 79755103 to 79755126 23 + TSS region transcription start site region 94386
Rnf126 10 79758515 to 79766952 8437 - protein coding gene ring finger protein 126
Tssr98342 10 79759176 to 79759227 51 - TSS region transcription start site region 98342
Tssr94387 10 79761024 to 79761035 11 + TSS region transcription start site region 94387
Tssr98343 10 79761050 to 79761085 35 - TSS region transcription start site region 98343
Tssr98344 10 79761495 to 79761496 1 - TSS region transcription start site region 98344
Tssr98345 10 79762509 to 79762536 27 - TSS region transcription start site region 98345
Cpgi1809 10 79766035 to 79767876 1841 CpG island CpG island 1809
Tssr98346 10 79766792 to 79766803 11 - TSS region transcription start site region 98346
Tssr98347 10 79766811 to 79766825 14 - TSS region transcription start site region 98347
Tssr98348 10 79766872 to 79766950 78 - TSS region transcription start site region 98348
Tssr98349 10 79766957 to 79766976 19 - TSS region transcription start site region 98349
Tssr98350 10 79766994 to 79767017 23 - TSS region transcription start site region 98350
Cpgi1810 10 79776819 to 79777599 780 CpG island CpG island 1810
Tssr94388 10 79777261 to 79777280 19 + TSS region transcription start site region 94388
Fstl3 10 79777274 to 79782630 5356 + protein coding gene follistatin-like 3
Tssr94389 10 79777289 to 79777298 9 + TSS region transcription start site region 94389
Cpgi1811 10 79779791 to 79781405 1614 CpG island CpG island 1811
Tssr94390 10 79780972 to 79780984 12 + TSS region transcription start site region 94390
Tssr94391 10 79781152 to 79781161 9 + TSS region transcription start site region 94391
Prss57 10 79781474 to 79790961 9487 - protein coding gene protease, serine 57
Cpgi1812 10 79784340 to 79784681 341 CpG island CpG island 1812
Tssr98351 10 79788924 to 79788984 60 - TSS region transcription start site region 98351
Cpgi1813 10 79793053 to 79794183 1130 CpG island CpG island 1813
Tssr94392 10 79793322 to 79793334 12 + TSS region transcription start site region 94392
Tssr94393 10 79793553 to 79793621 68 + TSS region transcription start site region 94393
Palm 10 79793572 to 79820896 27324 + protein coding gene paralemmin
Tssr94394 10 79793658 to 79793673 15 + TSS region transcription start site region 94394
Tssr94395 10 79793677 to 79793721 44 + TSS region transcription start site region 94395
Gm48495 10 79793781 to 79794656 875 - antisense lncRNA gene predicted gene, 48495
Gm40713 10 79800681 to 79807025 6344 - lncRNA gene predicted gene, 40713