Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:78620758-84300773

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1558 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lvrq4 10 12828307 to 84243920 71415613 QTL liver weight QTL 4
Hrtq3 10 12828307 to 84243920 71415613 QTL heart weight QTL 3
W6q6 10 12828307 to 84243920 71415613 QTL weight 6 weeks QTL 6
Kidpq2 10 12828307 to 84243920 71415613 QTL kidney weight percentage QTL 2
Egq7 10 12828307 to 84243920 71415613 QTL early growth QTL 7
W3q11 10 12828307 to 84243920 71415613 QTL weight 3 weeks QTL 11
W10q5 10 12828307 to 84243920 71415613 QTL weight 10 weeks QTL 5
Scfpq1 10 12828307 to 84243920 71415613 QTL subcutaneous fat pad percentage QTL 1
Angvq1 10 46844307 to 82655287 35810980 QTL angiogenesis by VEGF QTL 1
Cia8 10 51617304 to 82655287 31037983 QTL collagen induced arthritis QTL 8
Obrq12 10 74151384 to 82655287 8503903 QTL obesity resistance QTL 12
Gm7842 10 78628919 to 78630228 1309 - pseudogene predicted gene 7842
Gm47459 10 78629554 to 78632624 3070 + lincRNA gene predicted gene, 47459
D10Mit288 10 78663748 to 78664005 257 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 288
Gm47476 10 78694971 to 78698808 3837 - pseudogene predicted gene, 47476
Gm47495 10 78699609 to 78699873 264 + pseudogene predicted gene, 47495
Casp14 10 78711991 to 78718294 6303 - protein coding gene caspase 14
Tssr98318 10 78712976 to 78712978 2 - TSS region transcription start site region 98318
Tssr98319 10 78718270 to 78718304 34 - TSS region transcription start site region 98319
Ccdc105 10 78746926 to 78753065 6139 - protein coding gene coiled-coil domain containing 105
Cpgi1787 10 78746955 to 78747342 387 CpG island CpG island 1787
Gm30400 10 78747130 to 78767585 20455 + lncRNA gene predicted gene, 30400
Cpgi1788 10 78752276 to 78753163 887 CpG island CpG island 1788
Tssr98320 10 78753046 to 78753076 30 - TSS region transcription start site region 98320
Gm40710 10 78779499 to 78787824 8325 - lncRNA gene predicted gene, 40710
Cpgi1789 10 78779918 to 78780806 888 CpG island CpG island 1789
Tssr94349 10 78780348 to 78780392 44 + TSS region transcription start site region 94349
Tssr94350 10 78780470 to 78780541 71 + TSS region transcription start site region 94350
Slc1a6 10 78780496 to 78814765 34269 + protein coding gene solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
Cpgi1790 10 78787731 to 78788035 304 CpG island CpG island 1790
Olfr1356 10 78846951 to 78847913 962 - protein coding gene olfactory receptor 1356
Olfr1355 10 78875549 to 78880106 4557 + protein coding gene olfactory receptor 1355
Olfr1354 10 78916842 to 78917936 1094 + protein coding gene olfactory receptor 1354
Olfr8 10 78955207 to 78956139 932 + protein coding gene olfactory receptor 8
Olfr1353 10 78963309 to 78970612 7303 + protein coding gene olfactory receptor 1353
Gm47343 10 78972103 to 79012892 40789 - lincRNA gene predicted gene, 47343
Olfr1352 10 78981050 to 78984721 3671 + protein coding gene olfactory receptor 1352
Olfr1351 10 79017324 to 79018283 959 + protein coding gene olfactory receptor 1351
Gm40712 10 79027808 to 79036029 8221 + lncRNA gene predicted gene, 40712
Olfr57 10 79034723 to 79035802 1079 + protein coding gene olfactory receptor 57
2610008E11Rik 10 79064374 to 79097600 33226 - protein coding gene RIKEN cDNA 2610008E11 gene
Tssr98321 10 79093370 to 79093371 1 - TSS region transcription start site region 98321
Cpgi1791 10 79097325 to 79097732 407 CpG island CpG island 1791
Tssr98322 10 79097560 to 79097614 54 - TSS region transcription start site region 98322
Vmn2r80 10 79148816 to 79194933 46117 + protein coding gene vomeronasal 2, receptor 80
Vmn2r81 10 79247777 to 79294535 46758 + protein coding gene vomeronasal 2, receptor 81
Vmn2r82 10 79356591 to 79396766 40175 + protein coding gene vomeronasal 2, receptor 82
Gm47015 10 79412962 to 79417905 4943 - lincRNA gene predicted gene, 47015
Vmn2r83 10 79468958 to 79492154 23196 + protein coding gene vomeronasal 2, receptor 83
Tssr94351 10 79496939 to 79496981 42 + TSS region transcription start site region 94351
Tssr94352 10 79497156 to 79497164 8 + TSS region transcription start site region 94352
Tssr94353 10 79506899 to 79506929 30 + TSS region transcription start site region 94353
Plpp2 10 79526424 to 79533787 7363 - protein coding gene phospholipid phosphatase 2
D10Mit207 10 79528091 to 79528230 139 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 207
D10Mit207.1 10 79528223 to 79528386 163 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 207.1
Mir6909 10 79531029 to 79531090 61 - miRNA gene microRNA 6909
Cpgi1792 10 79533117 to 79534031 914 CpG island CpG island 1792
Tssr98323 10 79533738 to 79533749 11 - TSS region transcription start site region 98323
Tssr98324 10 79533750 to 79533797 47 - TSS region transcription start site region 98324
Mier2 10 79540245 to 79555199 14954 - protein coding gene MIER family member 2
Tssr3267 10 79544321 to 79544343 22 - TSS region transcription start site region 3267
Cpgi1793 10 79554273 to 79555736 1463 CpG island CpG island 1793
Tssr98325 10 79555088 to 79555126 38 - TSS region transcription start site region 98325
Theg 10 79576477 to 79587136 10659 - protein coding gene testicular haploid expressed gene
Tssr98326 10 79587069 to 79587076 7 - TSS region transcription start site region 98326
Tssr98327 10 79587085 to 79587093 8 - TSS region transcription start site region 98327
Tssr98328 10 79587095 to 79587102 7 - TSS region transcription start site region 98328
Tssr98329 10 79587114 to 79587130 16 - TSS region transcription start site region 98329
C2cd4c 10 79606854 to 79614025 7171 - protein coding gene C2 calcium-dependent domain containing 4C
Cpgi1794 10 79612192 to 79613082 890 CpG island CpG island 1794
Cpgi1795 10 79613456 to 79614401 945 CpG island CpG island 1795
Tssr98330 10 79614012 to 79614055 43 - TSS region transcription start site region 98330
Tssr98331 10 79614153 to 79614193 40 - TSS region transcription start site region 98331
Shc2 10 79618051 to 79637918 19867 - protein coding gene SHC (Src homology 2 domain containing) transforming protein 2
Tssr94354 10 79633604 to 79633609 5 + TSS region transcription start site region 94354
Cpgi1796 10 79636956 to 79638424 1468 CpG island CpG island 1796
Tssr94355 10 79637257 to 79637296 39 + TSS region transcription start site region 94355
Tssr94356 10 79637299 to 79637330 31 + TSS region transcription start site region 94356
Tssr98332 10 79637842 to 79637908 66 - TSS region transcription start site region 98332
Gm47163 10 79637856 to 79639520 1664 + bidirectional promoter lncRNA gene predicted gene, 47163
Tssr98333 10 79637909 to 79637922 13 - TSS region transcription start site region 98333
Cpgi1797 10 79638904 to 79639148 244 CpG island CpG island 1797
Odf3l2 10 79639526 to 79645738 6212 - protein coding gene outer dense fiber of sperm tails 3-like 2
Tssr98334 10 79645732 to 79645744 12 - TSS region transcription start site region 98334
Tssr98335 10 79645749 to 79645762 13 - TSS region transcription start site region 98335
Tssr3268 10 79664374 to 79664383 9 + TSS region transcription start site region 3268
Tssr94357 10 79664553 to 79664564 11 + TSS region transcription start site region 94357
Madcam1 10 79664559 to 79668537 3978 + protein coding gene mucosal vascular addressin cell adhesion molecule 1
Tssr94358 10 79664587 to 79664603 16 + TSS region transcription start site region 94358
Tssr94359 10 79665467 to 79665470 3 + TSS region transcription start site region 94359
Tssr94360 10 79665500 to 79665510 10 + TSS region transcription start site region 94360
Tssr94361 10 79665530 to 79665534 4 + TSS region transcription start site region 94361
Cpgi1798 10 79668987 to 79670392 1405 CpG island CpG island 1798
Tpgs1 10 79669410 to 79676126 6716 + protein coding gene tubulin polyglutamylase complex subunit 1
Tssr94362 10 79669413 to 79669459 46 + TSS region transcription start site region 94362
Tssr94363 10 79669469 to 79669480 11 + TSS region transcription start site region 94363
Tssr94364 10 79669481 to 79669492 11 + TSS region transcription start site region 94364
Tssr94365 10 79669498 to 79669507 9 + TSS region transcription start site region 94365
Tssr94366 10 79669871 to 79669905 34 + TSS region transcription start site region 94366
Tssr98336 10 79671471 to 79671489 18 - TSS region transcription start site region 98336
Cpgi1799 10 79675378 to 79675872 494 CpG island CpG island 1799
Tssr3269 10 79681014 to 79681040 26 + TSS region transcription start site region 3269
Cpgi1800 10 79681273 to 79682856 1583 CpG island CpG island 1800
Tssr94367 10 79681784 to 79681813 29 + TSS region transcription start site region 94367
Tssr3270 10 79681825 to 79681833 8 + TSS region transcription start site region 3270
Tssr94368 10 79682147 to 79682161 14 + TSS region transcription start site region 94368
Tssr94369 10 79682169 to 79682230 61 + TSS region transcription start site region 94369
Cdc34 10 79682195 to 79688398 6203 + protein coding gene cell division cycle 34
Tssr94370 10 79682232 to 79682247 15 + TSS region transcription start site region 94370
Tssr94371 10 79682306 to 79682322 16 + TSS region transcription start site region 94371
Tssr94372 10 79682370 to 79682408 38 + TSS region transcription start site region 94372
Tssr3271 10 79686439 to 79686446 7 + TSS region transcription start site region 3271
Tssr94373 10 79687588 to 79687595 7 + TSS region transcription start site region 94373
Gzmm 10 79689020 to 79695261 6241 + protein coding gene granzyme M (lymphocyte met-ase 1)
Tssr94374 10 79691186 to 79691191 5 + TSS region transcription start site region 94374
Tssr94375 10 79693862 to 79693869 7 + TSS region transcription start site region 94375
Tssr3272 10 79694593 to 79694600 7 + TSS region transcription start site region 3272
Gm25794 10 79703484 to 79703590 106 - snRNA gene predicted gene, 25794
Cpgi1801 10 79704016 to 79705292 1276 CpG island CpG island 1801
Tssr94376 10 79704478 to 79704496 18 + TSS region transcription start site region 94376
Bsg 10 79704491 to 79711969 7478 + protein coding gene basigin
jams1 10 79704491 to 82695872 2991381 heritable phenotypic marker juvenile audiogenic monogenic seizures 1
Tssr94377 10 79704499 to 79704512 13 + TSS region transcription start site region 94377
Cpgi1802 10 79708771 to 79709033 262 CpG island CpG island 1802
Tssr94378 10 79710077 to 79710100 23 + TSS region transcription start site region 94378
Tssr3273 10 79710113 to 79710119 6 + TSS region transcription start site region 3273
Tssr94379 10 79710255 to 79710267 12 + TSS region transcription start site region 94379
Tssr94380 10 79710767 to 79710791 24 + TSS region transcription start site region 94380
Tssr94381 10 79710801 to 79710868 67 + TSS region transcription start site region 94381
Tssr94382 10 79710890 to 79710900 10 + TSS region transcription start site region 94382
Tssr98337 10 79711528 to 79711553 25 - TSS region transcription start site region 98337
Tssr94383 10 79711576 to 79711675 99 + TSS region transcription start site region 94383
Tssr98338 10 79711661 to 79711674 13 - TSS region transcription start site region 98338
Tssr98339 10 79711679 to 79711727 48 - TSS region transcription start site region 98339
Cpgi1803 10 79716183 to 79718393 2210 CpG island CpG island 1803
Gm30480 10 79716192 to 79716908 716 - lncRNA gene predicted gene, 30480
Tssr94384 10 79716588 to 79716666 78 + TSS region transcription start site region 94384
Hcn2 10 79716634 to 79736108 19474 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 2
Tssr94385 10 79728750 to 79728772 22 + TSS region transcription start site region 94385
Cpgi1804 10 79728896 to 79729059 163 CpG island CpG island 1804
Cpgi1805 10 79734706 to 79736816 2110 CpG island CpG island 1805
Polrmt 10 79736123 to 79746581 10458 - protein coding gene polymerase (RNA) mitochondrial (DNA directed)
Cpgi1806 10 79737991 to 79738194 203 CpG island CpG island 1806
Tssr98340 10 79746084 to 79746088 4 - TSS region transcription start site region 98340
Cpgi1807 10 79746293 to 79746765 472 CpG island CpG island 1807
Tssr98341 10 79746553 to 79746586 33 - TSS region transcription start site region 98341
Fgf22 10 79754575 to 79757572 2997 + protein coding gene fibroblast growth factor 22
Cpgi1808 10 79754961 to 79755507 546 CpG island CpG island 1808
Tssr94386 10 79755103 to 79755126 23 + TSS region transcription start site region 94386
Rnf126 10 79758515 to 79766952 8437 - protein coding gene ring finger protein 126
Tssr98342 10 79759176 to 79759227 51 - TSS region transcription start site region 98342
Tssr94387 10 79761024 to 79761035 11 + TSS region transcription start site region 94387
Tssr98343 10 79761050 to 79761085 35 - TSS region transcription start site region 98343
Tssr98344 10 79761495 to 79761496 1 - TSS region transcription start site region 98344
Tssr98345 10 79762509 to 79762536 27 - TSS region transcription start site region 98345
Cpgi1809 10 79766035 to 79767876 1841 CpG island CpG island 1809
Tssr98346 10 79766792 to 79766803 11 - TSS region transcription start site region 98346
Tssr98347 10 79766811 to 79766825 14 - TSS region transcription start site region 98347
Tssr98348 10 79766872 to 79766950 78 - TSS region transcription start site region 98348
Tssr98349 10 79766957 to 79766976 19 - TSS region transcription start site region 98349
Tssr98350 10 79766994 to 79767017 23 - TSS region transcription start site region 98350
Cpgi1810 10 79776819 to 79777599 780 CpG island CpG island 1810
Tssr94388 10 79777261 to 79777280 19 + TSS region transcription start site region 94388
Fstl3 10 79777274 to 79782630 5356 + protein coding gene follistatin-like 3
Tssr94389 10 79777289 to 79777298 9 + TSS region transcription start site region 94389
Cpgi1811 10 79779791 to 79781405 1614 CpG island CpG island 1811
Tssr94390 10 79780972 to 79780984 12 + TSS region transcription start site region 94390
Tssr94391 10 79781152 to 79781161 9 + TSS region transcription start site region 94391
Prss57 10 79781474 to 79790961 9487 - protein coding gene protease, serine 57
Cpgi1812 10 79784340 to 79784681 341 CpG island CpG island 1812
Tssr98351 10 79788924 to 79788984 60 - TSS region transcription start site region 98351
Cpgi1813 10 79793053 to 79794183 1130 CpG island CpG island 1813
Tssr94392 10 79793322 to 79793334 12 + TSS region transcription start site region 94392
Tssr94393 10 79793553 to 79793621 68 + TSS region transcription start site region 94393
Palm 10 79793572 to 79820896 27324 + protein coding gene paralemmin
Tssr94394 10 79793658 to 79793673 15 + TSS region transcription start site region 94394
Tssr94395 10 79793677 to 79793721 44 + TSS region transcription start site region 94395
Gm48495 10 79793781 to 79794656 875 - antisense lncRNA gene predicted gene, 48495
Gm40713 10 79800681 to 79807025 6344 - lncRNA gene predicted gene, 40713
Cpgi1814 10 79803729 to 79804128 399 CpG island CpG island 1814
Tssr94396 10 79805986 to 79806005 19 + TSS region transcription start site region 94396
Tssr94397 10 79806012 to 79806031 19 + TSS region transcription start site region 94397
Tssr98352 10 79807068 to 79807099 31 - TSS region transcription start site region 98352
Tssr98353 10 79807110 to 79807135 25 - TSS region transcription start site region 98353
Tssr94398 10 79807262 to 79807277 15 + TSS region transcription start site region 94398
Tssr94399 10 79807282 to 79807320 38 + TSS region transcription start site region 94399
Tssr94400 10 79814586 to 79814623 37 + TSS region transcription start site region 94400
Tssr94401 10 79814666 to 79814684 18 + TSS region transcription start site region 94401
Tssr94402 10 79821006 to 79821029 23 + TSS region transcription start site region 94402
Misp 10 79821019 to 79830452 9433 + protein coding gene mitotic spindle positioning
Tssr94403 10 79822617 to 79822679 62 + TSS region transcription start site region 94403
Tssr94404 10 79824588 to 79824618 30 + TSS region transcription start site region 94404
Tssr94405 10 79824673 to 79824695 22 + TSS region transcription start site region 94405
Tssr94406 10 79824704 to 79824720 16 + TSS region transcription start site region 94406
Tssr94407 10 79826006 to 79826023 17 + TSS region transcription start site region 94407
Tssr94408 10 79826118 to 79826138 20 + TSS region transcription start site region 94408
Tssr94409 10 79826314 to 79826320 6 + TSS region transcription start site region 94409
Tssr94410 10 79840886 to 79840904 18 + TSS region transcription start site region 94410
Tssr98354 10 79849887 to 79849893 6 - TSS region transcription start site region 98354
E130317F20Rik 10 79851381 to 79854971 3590 - bidirectional promoter lncRNA gene RIKEN cDNA E130317F20 gene