Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:7771528-8733632

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ginm1 10 7767947 to 7780948 13001 - protein coding gene glycoprotein integral membrane 1
B430219N15Rik 10 7780185 to 7781357 1172 + antisense lncRNA gene RIKEN cDNA B430219N15 gene
Cpgi1277 10 7780238 to 7781069 831 CpG island CpG island 1277
Tssr92317 10 7780265 to 7780277 12 + TSS region transcription start site region 92317
Tssr96604 10 7780866 to 7780923 57 - TSS region transcription start site region 96604
6530403G13Rik 10 7791404 to 7792831 1427 - lncRNA gene RIKEN cDNA 6530403G13 gene
Cpgi1278 10 7792519 to 7793449 930 CpG island CpG island 1278
Tssr96605 10 7792795 to 7792833 38 - TSS region transcription start site region 96605
Ppil4 10 7792883 to 7822565 29682 + protein coding gene peptidylprolyl isomerase (cyclophilin)-like 4
Tssr92318 10 7792897 to 7792936 39 + TSS region transcription start site region 92318
Tssr92319 10 7802974 to 7802978 4 + TSS region transcription start site region 92319
Gm15560 10 7808116 to 7808758 642 - pseudogene predicted gene 15560
Tssr92320 10 7810356 to 7810368 12 + TSS region transcription start site region 92320
Tssr96606 10 7824579 to 7824599 20 - TSS region transcription start site region 96606
Tssr92321 10 7824963 to 7824979 16 + TSS region transcription start site region 92321
Tssr92322 10 7832315 to 7832325 10 + TSS region transcription start site region 92322
Tssr92323 10 7832326 to 7832367 41 + TSS region transcription start site region 92323
Tssr92324 10 7832414 to 7832454 40 + TSS region transcription start site region 92324
Tssr92325 10 7832457 to 7832491 34 + TSS region transcription start site region 92325
Zc3h12d 10 7832470 to 7870396 37926 + protein coding gene zinc finger CCCH type containing 12D
Tssr92326 10 7832507 to 7832520 13 + TSS region transcription start site region 92326
Tssr96607 10 7833276 to 7833289 13 - TSS region transcription start site region 96607
Mir5104 10 7836381 to 7836474 93 + miRNA gene microRNA 5104
Tssr92327 10 7836468 to 7836487 19 + TSS region transcription start site region 92327
Tssr92328 10 7839687 to 7839712 25 + TSS region transcription start site region 92328
Gm24726 10 7848361 to 7848481 120 - snoRNA gene predicted gene, 24726
Tssr92329 10 7858593 to 7858602 9 + TSS region transcription start site region 92329
Tssr92330 10 7862090 to 7862103 13 + TSS region transcription start site region 92330
Cpgi1279 10 7862287 to 7862652 365 CpG island CpG island 1279
Cpgi1280 10 7867119 to 7868168 1049 CpG island CpG island 1280
Tssr92331 10 7868873 to 7868878 5 + TSS region transcription start site region 92331
Tab2 10 7905653 to 7956230 50577 - protein coding gene TGF-beta activated kinase 1/MAP3K7 binding protein 2
Tssr96608 10 7906314 to 7906348 34 - TSS region transcription start site region 96608
Tssr96609 10 7906970 to 7906989 19 - TSS region transcription start site region 96609
Tssr96610 10 7919800 to 7919816 16 - TSS region transcription start site region 96610
Tssr96611 10 7919872 to 7919891 19 - TSS region transcription start site region 96611
Tssr96612 10 7919934 to 7919961 27 - TSS region transcription start site region 96612
Tssr96613 10 7919987 to 7920017 30 - TSS region transcription start site region 96613
Tssr96614 10 7920024 to 7920073 49 - TSS region transcription start site region 96614
Tssr96615 10 7920080 to 7920094 14 - TSS region transcription start site region 96615
Tssr96616 10 7920144 to 7920158 14 - TSS region transcription start site region 96616
D10Mit181 10 7922001 to 7922149 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 181
Tssr96617 10 7936058 to 7936062 4 - TSS region transcription start site region 96617
Tssr96618 10 7946820 to 7946833 13 - TSS region transcription start site region 96618
6430537I21Rik 10 7949947 to 7954572 4625 unclassified gene RIKEN cDNA 6430537I21 gene
Tssr96619 10 7950160 to 7950167 7 - TSS region transcription start site region 96619
Cpgi1281 10 7955187 to 7957001 1814 CpG island CpG island 1281
Tssr96620 10 7955898 to 7955942 44 - TSS region transcription start site region 96620
Tssr96621 10 7956063 to 7956147 84 - TSS region transcription start site region 96621
Tssr96622 10 7956223 to 7956271 48 - TSS region transcription start site region 96622
Tssr96623 10 7956274 to 7956290 16 - TSS region transcription start site region 96623
Tssr96624 10 7956452 to 7956488 36 - TSS region transcription start site region 96624
Gm30820 10 7979880 to 7988871 8991 + lncRNA gene predicted gene, 30820
Gm48614 10 8001943 to 8021292 19349 - lincRNA gene predicted gene, 48614
Cpgi1282 10 8135673 to 8135914 241 CpG island CpG island 1282
Gm30906 10 8176131 to 8193340 17209 + lincRNA gene predicted gene, 30906
Gm30959 10 8192735 to 8196684 3949 - lncRNA gene predicted gene, 30959
Ust 10 8204756 to 8518825 314069 - protein coding gene uronyl-2-sulfotransferase
Cpgi1283 10 8207397 to 8207582 185 CpG island CpG island 1283
4930573G07Rik 10 8212274 to 8233991 21717 + lncRNA gene RIKEN cDNA 4930573G07 gene
Cpgi1284 10 8214028 to 8214278 250 CpG island CpG island 1284
Tssr92332 10 8214263 to 8214274 11 + TSS region transcription start site region 92332
Gm31052 10 8246528 to 8258632 12104 + lncRNA gene predicted gene, 31052
Tssr96625 10 8290224 to 8290229 5 - TSS region transcription start site region 96625
Tssr96626 10 8358325 to 8358356 31 - TSS region transcription start site region 96626
D10Mit305 10 8359714 to 8359928 214 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-305
Tssr96627 10 8451822 to 8451826 4 - TSS region transcription start site region 96627
Tssr96628 10 8453019 to 8453048 29 - TSS region transcription start site region 96628
Tssr96629 10 8471816 to 8471822 6 - TSS region transcription start site region 96629
D10Mit76 10 8503628 to 8503826 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 76
Tssr96630 10 8511621 to 8511627 6 - TSS region transcription start site region 96630
Cpgi1285 10 8517541 to 8519201 1660 CpG island CpG island 1285
Tssr96631 10 8518475 to 8518491 16 - TSS region transcription start site region 96631
Tssr96632 10 8518782 to 8518800 18 - TSS region transcription start site region 96632
Tssr96633 10 8518801 to 8518851 50 - TSS region transcription start site region 96633
Gm40600 10 8545041 to 8547144 2103 - protein coding gene predicted gene, 40600
Gm24374 10 8642934 to 8643039 105 + snRNA gene predicted gene, 24374
Gm48654 10 8713241 to 8717073 3832 + lincRNA gene predicted gene, 48654
Tssr96634 10 8721916 to 8721922 6 - TSS region transcription start site region 96634
Sash1 10 8722219 to 8886070 163851 - protein coding gene SAM and SH3 domain containing 1
Tssr96635 10 8723528 to 8723542 14 - TSS region transcription start site region 96635
Tssr96636 10 8725094 to 8725119 25 - TSS region transcription start site region 96636
Obsty3 10 116355075 to 8359714 -107995361 QTL obesity 3