Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:78519723-79550802

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47944 10 78501925 to 78520219 18294 - lincRNA gene predicted gene, 47944
Olfr1358 10 78517428 to 78520566 3138 + protein coding gene olfactory receptor 1358
Gm27541 10 78525989 to 78526110 121 + miRNA gene predicted gene, 27541
D10Jhu37 10 78526173 to 78526318 145 DNA segment DNA segment, Chr 10, Johns Hopkins University 37
Tssr94335 10 78542660 to 78542662 2 + TSS region transcription start site region 94335
Gm5951 10 78543276 to 78543779 503 + pseudogene predicted gene 5951
Vmn2r-ps92 10 78554051 to 78554417 366 + pseudogene vomeronasal 2, receptor, pseudogene 92
D10Jhu36 10 78555110 to 78555524 414 DNA segment DNA segment, Chr 10, Johns Hopkins University 36
Cpgi1785 10 78574184 to 78575192 1008 CpG island CpG island 1785
Ilvbl 10 78574346 to 78584502 10156 + protein coding gene ilvB (bacterial acetolactate synthase)-like
Tssr94336 10 78574492 to 78574545 53 + TSS region transcription start site region 94336
Tssr98312 10 78574864 to 78574880 16 - TSS region transcription start site region 98312
Tssr98313 10 78574900 to 78574912 12 - TSS region transcription start site region 98313
Tssr94337 10 78574990 to 78575063 73 + TSS region transcription start site region 94337
Tssr94338 10 78575067 to 78575089 22 + TSS region transcription start site region 94338
Tssr94339 10 78576976 to 78576993 17 + TSS region transcription start site region 94339
Tssr94340 10 78577055 to 78577075 20 + TSS region transcription start site region 94340
Tssr94341 10 78577094 to 78577110 16 + TSS region transcription start site region 94341
Tssr98314 10 78578239 to 78578262 23 - TSS region transcription start site region 98314
Syde1 10 78584503 to 78591964 7461 - protein coding gene synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
Cpgi1786 10 78591490 to 78592134 644 CpG island CpG island 1786
Tssr94342 10 78591664 to 78591692 28 + TSS region transcription start site region 94342
Tssr94343 10 78591695 to 78591712 17 + TSS region transcription start site region 94343
Gm30346 10 78591713 to 78593411 1698 + lncRNA gene predicted gene, 30346
Tssr98315 10 78591887 to 78591934 47 - TSS region transcription start site region 98315
Tssr98316 10 78591935 to 78591942 7 - TSS region transcription start site region 98316
Tssr98317 10 78591945 to 78591953 8 - TSS region transcription start site region 98317
Tssr94344 10 78592035 to 78592037 2 + TSS region transcription start site region 94344
D10Jhu35 10 78595445 to 78595700 255 DNA segment DNA segment, Chr 10, Johns Hopkins University 35
Tssr94345 10 78595498 to 78595509 11 + TSS region transcription start site region 94345
Tssr94346 10 78595510 to 78595583 73 + TSS region transcription start site region 94346
Tssr94347 10 78596564 to 78596569 5 + TSS region transcription start site region 94347
Gm37514 10 78599122 to 78601874 2752 - unclassified gene predicted gene, 37514
Tssr94348 10 78602544 to 78602548 4 + TSS region transcription start site region 94348
Olfr1357 10 78611669 to 78618074 6405 - protein coding gene olfactory receptor 1357
Gm7842 10 78628919 to 78630228 1309 - pseudogene predicted gene 7842
Gm47459 10 78629554 to 78632624 3070 + lincRNA gene predicted gene, 47459
D10Mit288 10 78663748 to 78664005 257 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 288
Gm47476 10 78694971 to 78698808 3837 - pseudogene predicted gene, 47476
Gm47495 10 78699609 to 78699873 264 + pseudogene predicted gene, 47495
Casp14 10 78711991 to 78718294 6303 - protein coding gene caspase 14
Tssr98318 10 78712976 to 78712978 2 - TSS region transcription start site region 98318
Tssr98319 10 78718270 to 78718304 34 - TSS region transcription start site region 98319
Ccdc105 10 78746926 to 78753065 6139 - protein coding gene coiled-coil domain containing 105
Cpgi1787 10 78746955 to 78747342 387 CpG island CpG island 1787
Gm30400 10 78747130 to 78767585 20455 + lncRNA gene predicted gene, 30400
Cpgi1788 10 78752276 to 78753163 887 CpG island CpG island 1788
Tssr98320 10 78753046 to 78753076 30 - TSS region transcription start site region 98320
Gm40710 10 78779499 to 78787824 8325 - lncRNA gene predicted gene, 40710
Cpgi1789 10 78779918 to 78780806 888 CpG island CpG island 1789
Tssr94349 10 78780348 to 78780392 44 + TSS region transcription start site region 94349
Tssr94350 10 78780470 to 78780541 71 + TSS region transcription start site region 94350
Slc1a6 10 78780496 to 78814765 34269 + protein coding gene solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
Cpgi1790 10 78787731 to 78788035 304 CpG island CpG island 1790
Olfr1356 10 78846951 to 78847913 962 - protein coding gene olfactory receptor 1356
Olfr1355 10 78875549 to 78880106 4557 + protein coding gene olfactory receptor 1355
Olfr1354 10 78916842 to 78917936 1094 + protein coding gene olfactory receptor 1354
Olfr8 10 78955207 to 78956139 932 + protein coding gene olfactory receptor 8
Olfr1353 10 78963309 to 78970612 7303 + protein coding gene olfactory receptor 1353
Gm47343 10 78972103 to 79012892 40789 - lincRNA gene predicted gene, 47343
Olfr1352 10 78981050 to 78984721 3671 + protein coding gene olfactory receptor 1352
Olfr1351 10 79017324 to 79018283 959 + protein coding gene olfactory receptor 1351
Gm40712 10 79027808 to 79036029 8221 + lncRNA gene predicted gene, 40712
Olfr57 10 79034723 to 79035802 1079 + protein coding gene olfactory receptor 57
2610008E11Rik 10 79064374 to 79097600 33226 - protein coding gene RIKEN cDNA 2610008E11 gene
Tssr98321 10 79093370 to 79093371 1 - TSS region transcription start site region 98321
Cpgi1791 10 79097325 to 79097732 407 CpG island CpG island 1791
Tssr98322 10 79097560 to 79097614 54 - TSS region transcription start site region 98322
Vmn2r80 10 79148816 to 79194933 46117 + protein coding gene vomeronasal 2, receptor 80
Vmn2r81 10 79247777 to 79294535 46758 + protein coding gene vomeronasal 2, receptor 81
Vmn2r82 10 79356591 to 79396766 40175 + protein coding gene vomeronasal 2, receptor 82
Gm47015 10 79412962 to 79417905 4943 - lincRNA gene predicted gene, 47015
Vmn2r83 10 79468958 to 79492154 23196 + protein coding gene vomeronasal 2, receptor 83
Tssr94351 10 79496939 to 79496981 42 + TSS region transcription start site region 94351
Tssr94352 10 79497156 to 79497164 8 + TSS region transcription start site region 94352
Tssr94353 10 79506899 to 79506929 30 + TSS region transcription start site region 94353
Plpp2 10 79526424 to 79533787 7363 - protein coding gene phospholipid phosphatase 2
D10Mit207 10 79528091 to 79528230 139 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 207
D10Mit207.1 10 79528223 to 79528386 163 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 207.1
Mir6909 10 79531029 to 79531090 61 - miRNA gene microRNA 6909
Cpgi1792 10 79533117 to 79534031 914 CpG island CpG island 1792
Tssr98323 10 79533738 to 79533749 11 - TSS region transcription start site region 98323
Tssr98324 10 79533750 to 79533797 47 - TSS region transcription start site region 98324
Mier2 10 79540245 to 79555199 14954 - protein coding gene MIER family member 2
Tssr3267 10 79544321 to 79544343 22 - TSS region transcription start site region 3267