Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:7747187-9957190

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Katna1 10 7726000 to 7763150 37150 + protein coding gene katanin p60 (ATPase-containing) subunit A1
Gm20470 10 7743520 to 7761099 17579 - unclassified non-coding RNA gene predicted gene 20470
Tssr92315 10 7753563 to 7753575 12 + TSS region transcription start site region 92315
Tssr92316 10 7758694 to 7758701 7 + TSS region transcription start site region 92316
Ginm1 10 7767947 to 7780948 13001 - protein coding gene glycoprotein integral membrane 1
Tssr96603 10 7768539 to 7768559 20 - TSS region transcription start site region 96603
B430219N15Rik 10 7780185 to 7781357 1172 + antisense lncRNA gene RIKEN cDNA B430219N15 gene
Cpgi1277 10 7780238 to 7781069 831 CpG island CpG island 1277
Tssr92317 10 7780265 to 7780277 12 + TSS region transcription start site region 92317
Tssr96604 10 7780866 to 7780923 57 - TSS region transcription start site region 96604
6530403G13Rik 10 7791404 to 7792831 1427 - lncRNA gene RIKEN cDNA 6530403G13 gene
Cpgi1278 10 7792519 to 7793449 930 CpG island CpG island 1278
Tssr96605 10 7792795 to 7792833 38 - TSS region transcription start site region 96605
Ppil4 10 7792883 to 7822565 29682 + protein coding gene peptidylprolyl isomerase (cyclophilin)-like 4
Tssr92318 10 7792897 to 7792936 39 + TSS region transcription start site region 92318
Tssr92319 10 7802974 to 7802978 4 + TSS region transcription start site region 92319
Gm15560 10 7808116 to 7808758 642 - pseudogene predicted gene 15560
Tssr92320 10 7810356 to 7810368 12 + TSS region transcription start site region 92320
Tssr96606 10 7824579 to 7824599 20 - TSS region transcription start site region 96606
Tssr92321 10 7824963 to 7824979 16 + TSS region transcription start site region 92321
Tssr92322 10 7832315 to 7832325 10 + TSS region transcription start site region 92322
Tssr92323 10 7832326 to 7832367 41 + TSS region transcription start site region 92323
Tssr92324 10 7832414 to 7832454 40 + TSS region transcription start site region 92324
Tssr92325 10 7832457 to 7832491 34 + TSS region transcription start site region 92325
Zc3h12d 10 7832470 to 7870396 37926 + protein coding gene zinc finger CCCH type containing 12D
Tssr92326 10 7832507 to 7832520 13 + TSS region transcription start site region 92326
Tssr96607 10 7833276 to 7833289 13 - TSS region transcription start site region 96607
Mir5104 10 7836381 to 7836474 93 + miRNA gene microRNA 5104
Tssr92327 10 7836468 to 7836487 19 + TSS region transcription start site region 92327
Tssr92328 10 7839687 to 7839712 25 + TSS region transcription start site region 92328
Gm24726 10 7848361 to 7848481 120 - snoRNA gene predicted gene, 24726
Tssr92329 10 7858593 to 7858602 9 + TSS region transcription start site region 92329
Tssr92330 10 7862090 to 7862103 13 + TSS region transcription start site region 92330
Cpgi1279 10 7862287 to 7862652 365 CpG island CpG island 1279
Cpgi1280 10 7867119 to 7868168 1049 CpG island CpG island 1280
Tssr92331 10 7868873 to 7868878 5 + TSS region transcription start site region 92331
Tab2 10 7905653 to 7956230 50577 - protein coding gene TGF-beta activated kinase 1/MAP3K7 binding protein 2
Tssr96608 10 7906314 to 7906348 34 - TSS region transcription start site region 96608
Tssr96609 10 7906970 to 7906989 19 - TSS region transcription start site region 96609
Tssr96610 10 7919800 to 7919816 16 - TSS region transcription start site region 96610
Tssr96611 10 7919872 to 7919891 19 - TSS region transcription start site region 96611
Tssr96612 10 7919934 to 7919961 27 - TSS region transcription start site region 96612
Tssr96613 10 7919987 to 7920017 30 - TSS region transcription start site region 96613
Tssr96614 10 7920024 to 7920073 49 - TSS region transcription start site region 96614
Tssr96615 10 7920080 to 7920094 14 - TSS region transcription start site region 96615
Tssr96616 10 7920144 to 7920158 14 - TSS region transcription start site region 96616
D10Mit181 10 7922001 to 7922149 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 181
Tssr96617 10 7936058 to 7936062 4 - TSS region transcription start site region 96617
Tssr96618 10 7946820 to 7946833 13 - TSS region transcription start site region 96618
6430537I21Rik 10 7949947 to 7954572 4625 unclassified gene RIKEN cDNA 6430537I21 gene
Tssr96619 10 7950160 to 7950167 7 - TSS region transcription start site region 96619
Cpgi1281 10 7955187 to 7957001 1814 CpG island CpG island 1281
Tssr96620 10 7955898 to 7955942 44 - TSS region transcription start site region 96620
Tssr96621 10 7956063 to 7956147 84 - TSS region transcription start site region 96621
Tssr96622 10 7956223 to 7956271 48 - TSS region transcription start site region 96622
Tssr96623 10 7956274 to 7956290 16 - TSS region transcription start site region 96623
Tssr96624 10 7956452 to 7956488 36 - TSS region transcription start site region 96624
Gm30820 10 7979880 to 7988871 8991 + lncRNA gene predicted gene, 30820
Gm48614 10 8001943 to 8021292 19349 - lincRNA gene predicted gene, 48614
Cpgi1282 10 8135673 to 8135914 241 CpG island CpG island 1282
Gm30906 10 8176131 to 8193340 17209 + lincRNA gene predicted gene, 30906
Gm30959 10 8192735 to 8196684 3949 - lncRNA gene predicted gene, 30959
Ust 10 8204756 to 8518825 314069 - protein coding gene uronyl-2-sulfotransferase
Cpgi1283 10 8207397 to 8207582 185 CpG island CpG island 1283
4930573G07Rik 10 8212274 to 8233991 21717 + lncRNA gene RIKEN cDNA 4930573G07 gene
Cpgi1284 10 8214028 to 8214278 250 CpG island CpG island 1284
Tssr92332 10 8214263 to 8214274 11 + TSS region transcription start site region 92332
Gm31052 10 8246528 to 8258632 12104 + lncRNA gene predicted gene, 31052
Tssr96625 10 8290224 to 8290229 5 - TSS region transcription start site region 96625
Tssr96626 10 8358325 to 8358356 31 - TSS region transcription start site region 96626
D10Mit305 10 8359714 to 8359928 214 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-305
Tssr96627 10 8451822 to 8451826 4 - TSS region transcription start site region 96627
Tssr96628 10 8453019 to 8453048 29 - TSS region transcription start site region 96628
Tssr96629 10 8471816 to 8471822 6 - TSS region transcription start site region 96629
D10Mit76 10 8503628 to 8503826 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 76
Tssr96630 10 8511621 to 8511627 6 - TSS region transcription start site region 96630
Cpgi1285 10 8517541 to 8519201 1660 CpG island CpG island 1285
Tssr96631 10 8518475 to 8518491 16 - TSS region transcription start site region 96631
Tssr96632 10 8518782 to 8518800 18 - TSS region transcription start site region 96632
Tssr96633 10 8518801 to 8518851 50 - TSS region transcription start site region 96633
Gm40600 10 8545041 to 8547144 2103 - protein coding gene predicted gene, 40600
Gm24374 10 8642934 to 8643039 105 + snRNA gene predicted gene, 24374
Gm48654 10 8713241 to 8717073 3832 + lincRNA gene predicted gene, 48654
Tssr96634 10 8721916 to 8721922 6 - TSS region transcription start site region 96634
Sash1 10 8722219 to 8886070 163851 - protein coding gene SAM and SH3 domain containing 1
Tssr96635 10 8723528 to 8723542 14 - TSS region transcription start site region 96635
Tssr96636 10 8725094 to 8725119 25 - TSS region transcription start site region 96636
Tssr96637 10 8749132 to 8749164 32 - TSS region transcription start site region 96637
Tssr92333 10 8751900 to 8751903 3 + TSS region transcription start site region 92333
Tssr96638 10 8756757 to 8756768 11 - TSS region transcription start site region 96638
Tssr96639 10 8760602 to 8760626 24 - TSS region transcription start site region 96639
Tssr96640 10 8762219 to 8762259 40 - TSS region transcription start site region 96640
Tssr96641 10 8762269 to 8762283 14 - TSS region transcription start site region 96641
Tssr96642 10 8762288 to 8762314 26 - TSS region transcription start site region 96642
Tssr96643 10 8762349 to 8762370 21 - TSS region transcription start site region 96643
Tssr3133 10 8762385 to 8762396 11 - TSS region transcription start site region 3133
Tssr96644 10 8762451 to 8762466 15 - TSS region transcription start site region 96644
Tssr96645 10 8762579 to 8762616 37 - TSS region transcription start site region 96645
D10Mit298 10 8787531 to 8787680 149 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 298
Tssr96646 10 8814003 to 8814010 7 - TSS region transcription start site region 96646
Tssr96647 10 8814398 to 8814419 21 - TSS region transcription start site region 96647
Tssr96648 10 8814425 to 8814461 36 - TSS region transcription start site region 96648
Tssr96649 10 8819819 to 8819830 11 - TSS region transcription start site region 96649
Gm25410 10 8824011 to 8824147 136 - snoRNA gene predicted gene, 25410
Tssr96650 10 8829802 to 8829828 26 - TSS region transcription start site region 96650
Tssr96651 10 8839771 to 8839782 11 - TSS region transcription start site region 96651
Tssr96652 10 8852187 to 8852190 3 - TSS region transcription start site region 96652
4930553I21Rik 10 8860864 to 8861443 579 - unclassified gene RIKEN cDNA 4930553I21 gene
Tssr96653 10 8861442 to 8861446 4 - TSS region transcription start site region 96653
Tssr92334 10 8866595 to 8866603 8 + TSS region transcription start site region 92334
Tssr92335 10 8874219 to 8874240 21 + TSS region transcription start site region 92335
Tssr92336 10 8884062 to 8884098 36 + TSS region transcription start site region 92336
Gm26674 10 8884637 to 8886878 2241 + antisense lncRNA gene predicted gene, 26674
Cpgi1286 10 8885629 to 8886766 1137 CpG island CpG island 1286
Tssr96654 10 8885661 to 8885698 37 - TSS region transcription start site region 96654
Tssr96655 10 8885868 to 8885885 17 - TSS region transcription start site region 96655
Tssr96656 10 8885895 to 8885947 52 - TSS region transcription start site region 96656
Tssr96657 10 8886015 to 8886030 15 - TSS region transcription start site region 96657
Tssr96658 10 8886033 to 8886076 43 - TSS region transcription start site region 96658
Tssr96659 10 8886092 to 8886101 9 - TSS region transcription start site region 96659
Tssr96660 10 8886116 to 8886125 9 - TSS region transcription start site region 96660
Tssr96661 10 8886201 to 8886216 15 - TSS region transcription start site region 96661
Tssr96662 10 8886231 to 8886245 14 - TSS region transcription start site region 96662
Tssr96663 10 8886525 to 8886543 18 - TSS region transcription start site region 96663
Tssr96664 10 8886589 to 8886612 23 - TSS region transcription start site region 96664
Tssr92337 10 8903965 to 8903975 10 + TSS region transcription start site region 92337
Gm48727 10 8903981 to 8945137 41156 + lincRNA gene predicted gene, 48727
Tssr96665 10 8945235 to 8945269 34 - TSS region transcription start site region 96665
Tssr96666 10 8945281 to 8945294 13 - TSS region transcription start site region 96666
Gm48728 10 8951949 to 8967244 15295 + lincRNA gene predicted gene, 48728
D10Jpk2 10 9003216 to 9003360 144 DNA segment DNA segment, Chr 10, Japan, Kominami 2
Tssr96667 10 9027225 to 9027255 30 - TSS region transcription start site region 96667
Tssr96668 10 9027295 to 9027335 40 - TSS region transcription start site region 96668
D10Mit279 10 9048469 to 9048745 276 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 279
Gm48743 10 9069419 to 9071475 2056 - unclassified gene predicted gene, 48743
Tssr96669 10 9071150 to 9071154 4 - TSS region transcription start site region 96669
Gm48744 10 9223971 to 9224751 780 - unclassified gene predicted gene, 48744
9030613N10Rik 10 9298011 to 9300615 2604 unclassified gene RIKEN cDNA 9030613N10 gene
Gm48748 10 9329851 to 9336618 6767 - lincRNA gene predicted gene, 48748
Tssr92338 10 9336656 to 9336682 26 + TSS region transcription start site region 92338
Gm48749 10 9336682 to 9395259 58577 + lincRNA gene predicted gene, 48749
Gm48750 10 9356155 to 9356532 377 + pseudogene predicted gene, 48750
D10Mit306 10 9387648 to 9387869 221 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-306
D10Mit77 10 9396646 to 9396791 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 77
D10Mit28 10 9413375 to 9413521 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 28
Sluc29 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 29
Sluc44f 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44f
Sluc44e 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44e
Sluc44d 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44d
Sluc44c 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44c
Sluc44b 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44b
Geot 10 9413375 to 9413521 146 QTL geotaxia
Sluc44 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44
Sluc44g 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44g
Sluc44a 10 9413375 to 9413521 146 QTL susceptibility to lung cancer 44a
Mts2 10 9413375 to 9413521 146 QTL mammary tumor susceptibility 2
Gm48751 10 9482929 to 9487202 4273 - unclassified gene predicted gene, 48751
Gm48753 10 9513937 to 9514106 169 + pseudogene predicted gene, 48753
Gm9930 10 9532531 to 9535681 3150 - protein coding gene predicted gene 9930
Gm48755 10 9546246 to 9547521 1275 - unclassified gene predicted gene, 48755
Gm48757 10 9566376 to 9567605 1229 + lincRNA gene predicted gene, 48757
Gm48758 10 9587602 to 9588114 512 - pseudogene predicted gene, 48758
Gm48759 10 9596472 to 9599423 2951 + lincRNA gene predicted gene, 48759
Samd5 10 9622936 to 9675208 52272 - protein coding gene sterile alpha motif domain containing 5
5830408B19Rik 10 9622943 to 9624848 1905 unclassified gene RIKEN cDNA 5830408B19 gene
Tssr96670 10 9649717 to 9649733 16 - TSS region transcription start site region 96670
Gm48760 10 9667676 to 9668176 500 + pseudogene predicted gene, 48760
Cpgi1287 10 9674367 to 9676148 1781 CpG island CpG island 1287
Tssr96671 10 9675163 to 9675243 80 - TSS region transcription start site region 96671
Tssr96672 10 9675399 to 9675416 17 - TSS region transcription start site region 96672
Tssr96673 10 9675799 to 9675819 20 - TSS region transcription start site region 96673
Tssr96674 10 9675825 to 9675847 22 - TSS region transcription start site region 96674
Cpgi1288 10 9683786 to 9684001 215 CpG island CpG island 1288
Gm6150 10 9684722 to 9691909 7187 + lncRNA gene predicted gene 6150
Gm31471 10 9694841 to 9699214 4373 - lncRNA gene predicted gene, 31471
Tssr92339 10 9732555 to 9732558 3 + TSS region transcription start site region 92339
Gm19161 10 9748447 to 9749180 733 - pseudogene predicted gene, 19161
Stxbp5 10 9755547 to 9901079 145532 - protein coding gene syntaxin binding protein 5 (tomosyn)
Tssr96675 10 9782828 to 9782831 3 - TSS region transcription start site region 96675
Cpgi1289 10 9797964 to 9798194 230 CpG island CpG island 1289
Tssr96676 10 9811992 to 9812034 42 - TSS region transcription start site region 96676
Tssr3134 10 9833635 to 9833637 2 + TSS region transcription start site region 3134
Gm25635 10 9852019 to 9852149 130 - snoRNA gene predicted gene, 25635
Tssr92340 10 9882208 to 9882210 2 + TSS region transcription start site region 92340
Tssr96677 10 9886707 to 9886725 18 - TSS region transcription start site region 96677
Tssr96678 10 9898323 to 9898328 5 - TSS region transcription start site region 96678
Cpgi1290 10 9900294 to 9901683 1389 CpG island CpG island 1290
Tssr96679 10 9901160 to 9901250 90 - TSS region transcription start site region 96679
Tssr92341 10 9901290 to 9901303 13 + TSS region transcription start site region 92341
Gm46210 10 9901313 to 9918843 17530 + lincRNA gene predicted gene, 46210
Mop2 10 29152428 to 9413375 -19739053 QTL morphine preference 2
Obsty3 10 116355075 to 8359714 -107995361 QTL obesity 3