Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:78256639-78448073

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(10Prmt2-Cstb)4Yah 10 76207226 to 78427622 2220396 complex/cluster/region deletion, Chr10, Yann Herault 4
Gm30122 10 78248880 to 78264096 15216 - lincRNA gene predicted gene, 30122
Gm47976 10 78264531 to 78266075 1544 - unclassified gene predicted gene, 47976
Agpat3 10 78269174 to 78352484 83310 - protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 3
Tssr98273 10 78283122 to 78283139 17 - TSS region transcription start site region 98273
Tssr98274 10 78295383 to 78295388 5 - TSS region transcription start site region 98274
Tssr98275 10 78295397 to 78295418 21 - TSS region transcription start site region 98275
Tssr98276 10 78295419 to 78295422 3 - TSS region transcription start site region 98276
Tssr98277 10 78297852 to 78297863 11 - TSS region transcription start site region 98277
Tssr98278 10 78297891 to 78297902 11 - TSS region transcription start site region 98278
Tssr98279 10 78297915 to 78297986 71 - TSS region transcription start site region 98279
Tssr98280 10 78297993 to 78297998 5 - TSS region transcription start site region 98280
Tssr98281 10 78298135 to 78298146 11 - TSS region transcription start site region 98281
Tssr98282 10 78298162 to 78298184 22 - TSS region transcription start site region 98282
Tssr98283 10 78298192 to 78298203 11 - TSS region transcription start site region 98283
Tssr98284 10 78298256 to 78298266 10 - TSS region transcription start site region 98284
Tssr98285 10 78298292 to 78298327 35 - TSS region transcription start site region 98285
Tssr94322 10 78298310 to 78298317 7 + TSS region transcription start site region 94322
Gm47992 10 78298315 to 78300301 1986 + unclassified gene predicted gene, 47992
Tssr98286 10 78307369 to 78307393 24 - TSS region transcription start site region 98286
Tssr98287 10 78307603 to 78307619 16 - TSS region transcription start site region 98287
Tssr98288 10 78311984 to 78312005 21 - TSS region transcription start site region 98288
Tssr98289 10 78312015 to 78312030 15 - TSS region transcription start site region 98289
n-R5s77 10 78314165 to 78314283 118 + rRNA gene nuclear encoded rRNA 5S 77
Tssr98290 10 78320704 to 78320707 3 - TSS region transcription start site region 98290
D10Mit175 10 78327873 to 78327981 108 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 175
Mir7659 10 78340150 to 78340207 57 - miRNA gene microRNA 7659
Cpgi1777 10 78351639 to 78353073 1434 CpG island CpG island 1777
Tssr98291 10 78351690 to 78351708 18 - TSS region transcription start site region 98291
Tssr98292 10 78351711 to 78351722 11 - TSS region transcription start site region 98292
Tssr98293 10 78352064 to 78352067 3 - TSS region transcription start site region 98293
Tssr98294 10 78352077 to 78352095 18 - TSS region transcription start site region 98294
Tssr98295 10 78352097 to 78352114 17 - TSS region transcription start site region 98295
Tssr98296 10 78352289 to 78352317 28 - TSS region transcription start site region 98296
Tssr98297 10 78352323 to 78352459 136 - TSS region transcription start site region 98297
Tssr98298 10 78352469 to 78352515 46 - TSS region transcription start site region 98298
Tssr94323 10 78352522 to 78352536 14 + TSS region transcription start site region 94323
Gm40709 10 78352541 to 78355640 3099 + bidirectional promoter lncRNA gene predicted gene, 40709
Tssr94324 10 78352543 to 78352548 5 + TSS region transcription start site region 94324
Tssr94325 10 78352562 to 78352568 6 + TSS region transcription start site region 94325
Tssr98299 10 78353637 to 78353645 8 - TSS region transcription start site region 98299
Gm22514 10 78370013 to 78370320 307 - unclassified non-coding RNA gene predicted gene, 22514
Cpgi1778 10 78373094 to 78373304 210 CpG island CpG island 1778
n-TAagc5 10 78383645 to 78383717 72 - tRNA gene nuclear encoded tRNA alanine 5 (anticodon AGC)
Cpgi1779 10 78392035 to 78392318 283 CpG island CpG island 1779
Tssr94326 10 78393298 to 78393308 10 + TSS region transcription start site region 94326
Gm10146 10 78393320 to 78393628 308 + pseudogene predicted gene 10146
Rrp1 10 78400384 to 78413043 12659 - protein coding gene ribosomal RNA processing 1 homolog (S. cerevisiae)
Tssr94327 10 78400888 to 78400935 47 + TSS region transcription start site region 94327
Tssr98300 10 78403075 to 78403082 7 - TSS region transcription start site region 98300
Tssr94328 10 78404928 to 78404940 12 + TSS region transcription start site region 94328
Tssr98301 10 78405111 to 78405121 10 - TSS region transcription start site region 98301
Mir6907 10 78408475 to 78408545 70 - miRNA gene microRNA 6907
Cpgi1780 10 78412319 to 78413399 1080 CpG island CpG island 1780
Tssr98302 10 78412851 to 78412862 11 - TSS region transcription start site region 98302
Tssr3266 10 78412920 to 78412927 7 - TSS region transcription start site region 3266
Tssr98303 10 78412949 to 78413021 72 - TSS region transcription start site region 98303
Cpgi1781 10 78425465 to 78426039 574 CpG island CpG island 1781
Cstb 10 78425670 to 78427622 1952 + protein coding gene cystatin B
Tssr94329 10 78425690 to 78425729 39 + TSS region transcription start site region 94329
Tssr94330 10 78425731 to 78425747 16 + TSS region transcription start site region 94330
Tssr94331 10 78427341 to 78427401 60 + TSS region transcription start site region 94331
Tssr98304 10 78427470 to 78427485 15 - TSS region transcription start site region 98304
Tssr98305 10 78427615 to 78427623 8 - TSS region transcription start site region 98305
4921516A02Rik 10 78428271 to 78438847 10576 + antisense lncRNA gene RIKEN cDNA 4921516A02 gene
Mir6410 10 78434799 to 78434902 103 + miRNA gene microRNA 6410
Pdxk 10 78436747 to 78464948 28201 - protein coding gene pyridoxal (pyridoxine, vitamin B6) kinase
Tssr98306 10 78439204 to 78439226 22 - TSS region transcription start site region 98306
Tssr98307 10 78439696 to 78439711 15 - TSS region transcription start site region 98307
Tssr98308 10 78440779 to 78440804 25 - TSS region transcription start site region 98308
Mir6908 10 78445095 to 78445157 62 - miRNA gene microRNA 6908
D10Jhu33 10 78445689 to 78445813 124 DNA segment DNA segment, Chr 10, Johns Hopkins University 33