Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:78376896-81387339

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1176 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(10Prmt2-Pdxk)2Yey 10 76207226 to 78464948 2257722 chromosomal duplication duplication, Chr 10, Y Eugene Yu 2
Del(10Prmt2-Cstb)4Yah 10 76207226 to 78427622 2220396 complex/cluster/region deletion, Chr10, Yann Herault 4
Del(10Prmt2-Pdxk)4Yey 10 76207226 to 78464948 2257722 chromosomal deletion deletion, Chr 10, Y Eugene Yu 4
n-TAagc5 10 78383645 to 78383717 72 - tRNA gene nuclear encoded tRNA alanine 5 (anticodon AGC)
Cpgi1779 10 78392035 to 78392318 283 CpG island CpG island 1779
Tssr94326 10 78393298 to 78393308 10 + TSS region transcription start site region 94326
Gm10146 10 78393320 to 78393628 308 + pseudogene predicted gene 10146
Rrp1 10 78400384 to 78413043 12659 - protein coding gene ribosomal RNA processing 1 homolog (S. cerevisiae)
Tssr94327 10 78400888 to 78400935 47 + TSS region transcription start site region 94327
Tssr98300 10 78403075 to 78403082 7 - TSS region transcription start site region 98300
Tssr94328 10 78404928 to 78404940 12 + TSS region transcription start site region 94328
Tssr98301 10 78405111 to 78405121 10 - TSS region transcription start site region 98301
Mir6907 10 78408475 to 78408545 70 - miRNA gene microRNA 6907
Cpgi1780 10 78412319 to 78413399 1080 CpG island CpG island 1780
Tssr98302 10 78412851 to 78412862 11 - TSS region transcription start site region 98302
Tssr3266 10 78412920 to 78412927 7 - TSS region transcription start site region 3266
Tssr98303 10 78412949 to 78413021 72 - TSS region transcription start site region 98303
Cpgi1781 10 78425465 to 78426039 574 CpG island CpG island 1781
Cstb 10 78425670 to 78427622 1952 + protein coding gene cystatin B
Tssr94329 10 78425690 to 78425729 39 + TSS region transcription start site region 94329
Tssr94330 10 78425731 to 78425747 16 + TSS region transcription start site region 94330
Tssr94331 10 78427341 to 78427401 60 + TSS region transcription start site region 94331
Tssr98304 10 78427470 to 78427485 15 - TSS region transcription start site region 98304
Tssr98305 10 78427615 to 78427623 8 - TSS region transcription start site region 98305
4921516A02Rik 10 78428271 to 78438847 10576 + antisense lncRNA gene RIKEN cDNA 4921516A02 gene
Mir6410 10 78434799 to 78434902 103 + miRNA gene microRNA 6410
Pdxk 10 78436747 to 78464948 28201 - protein coding gene pyridoxal (pyridoxine, vitamin B6) kinase
Tssr98306 10 78439204 to 78439226 22 - TSS region transcription start site region 98306
Tssr98307 10 78439696 to 78439711 15 - TSS region transcription start site region 98307
Tssr98308 10 78440779 to 78440804 25 - TSS region transcription start site region 98308
Mir6908 10 78445095 to 78445157 62 - miRNA gene microRNA 6908
D10Jhu33 10 78445689 to 78445813 124 DNA segment DNA segment, Chr 10, Johns Hopkins University 33
Cpgi1782 10 78464380 to 78465394 1014 CpG island CpG island 1782
Tssr98309 10 78464887 to 78464944 57 - TSS region transcription start site region 98309
Tssr98310 10 78464945 to 78464965 20 - TSS region transcription start site region 98310
Tssr98311 10 78464969 to 78464987 18 - TSS region transcription start site region 98311
Tssr94332 10 78465164 to 78465190 26 + TSS region transcription start site region 94332
Tssr94333 10 78465200 to 78465216 16 + TSS region transcription start site region 94333
Tssr94334 10 78465436 to 78465476 40 + TSS region transcription start site region 94334
D10Jhu38 10 78465567 to 78465853 286 DNA segment DNA segment, Chr 10, Johns Hopkins University 38
4933436P19Rik 10 78469815 to 78471256 1441 - unclassified gene RIKEN cDNA 4933436P19 gene
Cpgi1783 10 78481689 to 78482486 797 CpG island CpG island 1783
Gm9978 10 78484570 to 78487842 3272 - protein coding gene predicted gene 9978
Gm30232 10 78487088 to 78493520 6432 + lncRNA gene predicted gene, 30232
Cpgi1784 10 78487568 to 78487985 417 CpG island CpG island 1784
Gm47944 10 78501925 to 78520219 18294 - lincRNA gene predicted gene, 47944
D10Jhu34e 10 78504725 to 78504910 185 DNA segment DNA segment, Chr 10, Johns Hopkins University 34 expressed
Olfr1358 10 78517428 to 78520566 3138 + protein coding gene olfactory receptor 1358
Gm25164 10 78518623 to 78518738 115 + rRNA gene predicted gene, 25164
Gm27541 10 78525989 to 78526110 121 + miRNA gene predicted gene, 27541
D10Jhu37 10 78526173 to 78526318 145 DNA segment DNA segment, Chr 10, Johns Hopkins University 37
Tssr94335 10 78542660 to 78542662 2 + TSS region transcription start site region 94335
Gm5951 10 78543276 to 78543779 503 + pseudogene predicted gene 5951
Vmn2r-ps92 10 78554051 to 78554417 366 + pseudogene vomeronasal 2, receptor, pseudogene 92
D10Jhu36 10 78555110 to 78555524 414 DNA segment DNA segment, Chr 10, Johns Hopkins University 36
Cpgi1785 10 78574184 to 78575192 1008 CpG island CpG island 1785
Ilvbl 10 78574346 to 78584502 10156 + protein coding gene ilvB (bacterial acetolactate synthase)-like
Tssr94336 10 78574492 to 78574545 53 + TSS region transcription start site region 94336
Tssr98312 10 78574864 to 78574880 16 - TSS region transcription start site region 98312
Tssr98313 10 78574900 to 78574912 12 - TSS region transcription start site region 98313
Tssr94337 10 78574990 to 78575063 73 + TSS region transcription start site region 94337
Tssr94338 10 78575067 to 78575089 22 + TSS region transcription start site region 94338
Tssr94339 10 78576976 to 78576993 17 + TSS region transcription start site region 94339
Tssr94340 10 78577055 to 78577075 20 + TSS region transcription start site region 94340
Tssr94341 10 78577094 to 78577110 16 + TSS region transcription start site region 94341
Tssr98314 10 78578239 to 78578262 23 - TSS region transcription start site region 98314
Syde1 10 78584503 to 78591964 7461 - protein coding gene synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
Cpgi1786 10 78591490 to 78592134 644 CpG island CpG island 1786
Tssr94342 10 78591664 to 78591692 28 + TSS region transcription start site region 94342
Tssr94343 10 78591695 to 78591712 17 + TSS region transcription start site region 94343
Gm30346 10 78591713 to 78593411 1698 + lncRNA gene predicted gene, 30346
Tssr98315 10 78591887 to 78591934 47 - TSS region transcription start site region 98315
Tssr98316 10 78591935 to 78591942 7 - TSS region transcription start site region 98316
Tssr98317 10 78591945 to 78591953 8 - TSS region transcription start site region 98317
Tssr94344 10 78592035 to 78592037 2 + TSS region transcription start site region 94344
D10Jhu35 10 78595445 to 78595700 255 DNA segment DNA segment, Chr 10, Johns Hopkins University 35
Tssr94345 10 78595498 to 78595509 11 + TSS region transcription start site region 94345
Tssr94346 10 78595510 to 78595583 73 + TSS region transcription start site region 94346
Tssr94347 10 78596564 to 78596569 5 + TSS region transcription start site region 94347
Gm37514 10 78599122 to 78601874 2752 - unclassified gene predicted gene, 37514
Tssr94348 10 78602544 to 78602548 4 + TSS region transcription start site region 94348
Olfr1357 10 78611669 to 78618074 6405 - protein coding gene olfactory receptor 1357
Gm7842 10 78628919 to 78630228 1309 - pseudogene predicted gene 7842
Gm47459 10 78629554 to 78632624 3070 + lincRNA gene predicted gene, 47459
D10Mit288 10 78663748 to 78664005 257 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 288
Gm47476 10 78694971 to 78698808 3837 - pseudogene predicted gene, 47476
Gm47495 10 78699609 to 78699873 264 + pseudogene predicted gene, 47495
Casp14 10 78711991 to 78718294 6303 - protein coding gene caspase 14
Tssr98318 10 78712976 to 78712978 2 - TSS region transcription start site region 98318
Tssr98319 10 78718270 to 78718304 34 - TSS region transcription start site region 98319
Ccdc105 10 78746926 to 78753065 6139 - protein coding gene coiled-coil domain containing 105
Cpgi1787 10 78746955 to 78747342 387 CpG island CpG island 1787
Gm30400 10 78747130 to 78767585 20455 + lncRNA gene predicted gene, 30400
Cpgi1788 10 78752276 to 78753163 887 CpG island CpG island 1788
Tssr98320 10 78753046 to 78753076 30 - TSS region transcription start site region 98320
Gm40710 10 78779499 to 78787824 8325 - lncRNA gene predicted gene, 40710
Cpgi1789 10 78779918 to 78780806 888 CpG island CpG island 1789
Tssr94349 10 78780348 to 78780392 44 + TSS region transcription start site region 94349
Tssr94350 10 78780470 to 78780541 71 + TSS region transcription start site region 94350
Slc1a6 10 78780496 to 78814765 34269 + protein coding gene solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
Cpgi1790 10 78787731 to 78788035 304 CpG island CpG island 1790
Olfr1356 10 78846951 to 78847913 962 - protein coding gene olfactory receptor 1356
Olfr1355 10 78875549 to 78880106 4557 + protein coding gene olfactory receptor 1355
Olfr1354 10 78916842 to 78917936 1094 + protein coding gene olfactory receptor 1354
Olfr8 10 78955207 to 78956139 932 + protein coding gene olfactory receptor 8
Olfr1353 10 78963309 to 78970612 7303 + protein coding gene olfactory receptor 1353
Gm47343 10 78972103 to 79012892 40789 - lincRNA gene predicted gene, 47343
Olfr1352 10 78981050 to 78984721 3671 + protein coding gene olfactory receptor 1352
Olfr1351 10 79017324 to 79018283 959 + protein coding gene olfactory receptor 1351
Gm40712 10 79027808 to 79036029 8221 + lncRNA gene predicted gene, 40712
Olfr57 10 79034723 to 79035802 1079 + protein coding gene olfactory receptor 57
2610008E11Rik 10 79064374 to 79097600 33226 - protein coding gene RIKEN cDNA 2610008E11 gene
Tssr98321 10 79093370 to 79093371 1 - TSS region transcription start site region 98321
Cpgi1791 10 79097325 to 79097732 407 CpG island CpG island 1791
Tssr98322 10 79097560 to 79097614 54 - TSS region transcription start site region 98322
Vmn2r80 10 79148816 to 79194933 46117 + protein coding gene vomeronasal 2, receptor 80
Vmn2r81 10 79247777 to 79294535 46758 + protein coding gene vomeronasal 2, receptor 81
Vmn2r82 10 79356591 to 79396766 40175 + protein coding gene vomeronasal 2, receptor 82
Gm47015 10 79412962 to 79417905 4943 - lincRNA gene predicted gene, 47015
Vmn2r83 10 79468958 to 79492154 23196 + protein coding gene vomeronasal 2, receptor 83
Tssr94351 10 79496939 to 79496981 42 + TSS region transcription start site region 94351
Tssr94352 10 79497156 to 79497164 8 + TSS region transcription start site region 94352
Tssr94353 10 79506899 to 79506929 30 + TSS region transcription start site region 94353
Plpp2 10 79526424 to 79533787 7363 - protein coding gene phospholipid phosphatase 2
D10Mit207 10 79528091 to 79528230 139 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 207
D10Mit207.1 10 79528223 to 79528386 163 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 207.1
Mir6909 10 79531029 to 79531090 61 - miRNA gene microRNA 6909
Cpgi1792 10 79533117 to 79534031 914 CpG island CpG island 1792
Tssr98323 10 79533738 to 79533749 11 - TSS region transcription start site region 98323
Tssr98324 10 79533750 to 79533797 47 - TSS region transcription start site region 98324
Mier2 10 79540245 to 79555199 14954 - protein coding gene MIER family member 2
Tssr3267 10 79544321 to 79544343 22 - TSS region transcription start site region 3267
Cpgi1793 10 79554273 to 79555736 1463 CpG island CpG island 1793
Tssr98325 10 79555088 to 79555126 38 - TSS region transcription start site region 98325
Theg 10 79576477 to 79587136 10659 - protein coding gene testicular haploid expressed gene
Tssr98326 10 79587069 to 79587076 7 - TSS region transcription start site region 98326
Tssr98327 10 79587085 to 79587093 8 - TSS region transcription start site region 98327
Tssr98328 10 79587095 to 79587102 7 - TSS region transcription start site region 98328
Tssr98329 10 79587114 to 79587130 16 - TSS region transcription start site region 98329
C2cd4c 10 79606854 to 79614025 7171 - protein coding gene C2 calcium-dependent domain containing 4C
Cpgi1794 10 79612192 to 79613082 890 CpG island CpG island 1794
Cpgi1795 10 79613456 to 79614401 945 CpG island CpG island 1795
Tssr98330 10 79614012 to 79614055 43 - TSS region transcription start site region 98330
Tssr98331 10 79614153 to 79614193 40 - TSS region transcription start site region 98331
Shc2 10 79618051 to 79637918 19867 - protein coding gene SHC (Src homology 2 domain containing) transforming protein 2
Tssr94354 10 79633604 to 79633609 5 + TSS region transcription start site region 94354
Cpgi1796 10 79636956 to 79638424 1468 CpG island CpG island 1796
Tssr94355 10 79637257 to 79637296 39 + TSS region transcription start site region 94355
Tssr94356 10 79637299 to 79637330 31 + TSS region transcription start site region 94356
Tssr98332 10 79637842 to 79637908 66 - TSS region transcription start site region 98332
Gm47163 10 79637856 to 79639520 1664 + bidirectional promoter lncRNA gene predicted gene, 47163
Tssr98333 10 79637909 to 79637922 13 - TSS region transcription start site region 98333
Cpgi1797 10 79638904 to 79639148 244 CpG island CpG island 1797
Odf3l2 10 79639526 to 79645738 6212 - protein coding gene outer dense fiber of sperm tails 3-like 2
Tssr98334 10 79645732 to 79645744 12 - TSS region transcription start site region 98334
Tssr98335 10 79645749 to 79645762 13 - TSS region transcription start site region 98335
Tssr3268 10 79664374 to 79664383 9 + TSS region transcription start site region 3268
Tssr94357 10 79664553 to 79664564 11 + TSS region transcription start site region 94357
Madcam1 10 79664559 to 79668537 3978 + protein coding gene mucosal vascular addressin cell adhesion molecule 1
Tssr94358 10 79664587 to 79664603 16 + TSS region transcription start site region 94358
Tssr94359 10 79665467 to 79665470 3 + TSS region transcription start site region 94359
Tssr94360 10 79665500 to 79665510 10 + TSS region transcription start site region 94360
Tssr94361 10 79665530 to 79665534 4 + TSS region transcription start site region 94361
Cpgi1798 10 79668987 to 79670392 1405 CpG island CpG island 1798
Tpgs1 10 79669410 to 79676126 6716 + protein coding gene tubulin polyglutamylase complex subunit 1
Tssr94362 10 79669413 to 79669459 46 + TSS region transcription start site region 94362
Tssr94363 10 79669469 to 79669480 11 + TSS region transcription start site region 94363
Tssr94364 10 79669481 to 79669492 11 + TSS region transcription start site region 94364
Tssr94365 10 79669498 to 79669507 9 + TSS region transcription start site region 94365
Tssr94366 10 79669871 to 79669905 34 + TSS region transcription start site region 94366
Tssr98336 10 79671471 to 79671489 18 - TSS region transcription start site region 98336
Cpgi1799 10 79675378 to 79675872 494 CpG island CpG island 1799
Tssr3269 10 79681014 to 79681040 26 + TSS region transcription start site region 3269
Cpgi1800 10 79681273 to 79682856 1583 CpG island CpG island 1800
Tssr94367 10 79681784 to 79681813 29 + TSS region transcription start site region 94367
Tssr3270 10 79681825 to 79681833 8 + TSS region transcription start site region 3270
Tssr94368 10 79682147 to 79682161 14 + TSS region transcription start site region 94368
Tssr94369 10 79682169 to 79682230 61 + TSS region transcription start site region 94369
Cdc34 10 79682195 to 79688398 6203 + protein coding gene cell division cycle 34
Tssr94370 10 79682232 to 79682247 15 + TSS region transcription start site region 94370
Tssr94371 10 79682306 to 79682322 16 + TSS region transcription start site region 94371
Tssr94372 10 79682370 to 79682408 38 + TSS region transcription start site region 94372
Tssr3271 10 79686439 to 79686446 7 + TSS region transcription start site region 3271
Tssr94373 10 79687588 to 79687595 7 + TSS region transcription start site region 94373
Gzmm 10 79689020 to 79695261 6241 + protein coding gene granzyme M (lymphocyte met-ase 1)
Tssr94374 10 79691186 to 79691191 5 + TSS region transcription start site region 94374
Tssr94375 10 79693862 to 79693869 7 + TSS region transcription start site region 94375
Tssr3272 10 79694593 to 79694600 7 + TSS region transcription start site region 3272
Gm25794 10 79703484 to 79703590 106 - snRNA gene predicted gene, 25794
Cpgi1801 10 79704016 to 79705292 1276 CpG island CpG island 1801
Tssr94376 10 79704478 to 79704496 18 + TSS region transcription start site region 94376
Bsg 10 79704491 to 79711969 7478 + protein coding gene basigin
jams1 10 79704491 to 82695872 2991381 heritable phenotypic marker juvenile audiogenic monogenic seizures 1
Tssr94377 10 79704499 to 79704512 13 + TSS region transcription start site region 94377
Cpgi1802 10 79708771 to 79709033 262 CpG island CpG island 1802
Tssr94378 10 79710077 to 79710100 23 + TSS region transcription start site region 94378
Tssr3273 10 79710113 to 79710119 6 + TSS region transcription start site region 3273
Tssr94379 10 79710255 to 79710267 12 + TSS region transcription start site region 94379
Tssr94380 10 79710767 to 79710791 24 + TSS region transcription start site region 94380
Tssr94381 10 79710801 to 79710868 67 + TSS region transcription start site region 94381