Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:77757722-78119911

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tspear 10 77686569 to 77887021 200452 + protein coding gene thrombospondin type laminin G domain and EAR repeats
Gm3233 10 77758990 to 77759682 692 - protein coding gene predicted gene 3233
Tssr98245 10 77767350 to 77767358 8 - TSS region transcription start site region 98245
Gm3238 10 77770633 to 77771325 692 - protein coding gene predicted gene 3238
Gm7138 10 77776252 to 77776944 692 - protein coding gene predicted gene 7138
Tssr98246 10 77777009 to 77777016 7 - TSS region transcription start site region 98246
Gm3250 10 77781850 to 77782542 692 - protein coding gene predicted gene 3250
Gm7137 10 77787490 to 77788200 710 - protein coding gene predicted gene 7137
Tssr3263 10 77788268 to 77788274 6 - TSS region transcription start site region 3263
Gm9639 10 77794399 to 77795076 677 - protein coding gene predicted gene 9639
Tssr98247 10 77795123 to 77795128 5 - TSS region transcription start site region 98247
D10Jhu50 10 77796449 to 77796779 330 DNA segment DNA segment, Chr 10, Johns Hopkins University 50
Gm19668 10 77798387 to 77799133 746 - protein coding gene predicted gene, 19668
Tssr98248 10 77799185 to 77799191 6 - TSS region transcription start site region 98248
Gm9507 10 77810967 to 77811843 876 - protein coding gene predicted gene 9507
Tssr98249 10 77811884 to 77811890 6 - TSS region transcription start site region 98249
Tssr94286 10 77814620 to 77814624 4 + TSS region transcription start site region 94286
Gm49918 10 77814682 to 77836652 21970 + protein coding gene predicted gene, 49918
Gm2696 10 77814682 to 77815404 722 + protein coding gene predicted gene 2696
D10Jhu49 10 77815740 to 77816003 263 DNA segment DNA segment, Chr 10, Johns Hopkins University 49
Krtap10-4 10 77826169 to 77827070 901 - protein coding gene keratin associated protein 10-4
Tssr98250 10 77827092 to 77827097 5 - TSS region transcription start site region 98250
Tssr94287 10 77835938 to 77835956 18 + TSS region transcription start site region 94287
Krtap10-10 10 77835947 to 77837251 1304 + protein coding gene keratin associated protein 10-10
Tssr94288 10 77836291 to 77836306 15 + TSS region transcription start site region 94288
Tssr94289 10 77837481 to 77837483 2 + TSS region transcription start site region 94289
Tssr94290 10 77837566 to 77837571 5 + TSS region transcription start site region 94290
Tssr94291 10 77837584 to 77837593 9 + TSS region transcription start site region 94291
Tssr94292 10 77837617 to 77837624 7 + TSS region transcription start site region 94292
Tssr94293 10 77837665 to 77837674 9 + TSS region transcription start site region 94293
Tssr94294 10 77837828 to 77837833 5 + TSS region transcription start site region 94294
Tssr94295 10 77838354 to 77838366 12 + TSS region transcription start site region 94295
Gm36176 10 77846803 to 77847303 500 + protein coding gene predicted gene, 36176
Tssr94296 10 77852810 to 77852816 6 + TSS region transcription start site region 94296
Gm10318 10 77852859 to 77853788 929 + protein coding gene predicted gene 10318
Tssr94297 10 77861951 to 77861956 5 + TSS region transcription start site region 94297
Gm3285 10 77861975 to 77862638 663 + protein coding gene predicted gene 3285
Tssr94298 10 77862262 to 77862280 18 + TSS region transcription start site region 94298
Tssr94299 10 77864607 to 77864643 36 + TSS region transcription start site region 94299
Cpgi1764 10 77864669 to 77864915 246 CpG island CpG island 1764
Tssr3264 10 77874574 to 77874577 3 + TSS region transcription start site region 3264
D10Jhu48 10 77878566 to 77878846 280 DNA segment DNA segment, Chr 10, Johns Hopkins University 48
Tssr3265 10 77880083 to 77880086 3 + TSS region transcription start site region 3265
Tssr94300 10 77893056 to 77893089 33 + TSS region transcription start site region 94300
Tssr94301 10 77893413 to 77893431 18 + TSS region transcription start site region 94301
1700009J07Rik 10 77893420 to 77896111 2691 + lincRNA gene RIKEN cDNA 1700009J07 gene
Tssr94302 10 77893435 to 77893442 7 + TSS region transcription start site region 94302
Lrrc3 10 77897575 to 77902536 4961 - protein coding gene leucine rich repeat containing 3
Tssr98251 10 77897913 to 77897931 18 - TSS region transcription start site region 98251
Cpgi1765 10 77901917 to 77903423 1506 CpG island CpG island 1765
Tssr98252 10 77902428 to 77902461 33 - TSS region transcription start site region 98252
Tssr98253 10 77902467 to 77902529 62 - TSS region transcription start site region 98253
Trpm2 10 77907722 to 77969911 62189 - protein coding gene transient receptor potential cation channel, subfamily M, member 2
Gm22394 10 77912636 to 77912711 75 - snoRNA gene predicted gene, 22394
Gm22871 10 77913798 to 77913851 53 - snoRNA gene predicted gene, 22871
Tssr98254 10 77924126 to 77924135 9 - TSS region transcription start site region 98254
Tssr98255 10 77924181 to 77924204 23 - TSS region transcription start site region 98255
Tssr98256 10 77924285 to 77924305 20 - TSS region transcription start site region 98256
D10Jhu47 10 77938070 to 77938415 345 DNA segment DNA segment, Chr 10, Johns Hopkins University 47
Gm40705 10 77939058 to 77940259 1201 - lncRNA gene predicted gene, 40705
D10Jhu45 10 77962782 to 77962921 139 DNA segment DNA segment, Chr 10, Johns Hopkins University 45
D10Jhu46 10 77962928 to 77963066 138 DNA segment DNA segment, Chr 10, Johns Hopkins University 46
Cpgi1766 10 77969654 to 77970136 482 CpG island CpG island 1766
Tssr98257 10 77969808 to 77969839 31 - TSS region transcription start site region 98257
Tssr98258 10 77970521 to 77970531 10 - TSS region transcription start site region 98258
Tssr98259 10 77970554 to 77970586 32 - TSS region transcription start site region 98259
Cpgi1767 10 77978033 to 77978964 931 CpG island CpG island 1767
Cfap410 10 77978530 to 77985438 6908 + protein coding gene cilia and flagella associated protein 410
Tssr94303 10 77978620 to 77978671 51 + TSS region transcription start site region 94303
Tssr94304 10 77978690 to 77978701 11 + TSS region transcription start site region 94304
Tssr94305 10 77980668 to 77980669 1 + TSS region transcription start site region 94305
Pfkl 10 77986947 to 78009796 22849 - protein coding gene phosphofructokinase, liver, B-type
Tssr98260 10 77990221 to 77990238 17 - TSS region transcription start site region 98260
Cpgi1768 10 78008997 to 78010013 1016 CpG island CpG island 1768
Tssr98261 10 78009737 to 78009757 20 - TSS region transcription start site region 98261
D10Jor2 10 78018554 to 78019045 491 DNA segment DNA segment, Chr 10, Barbara Jordan 2
Cpgi1769 10 78018807 to 78019135 328 CpG island CpG island 1769
Tssr94306 10 78019022 to 78019035 13 + TSS region transcription start site region 94306
Aire 10 78030022 to 78043610 13588 - protein coding gene autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)
Cpgi1770 10 78034378 to 78034809 431 CpG island CpG island 1770
Tssr98262 10 78036121 to 78036124 3 - TSS region transcription start site region 98262
Tssr98263 10 78038255 to 78038263 8 - TSS region transcription start site region 98263
Tssr98264 10 78038267 to 78038299 32 - TSS region transcription start site region 98264
Tssr98265 10 78038306 to 78038315 9 - TSS region transcription start site region 98265
Dnmt3l 10 78042287 to 78063622 21335 + protein coding gene DNA (cytosine-5-)-methyltransferase 3-like
Cpgi1771 10 78043309 to 78043803 494 CpG island CpG island 1771
Tssr98266 10 78043607 to 78043611 4 - TSS region transcription start site region 98266
Tssr98267 10 78043660 to 78043696 36 - TSS region transcription start site region 98267
D10Jhu43 10 78045148 to 78045345 197 DNA segment DNA segment, Chr 10, Johns Hopkins University 43
Tssr94307 10 78049836 to 78049847 11 + TSS region transcription start site region 94307
Tssr94308 10 78049860 to 78049867 7 + TSS region transcription start site region 94308
Tssr94309 10 78049879 to 78049896 17 + TSS region transcription start site region 94309
Tssr94310 10 78049934 to 78049962 28 + TSS region transcription start site region 94310
Tssr94311 10 78050639 to 78050658 19 + TSS region transcription start site region 94311
Tssr94312 10 78052064 to 78052070 6 + TSS region transcription start site region 94312
Tssr94313 10 78054825 to 78054836 11 + TSS region transcription start site region 94313
Tssr94314 10 78054854 to 78054876 22 + TSS region transcription start site region 94314
Tssr94315 10 78054880 to 78054912 32 + TSS region transcription start site region 94315
Tssr94316 10 78055327 to 78055365 38 + TSS region transcription start site region 94316
Tssr94317 10 78057277 to 78057288 11 + TSS region transcription start site region 94317
Tssr94318 10 78057298 to 78057303 5 + TSS region transcription start site region 94318
D6Ertd14 10 78063362 to 78063608 246 DNA segment DNA segment, Chr 6, ERATO Doi 14
Cpgi1772 10 78069095 to 78070127 1032 CpG island CpG island 1772
Tssr94319 10 78069320 to 78069346 26 + TSS region transcription start site region 94319
Tssr94320 10 78069351 to 78069371 20 + TSS region transcription start site region 94320
Icosl 10 78069368 to 78079525 10157 + protein coding gene icos ligand
Tssr94321 10 78078874 to 78078899 25 + TSS region transcription start site region 94321
Gm30039 10 78091338 to 78092957 1619 - lncRNA gene predicted gene, 30039
Tssr98268 10 78092750 to 78092758 8 - TSS region transcription start site region 98268
D10Jhu42 10 78111537 to 78111774 237 DNA segment DNA segment, Chr 10, Johns Hopkins University 42