Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:77921338-78262957

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trpm2 10 77907722 to 77969911 62189 - protein coding gene transient receptor potential cation channel, subfamily M, member 2
Tssr98254 10 77924126 to 77924135 9 - TSS region transcription start site region 98254
Tssr98255 10 77924181 to 77924204 23 - TSS region transcription start site region 98255
Tssr98256 10 77924285 to 77924305 20 - TSS region transcription start site region 98256
D10Jhu47 10 77938070 to 77938415 345 DNA segment DNA segment, Chr 10, Johns Hopkins University 47
Gm40705 10 77939058 to 77940259 1201 - lncRNA gene predicted gene, 40705
D10Jhu45 10 77962782 to 77962921 139 DNA segment DNA segment, Chr 10, Johns Hopkins University 45
D10Jhu46 10 77962928 to 77963066 138 DNA segment DNA segment, Chr 10, Johns Hopkins University 46
Cpgi1766 10 77969654 to 77970136 482 CpG island CpG island 1766
Tssr98257 10 77969808 to 77969839 31 - TSS region transcription start site region 98257
Tssr98258 10 77970521 to 77970531 10 - TSS region transcription start site region 98258
Tssr98259 10 77970554 to 77970586 32 - TSS region transcription start site region 98259
Cpgi1767 10 77978033 to 77978964 931 CpG island CpG island 1767
Cfap410 10 77978530 to 77985438 6908 + protein coding gene cilia and flagella associated protein 410
Tssr94303 10 77978620 to 77978671 51 + TSS region transcription start site region 94303
Tssr94304 10 77978690 to 77978701 11 + TSS region transcription start site region 94304
Tssr94305 10 77980668 to 77980669 1 + TSS region transcription start site region 94305
Pfkl 10 77986947 to 78009796 22849 - protein coding gene phosphofructokinase, liver, B-type
Tssr98260 10 77990221 to 77990238 17 - TSS region transcription start site region 98260
Cpgi1768 10 78008997 to 78010013 1016 CpG island CpG island 1768
Tssr98261 10 78009737 to 78009757 20 - TSS region transcription start site region 98261
D10Jor2 10 78018554 to 78019045 491 DNA segment DNA segment, Chr 10, Barbara Jordan 2
Cpgi1769 10 78018807 to 78019135 328 CpG island CpG island 1769
Tssr94306 10 78019022 to 78019035 13 + TSS region transcription start site region 94306
Aire 10 78030022 to 78043610 13588 - protein coding gene autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)
Cpgi1770 10 78034378 to 78034809 431 CpG island CpG island 1770
Tssr98262 10 78036121 to 78036124 3 - TSS region transcription start site region 98262
Tssr98263 10 78038255 to 78038263 8 - TSS region transcription start site region 98263
Tssr98264 10 78038267 to 78038299 32 - TSS region transcription start site region 98264
Tssr98265 10 78038306 to 78038315 9 - TSS region transcription start site region 98265
Dnmt3l 10 78042287 to 78063622 21335 + protein coding gene DNA (cytosine-5-)-methyltransferase 3-like
Cpgi1771 10 78043309 to 78043803 494 CpG island CpG island 1771
Tssr98266 10 78043607 to 78043611 4 - TSS region transcription start site region 98266
Tssr98267 10 78043660 to 78043696 36 - TSS region transcription start site region 98267
D10Jhu43 10 78045148 to 78045345 197 DNA segment DNA segment, Chr 10, Johns Hopkins University 43
Tssr94307 10 78049836 to 78049847 11 + TSS region transcription start site region 94307
Tssr94308 10 78049860 to 78049867 7 + TSS region transcription start site region 94308
Tssr94309 10 78049879 to 78049896 17 + TSS region transcription start site region 94309
Tssr94310 10 78049934 to 78049962 28 + TSS region transcription start site region 94310
Tssr94311 10 78050639 to 78050658 19 + TSS region transcription start site region 94311
Tssr94312 10 78052064 to 78052070 6 + TSS region transcription start site region 94312
Tssr94313 10 78054825 to 78054836 11 + TSS region transcription start site region 94313
Tssr94314 10 78054854 to 78054876 22 + TSS region transcription start site region 94314
Tssr94315 10 78054880 to 78054912 32 + TSS region transcription start site region 94315
Tssr94316 10 78055327 to 78055365 38 + TSS region transcription start site region 94316
Tssr94317 10 78057277 to 78057288 11 + TSS region transcription start site region 94317
Tssr94318 10 78057298 to 78057303 5 + TSS region transcription start site region 94318
D6Ertd14 10 78063362 to 78063608 246 DNA segment DNA segment, Chr 6, ERATO Doi 14
Cpgi1772 10 78069095 to 78070127 1032 CpG island CpG island 1772
Tssr94319 10 78069320 to 78069346 26 + TSS region transcription start site region 94319
Tssr94320 10 78069351 to 78069371 20 + TSS region transcription start site region 94320
Icosl 10 78069368 to 78079525 10157 + protein coding gene icos ligand
Tssr94321 10 78078874 to 78078899 25 + TSS region transcription start site region 94321
Gm30039 10 78091338 to 78092957 1619 - lncRNA gene predicted gene, 30039
Tssr98268 10 78092750 to 78092758 8 - TSS region transcription start site region 98268
D10Jhu42 10 78111537 to 78111774 237 DNA segment DNA segment, Chr 10, Johns Hopkins University 42
Gm47922 10 78121433 to 78138097 16664 - lincRNA gene predicted gene, 47922
D10Jhu41 10 78161758 to 78162148 390 DNA segment DNA segment, Chr 10, Johns Hopkins University 41
Gatd3a 10 78162067 to 78169768 7701 - protein coding gene glutamine amidotransferase like class 1 domain containing 3A
D10Jhu40 10 78162495 to 78162754 259 DNA segment DNA segment, Chr 10, Johns Hopkins University 40
Cpgi1773 10 78164823 to 78165035 212 CpG island CpG island 1773
Cpgi1774 10 78169289 to 78170243 954 CpG island CpG island 1774
Tssr98269 10 78169726 to 78169792 66 - TSS region transcription start site region 98269
Pwp2 10 78170909 to 78185149 14240 - protein coding gene PWP2 periodic tryptophan protein homolog (yeast)
Cpgi1775 10 78184863 to 78185440 577 CpG island CpG island 1775
Tssr98270 10 78185102 to 78185155 53 - TSS region transcription start site region 98270
Trappc10 10 78186725 to 78244641 57916 - protein coding gene trafficking protein particle complex 10
D10Mit139 10 78232660 to 78232805 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 139
D10Mit139.1 10 78232774 to 78232886 112 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 139.1
Tssr98271 10 78234736 to 78234740 4 - TSS region transcription start site region 98271
D10Mit260 10 78235707 to 78235954 247 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 260
Cpgi1776 10 78243883 to 78245339 1456 CpG island CpG island 1776
Tssr98272 10 78244602 to 78244676 74 - TSS region transcription start site region 98272
Gm40708 10 78246624 to 78255434 8810 + lncRNA gene predicted gene, 40708
Gm30122 10 78248880 to 78264096 15216 - lincRNA gene predicted gene, 30122