Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:77713256-78883266

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288 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(10Prmt2-Pdxk)4Yey 10 76207226 to 78464948 2257722 chromosomal deletion deletion, Chr 10, Y Eugene Yu 4
Del(10Prmt2-Cstb)4Yah 10 76207226 to 78427622 2220396 complex/cluster/region deletion, Chr10, Yann Herault 4
Dp(10Prmt2-Pdxk)2Yey 10 76207226 to 78464948 2257722 chromosomal duplication duplication, Chr 10, Y Eugene Yu 2
Tspear 10 77686569 to 77887021 200452 + protein coding gene thrombospondin type laminin G domain and EAR repeats
Tssr94283 10 77715768 to 77715773 5 + TSS region transcription start site region 94283
Gm10142 10 77715807 to 77716169 362 + protein coding gene predicted gene 10142
Gm48179 10 77717896 to 77718418 522 - pseudogene predicted gene, 48179
Tssr94284 10 77720584 to 77720593 9 + TSS region transcription start site region 94284
Krtap12-1 10 77720599 to 77721254 655 + protein coding gene keratin associated protein 12-1
Tssr94285 10 77726449 to 77726452 3 + TSS region transcription start site region 94285
Gm10100 10 77726486 to 77726848 362 + protein coding gene predicted gene 10100
Gm48180 10 77734841 to 77735155 314 - pseudogene predicted gene, 48180
Tssr98242 10 77735192 to 77735195 3 - TSS region transcription start site region 98242
D10Jhu25 10 77740505 to 77740608 103 DNA segment DNA segment, Chr 10, Johns Hopkins University 25
Gm18596 10 77741979 to 77742500 521 - pseudogene predicted gene, 18596
Tssr98243 10 77742678 to 77742683 5 - TSS region transcription start site region 98243
Gm48178 10 77749494 to 77749580 86 - pseudogene predicted gene, 48178
Gm9736 10 77750521 to 77751354 833 - protein coding gene predicted gene 9736
Tssr98244 10 77751420 to 77751425 5 - TSS region transcription start site region 98244
Gm3233 10 77758990 to 77759682 692 - protein coding gene predicted gene 3233
Tssr98245 10 77767350 to 77767358 8 - TSS region transcription start site region 98245
Gm3238 10 77770633 to 77771325 692 - protein coding gene predicted gene 3238
Gm7138 10 77776252 to 77776944 692 - protein coding gene predicted gene 7138
Tssr98246 10 77777009 to 77777016 7 - TSS region transcription start site region 98246
Gm3250 10 77781850 to 77782542 692 - protein coding gene predicted gene 3250
Gm7137 10 77787490 to 77788200 710 - protein coding gene predicted gene 7137
Tssr3263 10 77788268 to 77788274 6 - TSS region transcription start site region 3263
Gm9639 10 77794399 to 77795076 677 - protein coding gene predicted gene 9639
Tssr98247 10 77795123 to 77795128 5 - TSS region transcription start site region 98247
D10Jhu50 10 77796449 to 77796779 330 DNA segment DNA segment, Chr 10, Johns Hopkins University 50
Gm19668 10 77798387 to 77799133 746 - protein coding gene predicted gene, 19668
Tssr98248 10 77799185 to 77799191 6 - TSS region transcription start site region 98248
Gm9507 10 77810967 to 77811843 876 - protein coding gene predicted gene 9507
Tssr98249 10 77811884 to 77811890 6 - TSS region transcription start site region 98249
Tssr94286 10 77814620 to 77814624 4 + TSS region transcription start site region 94286
Gm49918 10 77814682 to 77836652 21970 + protein coding gene predicted gene, 49918
Gm2696 10 77814682 to 77815404 722 + protein coding gene predicted gene 2696
D10Jhu49 10 77815740 to 77816003 263 DNA segment DNA segment, Chr 10, Johns Hopkins University 49
Krtap10-4 10 77826169 to 77827070 901 - protein coding gene keratin associated protein 10-4
Tssr98250 10 77827092 to 77827097 5 - TSS region transcription start site region 98250
Tssr94287 10 77835938 to 77835956 18 + TSS region transcription start site region 94287
Krtap10-10 10 77835947 to 77837251 1304 + protein coding gene keratin associated protein 10-10
Tssr94288 10 77836291 to 77836306 15 + TSS region transcription start site region 94288
Tssr94289 10 77837481 to 77837483 2 + TSS region transcription start site region 94289
Tssr94290 10 77837566 to 77837571 5 + TSS region transcription start site region 94290
Tssr94291 10 77837584 to 77837593 9 + TSS region transcription start site region 94291
Tssr94292 10 77837617 to 77837624 7 + TSS region transcription start site region 94292
Tssr94293 10 77837665 to 77837674 9 + TSS region transcription start site region 94293
Tssr94294 10 77837828 to 77837833 5 + TSS region transcription start site region 94294
Tssr94295 10 77838354 to 77838366 12 + TSS region transcription start site region 94295
Gm36176 10 77846803 to 77847303 500 + protein coding gene predicted gene, 36176
Tssr94296 10 77852810 to 77852816 6 + TSS region transcription start site region 94296
Gm10318 10 77852859 to 77853788 929 + protein coding gene predicted gene 10318
Tssr94297 10 77861951 to 77861956 5 + TSS region transcription start site region 94297
Gm3285 10 77861975 to 77862638 663 + protein coding gene predicted gene 3285
Tssr94298 10 77862262 to 77862280 18 + TSS region transcription start site region 94298
Tssr94299 10 77864607 to 77864643 36 + TSS region transcription start site region 94299
Cpgi1764 10 77864669 to 77864915 246 CpG island CpG island 1764
Tssr3264 10 77874574 to 77874577 3 + TSS region transcription start site region 3264
D10Jhu48 10 77878566 to 77878846 280 DNA segment DNA segment, Chr 10, Johns Hopkins University 48
Tssr3265 10 77880083 to 77880086 3 + TSS region transcription start site region 3265
Tssr94300 10 77893056 to 77893089 33 + TSS region transcription start site region 94300
Tssr94301 10 77893413 to 77893431 18 + TSS region transcription start site region 94301
1700009J07Rik 10 77893420 to 77896111 2691 + lincRNA gene RIKEN cDNA 1700009J07 gene
Tssr94302 10 77893435 to 77893442 7 + TSS region transcription start site region 94302
Lrrc3 10 77897575 to 77902536 4961 - protein coding gene leucine rich repeat containing 3
Tssr98251 10 77897913 to 77897931 18 - TSS region transcription start site region 98251
Cpgi1765 10 77901917 to 77903423 1506 CpG island CpG island 1765
Tssr98252 10 77902428 to 77902461 33 - TSS region transcription start site region 98252
Tssr98253 10 77902467 to 77902529 62 - TSS region transcription start site region 98253
Trpm2 10 77907722 to 77969911 62189 - protein coding gene transient receptor potential cation channel, subfamily M, member 2
Gm22394 10 77912636 to 77912711 75 - snoRNA gene predicted gene, 22394
Gm22871 10 77913798 to 77913851 53 - snoRNA gene predicted gene, 22871
Tssr98254 10 77924126 to 77924135 9 - TSS region transcription start site region 98254
Tssr98255 10 77924181 to 77924204 23 - TSS region transcription start site region 98255
Tssr98256 10 77924285 to 77924305 20 - TSS region transcription start site region 98256
D10Jhu47 10 77938070 to 77938415 345 DNA segment DNA segment, Chr 10, Johns Hopkins University 47
Gm40705 10 77939058 to 77940259 1201 - lncRNA gene predicted gene, 40705
D10Jhu45 10 77962782 to 77962921 139 DNA segment DNA segment, Chr 10, Johns Hopkins University 45
D10Jhu46 10 77962928 to 77963066 138 DNA segment DNA segment, Chr 10, Johns Hopkins University 46
Cpgi1766 10 77969654 to 77970136 482 CpG island CpG island 1766
Tssr98257 10 77969808 to 77969839 31 - TSS region transcription start site region 98257
Tssr98258 10 77970521 to 77970531 10 - TSS region transcription start site region 98258
Tssr98259 10 77970554 to 77970586 32 - TSS region transcription start site region 98259
Cpgi1767 10 77978033 to 77978964 931 CpG island CpG island 1767
Cfap410 10 77978530 to 77985438 6908 + protein coding gene cilia and flagella associated protein 410
Tssr94303 10 77978620 to 77978671 51 + TSS region transcription start site region 94303
Tssr94304 10 77978690 to 77978701 11 + TSS region transcription start site region 94304
Tssr94305 10 77980668 to 77980669 1 + TSS region transcription start site region 94305
Pfkl 10 77986947 to 78009796 22849 - protein coding gene phosphofructokinase, liver, B-type
Tssr98260 10 77990221 to 77990238 17 - TSS region transcription start site region 98260
Cpgi1768 10 78008997 to 78010013 1016 CpG island CpG island 1768
Tssr98261 10 78009737 to 78009757 20 - TSS region transcription start site region 98261
D10Jor2 10 78018554 to 78019045 491 DNA segment DNA segment, Chr 10, Barbara Jordan 2
Cpgi1769 10 78018807 to 78019135 328 CpG island CpG island 1769
Tssr94306 10 78019022 to 78019035 13 + TSS region transcription start site region 94306
Aire 10 78030022 to 78043610 13588 - protein coding gene autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)
Cpgi1770 10 78034378 to 78034809 431 CpG island CpG island 1770
Tssr98262 10 78036121 to 78036124 3 - TSS region transcription start site region 98262
Tssr98263 10 78038255 to 78038263 8 - TSS region transcription start site region 98263
Tssr98264 10 78038267 to 78038299 32 - TSS region transcription start site region 98264
Tssr98265 10 78038306 to 78038315 9 - TSS region transcription start site region 98265
Dnmt3l 10 78042287 to 78063622 21335 + protein coding gene DNA (cytosine-5-)-methyltransferase 3-like
Cpgi1771 10 78043309 to 78043803 494 CpG island CpG island 1771
Tssr98266 10 78043607 to 78043611 4 - TSS region transcription start site region 98266
Tssr98267 10 78043660 to 78043696 36 - TSS region transcription start site region 98267
D10Jhu43 10 78045148 to 78045345 197 DNA segment DNA segment, Chr 10, Johns Hopkins University 43
Tssr94307 10 78049836 to 78049847 11 + TSS region transcription start site region 94307
Tssr94308 10 78049860 to 78049867 7 + TSS region transcription start site region 94308
Tssr94309 10 78049879 to 78049896 17 + TSS region transcription start site region 94309
Tssr94310 10 78049934 to 78049962 28 + TSS region transcription start site region 94310
Tssr94311 10 78050639 to 78050658 19 + TSS region transcription start site region 94311
Tssr94312 10 78052064 to 78052070 6 + TSS region transcription start site region 94312
Tssr94313 10 78054825 to 78054836 11 + TSS region transcription start site region 94313
Tssr94314 10 78054854 to 78054876 22 + TSS region transcription start site region 94314
Tssr94315 10 78054880 to 78054912 32 + TSS region transcription start site region 94315
Tssr94316 10 78055327 to 78055365 38 + TSS region transcription start site region 94316
Tssr94317 10 78057277 to 78057288 11 + TSS region transcription start site region 94317
Tssr94318 10 78057298 to 78057303 5 + TSS region transcription start site region 94318
D6Ertd14 10 78063362 to 78063608 246 DNA segment DNA segment, Chr 6, ERATO Doi 14
Cpgi1772 10 78069095 to 78070127 1032 CpG island CpG island 1772
Tssr94319 10 78069320 to 78069346 26 + TSS region transcription start site region 94319
Tssr94320 10 78069351 to 78069371 20 + TSS region transcription start site region 94320
Icosl 10 78069368 to 78079525 10157 + protein coding gene icos ligand
Tssr94321 10 78078874 to 78078899 25 + TSS region transcription start site region 94321
Gm30039 10 78091338 to 78092957 1619 - lncRNA gene predicted gene, 30039
Tssr98268 10 78092750 to 78092758 8 - TSS region transcription start site region 98268
D10Jhu42 10 78111537 to 78111774 237 DNA segment DNA segment, Chr 10, Johns Hopkins University 42
Gm47922 10 78121433 to 78138097 16664 - lincRNA gene predicted gene, 47922
D10Jhu41 10 78161758 to 78162148 390 DNA segment DNA segment, Chr 10, Johns Hopkins University 41
Gatd3a 10 78162067 to 78169768 7701 - protein coding gene glutamine amidotransferase like class 1 domain containing 3A
D10Jhu40 10 78162495 to 78162754 259 DNA segment DNA segment, Chr 10, Johns Hopkins University 40
Cpgi1773 10 78164823 to 78165035 212 CpG island CpG island 1773
Cpgi1774 10 78169289 to 78170243 954 CpG island CpG island 1774
Tssr98269 10 78169726 to 78169792 66 - TSS region transcription start site region 98269
Pwp2 10 78170909 to 78185149 14240 - protein coding gene PWP2 periodic tryptophan protein homolog (yeast)
Cpgi1775 10 78184863 to 78185440 577 CpG island CpG island 1775
Tssr98270 10 78185102 to 78185155 53 - TSS region transcription start site region 98270
Trappc10 10 78186725 to 78244641 57916 - protein coding gene trafficking protein particle complex 10
D10Mit139 10 78232660 to 78232805 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 139
D10Mit139.1 10 78232774 to 78232886 112 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 139.1
Tssr98271 10 78234736 to 78234740 4 - TSS region transcription start site region 98271
D10Mit260 10 78235707 to 78235954 247 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 260
Cpgi1776 10 78243883 to 78245339 1456 CpG island CpG island 1776
Tssr98272 10 78244602 to 78244676 74 - TSS region transcription start site region 98272
Gm40708 10 78246624 to 78255434 8810 + lncRNA gene predicted gene, 40708
Gm30122 10 78248880 to 78264096 15216 - lincRNA gene predicted gene, 30122
Gm47976 10 78264531 to 78266075 1544 - unclassified gene predicted gene, 47976
Agpat3 10 78269174 to 78352484 83310 - protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 3
Tssr98273 10 78283122 to 78283139 17 - TSS region transcription start site region 98273
Tssr98274 10 78295383 to 78295388 5 - TSS region transcription start site region 98274
Tssr98275 10 78295397 to 78295418 21 - TSS region transcription start site region 98275
Tssr98276 10 78295419 to 78295422 3 - TSS region transcription start site region 98276
Tssr98277 10 78297852 to 78297863 11 - TSS region transcription start site region 98277
Tssr98278 10 78297891 to 78297902 11 - TSS region transcription start site region 98278
Tssr98279 10 78297915 to 78297986 71 - TSS region transcription start site region 98279
Tssr98280 10 78297993 to 78297998 5 - TSS region transcription start site region 98280
Tssr98281 10 78298135 to 78298146 11 - TSS region transcription start site region 98281
Tssr98282 10 78298162 to 78298184 22 - TSS region transcription start site region 98282
Tssr98283 10 78298192 to 78298203 11 - TSS region transcription start site region 98283
Tssr98284 10 78298256 to 78298266 10 - TSS region transcription start site region 98284
Tssr98285 10 78298292 to 78298327 35 - TSS region transcription start site region 98285
Tssr94322 10 78298310 to 78298317 7 + TSS region transcription start site region 94322
Gm47992 10 78298315 to 78300301 1986 + unclassified gene predicted gene, 47992
Tssr98286 10 78307369 to 78307393 24 - TSS region transcription start site region 98286
Tssr98287 10 78307603 to 78307619 16 - TSS region transcription start site region 98287
Tssr98288 10 78311984 to 78312005 21 - TSS region transcription start site region 98288
Tssr98289 10 78312015 to 78312030 15 - TSS region transcription start site region 98289
n-R5s77 10 78314165 to 78314283 118 + rRNA gene nuclear encoded rRNA 5S 77
Tssr98290 10 78320704 to 78320707 3 - TSS region transcription start site region 98290
D10Mit175 10 78327873 to 78327981 108 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 175
Mir7659 10 78340150 to 78340207 57 - miRNA gene microRNA 7659
Cpgi1777 10 78351639 to 78353073 1434 CpG island CpG island 1777
Tssr98291 10 78351690 to 78351708 18 - TSS region transcription start site region 98291
Tssr98292 10 78351711 to 78351722 11 - TSS region transcription start site region 98292
Tssr98293 10 78352064 to 78352067 3 - TSS region transcription start site region 98293
Tssr98294 10 78352077 to 78352095 18 - TSS region transcription start site region 98294
Tssr98295 10 78352097 to 78352114 17 - TSS region transcription start site region 98295
Tssr98296 10 78352289 to 78352317 28 - TSS region transcription start site region 98296
Tssr98297 10 78352323 to 78352459 136 - TSS region transcription start site region 98297
Tssr98298 10 78352469 to 78352515 46 - TSS region transcription start site region 98298
Tssr94323 10 78352522 to 78352536 14 + TSS region transcription start site region 94323
Gm40709 10 78352541 to 78355640 3099 + bidirectional promoter lncRNA gene predicted gene, 40709
Tssr94324 10 78352543 to 78352548 5 + TSS region transcription start site region 94324
Tssr94325 10 78352562 to 78352568 6 + TSS region transcription start site region 94325
Tssr98299 10 78353637 to 78353645 8 - TSS region transcription start site region 98299
Gm22514 10 78370013 to 78370320 307 - unclassified non-coding RNA gene predicted gene, 22514
Cpgi1778 10 78373094 to 78373304 210 CpG island CpG island 1778
n-TAagc5 10 78383645 to 78383717 72 - tRNA gene nuclear encoded tRNA alanine 5 (anticodon AGC)
Cpgi1779 10 78392035 to 78392318 283 CpG island CpG island 1779
Tssr94326 10 78393298 to 78393308 10 + TSS region transcription start site region 94326
Gm10146 10 78393320 to 78393628 308 + pseudogene predicted gene 10146
Rrp1 10 78400384 to 78413043 12659 - protein coding gene ribosomal RNA processing 1 homolog (S. cerevisiae)
Tssr94327 10 78400888 to 78400935 47 + TSS region transcription start site region 94327
Tssr98300 10 78403075 to 78403082 7 - TSS region transcription start site region 98300
Tssr94328 10 78404928 to 78404940 12 + TSS region transcription start site region 94328
Tssr98301 10 78405111 to 78405121 10 - TSS region transcription start site region 98301
Mir6907 10 78408475 to 78408545 70 - miRNA gene microRNA 6907
Cpgi1780 10 78412319 to 78413399 1080 CpG island CpG island 1780
Tssr98302 10 78412851 to 78412862 11 - TSS region transcription start site region 98302