Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:78187077-78517095

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(10Prmt2-Pdxk)4Yey 10 76207226 to 78464948 2257722 chromosomal deletion deletion, Chr 10, Y Eugene Yu 4
Del(10Prmt2-Cstb)4Yah 10 76207226 to 78427622 2220396 complex/cluster/region deletion, Chr10, Yann Herault 4
Dp(10Prmt2-Pdxk)2Yey 10 76207226 to 78464948 2257722 chromosomal duplication duplication, Chr 10, Y Eugene Yu 2
Trappc10 10 78186725 to 78244641 57916 - protein coding gene trafficking protein particle complex 10
D10Mit139 10 78232660 to 78232805 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 139
D10Mit139.1 10 78232774 to 78232886 112 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 139.1
Tssr98271 10 78234736 to 78234740 4 - TSS region transcription start site region 98271
D10Mit260 10 78235707 to 78235954 247 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 260
Cpgi1776 10 78243883 to 78245339 1456 CpG island CpG island 1776
Tssr98272 10 78244602 to 78244676 74 - TSS region transcription start site region 98272
Gm40708 10 78246624 to 78255434 8810 + lncRNA gene predicted gene, 40708
Gm30122 10 78248880 to 78264096 15216 - lincRNA gene predicted gene, 30122
Gm47976 10 78264531 to 78266075 1544 - unclassified gene predicted gene, 47976
Agpat3 10 78269174 to 78352484 83310 - protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 3
Tssr98273 10 78283122 to 78283139 17 - TSS region transcription start site region 98273
Tssr98274 10 78295383 to 78295388 5 - TSS region transcription start site region 98274
Tssr98275 10 78295397 to 78295418 21 - TSS region transcription start site region 98275
Tssr98276 10 78295419 to 78295422 3 - TSS region transcription start site region 98276
Tssr98277 10 78297852 to 78297863 11 - TSS region transcription start site region 98277
Tssr98278 10 78297891 to 78297902 11 - TSS region transcription start site region 98278
Tssr98279 10 78297915 to 78297986 71 - TSS region transcription start site region 98279
Tssr98280 10 78297993 to 78297998 5 - TSS region transcription start site region 98280
Tssr98281 10 78298135 to 78298146 11 - TSS region transcription start site region 98281
Tssr98282 10 78298162 to 78298184 22 - TSS region transcription start site region 98282
Tssr98283 10 78298192 to 78298203 11 - TSS region transcription start site region 98283
Tssr98284 10 78298256 to 78298266 10 - TSS region transcription start site region 98284
Tssr98285 10 78298292 to 78298327 35 - TSS region transcription start site region 98285
Tssr94322 10 78298310 to 78298317 7 + TSS region transcription start site region 94322
Gm47992 10 78298315 to 78300301 1986 + unclassified gene predicted gene, 47992
Tssr98286 10 78307369 to 78307393 24 - TSS region transcription start site region 98286
Tssr98287 10 78307603 to 78307619 16 - TSS region transcription start site region 98287
Tssr98288 10 78311984 to 78312005 21 - TSS region transcription start site region 98288
Tssr98289 10 78312015 to 78312030 15 - TSS region transcription start site region 98289
n-R5s77 10 78314165 to 78314283 118 + rRNA gene nuclear encoded rRNA 5S 77
Tssr98290 10 78320704 to 78320707 3 - TSS region transcription start site region 98290
D10Mit175 10 78327873 to 78327981 108 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 175
Mir7659 10 78340150 to 78340207 57 - miRNA gene microRNA 7659
Cpgi1777 10 78351639 to 78353073 1434 CpG island CpG island 1777
Tssr98291 10 78351690 to 78351708 18 - TSS region transcription start site region 98291
Tssr98292 10 78351711 to 78351722 11 - TSS region transcription start site region 98292
Tssr98293 10 78352064 to 78352067 3 - TSS region transcription start site region 98293
Tssr98294 10 78352077 to 78352095 18 - TSS region transcription start site region 98294
Tssr98295 10 78352097 to 78352114 17 - TSS region transcription start site region 98295
Tssr98296 10 78352289 to 78352317 28 - TSS region transcription start site region 98296
Tssr98297 10 78352323 to 78352459 136 - TSS region transcription start site region 98297
Tssr98298 10 78352469 to 78352515 46 - TSS region transcription start site region 98298
Tssr94323 10 78352522 to 78352536 14 + TSS region transcription start site region 94323
Gm40709 10 78352541 to 78355640 3099 + bidirectional promoter lncRNA gene predicted gene, 40709
Tssr94324 10 78352543 to 78352548 5 + TSS region transcription start site region 94324
Tssr94325 10 78352562 to 78352568 6 + TSS region transcription start site region 94325
Tssr98299 10 78353637 to 78353645 8 - TSS region transcription start site region 98299
Gm22514 10 78370013 to 78370320 307 - unclassified non-coding RNA gene predicted gene, 22514
Cpgi1778 10 78373094 to 78373304 210 CpG island CpG island 1778
n-TAagc5 10 78383645 to 78383717 72 - tRNA gene nuclear encoded tRNA alanine 5 (anticodon AGC)
Cpgi1779 10 78392035 to 78392318 283 CpG island CpG island 1779
Tssr94326 10 78393298 to 78393308 10 + TSS region transcription start site region 94326
Gm10146 10 78393320 to 78393628 308 + pseudogene predicted gene 10146
Rrp1 10 78400384 to 78413043 12659 - protein coding gene ribosomal RNA processing 1 homolog (S. cerevisiae)
Tssr94327 10 78400888 to 78400935 47 + TSS region transcription start site region 94327
Tssr98300 10 78403075 to 78403082 7 - TSS region transcription start site region 98300
Tssr94328 10 78404928 to 78404940 12 + TSS region transcription start site region 94328
Tssr98301 10 78405111 to 78405121 10 - TSS region transcription start site region 98301
Mir6907 10 78408475 to 78408545 70 - miRNA gene microRNA 6907
Cpgi1780 10 78412319 to 78413399 1080 CpG island CpG island 1780
Tssr98302 10 78412851 to 78412862 11 - TSS region transcription start site region 98302
Tssr3266 10 78412920 to 78412927 7 - TSS region transcription start site region 3266
Tssr98303 10 78412949 to 78413021 72 - TSS region transcription start site region 98303
Cpgi1781 10 78425465 to 78426039 574 CpG island CpG island 1781
Cstb 10 78425670 to 78427622 1952 + protein coding gene cystatin B
Tssr94329 10 78425690 to 78425729 39 + TSS region transcription start site region 94329
Tssr94330 10 78425731 to 78425747 16 + TSS region transcription start site region 94330
Tssr94331 10 78427341 to 78427401 60 + TSS region transcription start site region 94331
Tssr98304 10 78427470 to 78427485 15 - TSS region transcription start site region 98304
Tssr98305 10 78427615 to 78427623 8 - TSS region transcription start site region 98305
4921516A02Rik 10 78428271 to 78438847 10576 + antisense lncRNA gene RIKEN cDNA 4921516A02 gene
Mir6410 10 78434799 to 78434902 103 + miRNA gene microRNA 6410
Pdxk 10 78436747 to 78464948 28201 - protein coding gene pyridoxal (pyridoxine, vitamin B6) kinase
Tssr98306 10 78439204 to 78439226 22 - TSS region transcription start site region 98306
Tssr98307 10 78439696 to 78439711 15 - TSS region transcription start site region 98307
Tssr98308 10 78440779 to 78440804 25 - TSS region transcription start site region 98308
Mir6908 10 78445095 to 78445157 62 - miRNA gene microRNA 6908
D10Jhu33 10 78445689 to 78445813 124 DNA segment DNA segment, Chr 10, Johns Hopkins University 33
Cpgi1782 10 78464380 to 78465394 1014 CpG island CpG island 1782
Tssr98309 10 78464887 to 78464944 57 - TSS region transcription start site region 98309
Tssr98310 10 78464945 to 78464965 20 - TSS region transcription start site region 98310
Tssr98311 10 78464969 to 78464987 18 - TSS region transcription start site region 98311
Tssr94332 10 78465164 to 78465190 26 + TSS region transcription start site region 94332
Tssr94333 10 78465200 to 78465216 16 + TSS region transcription start site region 94333
Tssr94334 10 78465436 to 78465476 40 + TSS region transcription start site region 94334
D10Jhu38 10 78465567 to 78465853 286 DNA segment DNA segment, Chr 10, Johns Hopkins University 38
4933436P19Rik 10 78469815 to 78471256 1441 - unclassified gene RIKEN cDNA 4933436P19 gene
Cpgi1783 10 78481689 to 78482486 797 CpG island CpG island 1783
Gm9978 10 78484570 to 78487842 3272 - protein coding gene predicted gene 9978
Gm30232 10 78487088 to 78493520 6432 + lncRNA gene predicted gene, 30232
Cpgi1784 10 78487568 to 78487985 417 CpG island CpG island 1784
Gm47944 10 78501925 to 78520219 18294 - lincRNA gene predicted gene, 47944
D10Jhu34e 10 78504725 to 78504910 185 DNA segment DNA segment, Chr 10, Johns Hopkins University 34 expressed