Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:77117566-78557571

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378 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(10Prmt2-Cstb)4Yah 10 76207226 to 78427622 2220396 complex/cluster/region deletion, Chr10, Yann Herault 4
Dp(10Prmt2-Pdxk)2Yey 10 76207226 to 78464948 2257722 chromosomal duplication duplication, Chr 10, Y Eugene Yu 2
Del(10Prmt2-Pdxk)4Yey 10 76207226 to 78464948 2257722 chromosomal deletion deletion, Chr 10, Y Eugene Yu 4
Col18a1 10 77052178 to 77166530 114352 - protein coding gene collagen, type XVIII, alpha 1
Gm7775 10 77137100 to 77137952 852 + pseudogene predicted gene 7775
Tssr98226 10 77154331 to 77154335 4 - TSS region transcription start site region 98226
Cpgi1754 10 77165438 to 77166708 1270 CpG island CpG island 1754
Tssr98227 10 77166501 to 77166524 23 - TSS region transcription start site region 98227
Tssr98228 10 77166545 to 77166556 11 - TSS region transcription start site region 98228
Tssr94211 10 77166619 to 77166646 27 + TSS region transcription start site region 94211
Tssr98229 10 77182790 to 77182799 9 - TSS region transcription start site region 98229
Tssr94212 10 77191524 to 77191543 19 + TSS region transcription start site region 94212
Tssr94213 10 77196395 to 77196401 6 + TSS region transcription start site region 94213
Tssr94214 10 77197553 to 77197559 6 + TSS region transcription start site region 94214
Tssr98230 10 77199329 to 77199338 9 - TSS region transcription start site region 98230
Tssr98231 10 77201197 to 77201214 17 - TSS region transcription start site region 98231
Tssr94215 10 77202177 to 77202187 10 + TSS region transcription start site region 94215
Tssr94216 10 77202197 to 77202213 16 + TSS region transcription start site region 94216
D10Jhu60 10 77204849 to 77205123 274 DNA segment DNA segment, Chr 10, Johns Hopkins University 60
Gm35837 10 77206387 to 77243041 36654 + lncRNA gene predicted gene, 35837
Gm40704 10 77211020 to 77211935 915 + lncRNA gene predicted gene, 40704
Tssr98232 10 77211125 to 77211169 44 - TSS region transcription start site region 98232
Tssr3259 10 77215664 to 77215665 1 + TSS region transcription start site region 3259
D10Jhu59 10 77216484 to 77216911 427 DNA segment DNA segment, Chr 10, Johns Hopkins University 59
Tssr94217 10 77225709 to 77225717 8 + TSS region transcription start site region 94217
Tssr94218 10 77225719 to 77225729 10 + TSS region transcription start site region 94218
Tssr94219 10 77225922 to 77225971 49 + TSS region transcription start site region 94219
Gm40703 10 77250856 to 77252089 1233 - lncRNA gene predicted gene, 40703
Gm10941 10 77257776 to 77259223 1447 - bidirectional promoter lncRNA gene predicted gene 10941
Cpgi1755 10 77258724 to 77259949 1225 CpG island CpG island 1755
Pofut2 10 77259218 to 77269575 10357 + protein coding gene protein O-fucosyltransferase 2
Tssr94220 10 77259280 to 77259348 68 + TSS region transcription start site region 94220
Tssr94221 10 77259354 to 77259364 10 + TSS region transcription start site region 94221
Adarb1 10 77290726 to 77418270 127544 - protein coding gene adenosine deaminase, RNA-specific, B1
D10Bwg0424e 10 77316130 to 77316314 184 DNA segment DNA segment, Chr 10, Brigham & Women's Genetics 0424 expressed
Tssr98233 10 77370243 to 77370254 11 - TSS region transcription start site region 98233
D10Jhu58 10 77399133 to 77399319 186 DNA segment DNA segment, Chr 10, Johns Hopkins University 58
D10Jhu56 10 77407245 to 77407474 229 DNA segment DNA segment, Chr 10, Johns Hopkins University 56
Tssr94222 10 77416259 to 77416265 6 + TSS region transcription start site region 94222
Cpgi1756 10 77416779 to 77418789 2010 CpG island CpG island 1756
Tssr98234 10 77418207 to 77418228 21 - TSS region transcription start site region 98234
Tssr98235 10 77418230 to 77418276 46 - TSS region transcription start site region 98235
Gm17769 10 77418376 to 77420939 2563 + lncRNA gene predicted gene, 17769
Tssr94223 10 77449085 to 77449090 5 + TSS region transcription start site region 94223
Gm35920 10 77457973 to 77470556 12583 + lincRNA gene predicted gene, 35920
Tssr94224 10 77457999 to 77458038 39 + TSS region transcription start site region 94224
Gm35983 10 77470595 to 77472464 1869 + lncRNA gene predicted gene, 35983
Fam207a 10 77486661 to 77515785 29124 - protein coding gene family with sequence similarity 207, member A
2810425M01Rik 10 77486664 to 77516430 29766 + lincRNA gene RIKEN cDNA 2810425M01 gene
Cpgi1757 10 77515170 to 77516249 1079 CpG island CpG island 1757
Tssr98236 10 77515775 to 77515818 43 - TSS region transcription start site region 98236
Tssr3260 10 77515819 to 77515826 7 - TSS region transcription start site region 3260
Tssr94225 10 77515892 to 77515909 17 + TSS region transcription start site region 94225
Gm36040 10 77521389 to 77522542 1153 + lncRNA gene predicted gene, 36040
Cpgi1758 10 77522406 to 77522676 270 CpG island CpG island 1758
Tssr98237 10 77530157 to 77530204 47 - TSS region transcription start site region 98237
Itgb2 10 77530329 to 77565681 35352 + protein coding gene integrin beta 2
Tssr94226 10 77530342 to 77530412 70 + TSS region transcription start site region 94226
Tssr94227 10 77530421 to 77530432 11 + TSS region transcription start site region 94227
Tssr94228 10 77530559 to 77530571 12 + TSS region transcription start site region 94228
Tssr94229 10 77530607 to 77530617 10 + TSS region transcription start site region 94229
Tssr94230 10 77530628 to 77530642 14 + TSS region transcription start site region 94230
Tssr94231 10 77535953 to 77535958 5 + TSS region transcription start site region 94231
Tssr3261 10 77537066 to 77537101 35 + TSS region transcription start site region 3261
Tssr94232 10 77541939 to 77541966 27 + TSS region transcription start site region 94232
D10Mit92 10 77544096 to 77544280 184 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 92
Tssr94233 10 77545148 to 77545229 81 + TSS region transcription start site region 94233
Tssr94234 10 77546026 to 77546035 9 + TSS region transcription start site region 94234
Tssr94235 10 77546108 to 77546119 11 + TSS region transcription start site region 94235
Tssr94236 10 77546139 to 77546157 18 + TSS region transcription start site region 94236
Tssr94237 10 77547151 to 77547187 36 + TSS region transcription start site region 94237
Tssr94238 10 77547239 to 77547258 19 + TSS region transcription start site region 94238
Tssr94239 10 77547821 to 77547829 8 + TSS region transcription start site region 94239
Tssr94240 10 77548546 to 77548567 21 + TSS region transcription start site region 94240
Tssr94241 10 77548624 to 77548636 12 + TSS region transcription start site region 94241
Tssr94242 10 77549633 to 77549650 17 + TSS region transcription start site region 94242
Tssr94243 10 77550488 to 77550507 19 + TSS region transcription start site region 94243
Tssr94244 10 77550885 to 77550916 31 + TSS region transcription start site region 94244
Tssr94245 10 77553855 to 77553878 23 + TSS region transcription start site region 94245
Tssr94246 10 77554033 to 77554045 12 + TSS region transcription start site region 94246
Tssr94247 10 77555378 to 77555414 36 + TSS region transcription start site region 94247
Tssr94248 10 77556116 to 77556131 15 + TSS region transcription start site region 94248
Tssr94249 10 77559603 to 77559625 22 + TSS region transcription start site region 94249
Tssr94250 10 77560195 to 77560206 11 + TSS region transcription start site region 94250
Tssr94251 10 77560230 to 77560242 12 + TSS region transcription start site region 94251
Tssr94252 10 77560289 to 77560314 25 + TSS region transcription start site region 94252
Tssr94253 10 77561001 to 77561008 7 + TSS region transcription start site region 94253
Tssr94254 10 77561019 to 77561036 17 + TSS region transcription start site region 94254
Tssr94255 10 77561068 to 77561091 23 + TSS region transcription start site region 94255
Tssr94256 10 77561122 to 77561152 30 + TSS region transcription start site region 94256
Tssr94257 10 77564721 to 77564737 16 + TSS region transcription start site region 94257
Tssr94258 10 77564751 to 77564773 22 + TSS region transcription start site region 94258
Tssr94259 10 77565388 to 77565410 22 + TSS region transcription start site region 94259
Tssr3262 10 77568670 to 77568678 8 - TSS region transcription start site region 3262
D10Jhu55 10 77575675 to 77575777 102 DNA segment DNA segment, Chr 10, Johns Hopkins University 55
Cpgi1759 10 77581322 to 77582257 935 CpG island CpG island 1759
Tssr94260 10 77581324 to 77581335 11 + TSS region transcription start site region 94260
Tssr94261 10 77581730 to 77581741 11 + TSS region transcription start site region 94261
Tssr94262 10 77581745 to 77581769 24 + TSS region transcription start site region 94262
Pttg1ip 10 77581767 to 77598732 16965 + protein coding gene pituitary tumor-transforming 1 interacting protein
Tssr94263 10 77581774 to 77581800 26 + TSS region transcription start site region 94263
Tssr94264 10 77582387 to 77582431 44 + TSS region transcription start site region 94264
Tssr98238 10 77582572 to 77582612 40 - TSS region transcription start site region 98238
D10Jhu27 10 77585981 to 77586203 222 DNA segment DNA segment, Chr 10, Johns Hopkins University 27
D10Jhu54 10 77604511 to 77604769 258 DNA segment DNA segment, Chr 10, Johns Hopkins University 54
Cpgi1760 10 77605530 to 77607072 1542 CpG island CpG island 1760
Tssr94265 10 77606044 to 77606067 23 + TSS region transcription start site region 94265
Sumo3 10 77606097 to 77618331 12234 + protein coding gene small ubiquitin-like modifier 3
Gm49325 10 77606197 to 77641543 35346 + protein coding gene predicted gene, 49325
Tssr94266 10 77606217 to 77606240 23 + TSS region transcription start site region 94266
Tssr94267 10 77606244 to 77606255 11 + TSS region transcription start site region 94267
Tssr94268 10 77606578 to 77606653 75 + TSS region transcription start site region 94268
Tssr94269 10 77606661 to 77606680 19 + TSS region transcription start site region 94269
Tssr94270 10 77606695 to 77606718 23 + TSS region transcription start site region 94270
Tssr98239 10 77607113 to 77607119 6 - TSS region transcription start site region 98239
Tssr94271 10 77613731 to 77613770 39 + TSS region transcription start site region 94271
Tssr94272 10 77613809 to 77613820 11 + TSS region transcription start site region 94272
Tssr94273 10 77616211 to 77616236 25 + TSS region transcription start site region 94273
Tssr94274 10 77616419 to 77616469 50 + TSS region transcription start site region 94274
Cpgi1761 10 77621895 to 77622912 1017 CpG island CpG island 1761
Tssr94275 10 77622291 to 77622361 70 + TSS region transcription start site region 94275
Ube2g2 10 77622321 to 77645990 23669 + protein coding gene ubiquitin-conjugating enzyme E2G 2
Tssr94276 10 77622363 to 77622374 11 + TSS region transcription start site region 94276
Tssr94277 10 77630140 to 77630147 7 + TSS region transcription start site region 94277
Tssr94278 10 77630152 to 77630158 6 + TSS region transcription start site region 94278
Gm46236 10 77638510 to 77641059 2549 - pseudogene predicted gene, 46236
Mir1930 10 77641224 to 77641307 83 + miRNA gene microRNA 1930
Gm18119 10 77652747 to 77653359 612 - pseudogene predicted gene, 18119
Cpgi1762 10 77663864 to 77664695 831 CpG island CpG island 1762
Cpgi1763 10 77677403 to 77678133 730 CpG island CpG island 1763
Gm48160 10 77680597 to 77681087 490 - pseudogene predicted gene, 48160
Tssr94279 10 77686092 to 77686096 4 + TSS region transcription start site region 94279
Tspear 10 77686569 to 77887021 200452 + protein coding gene thrombospondin type laminin G domain and EAR repeats
Tssr94280 10 77686597 to 77686608 11 + TSS region transcription start site region 94280
Gm19402 10 77689957 to 77690757 800 - protein coding gene predicted gene, 19402
Tssr98240 10 77690807 to 77690812 5 - TSS region transcription start site region 98240
Gm9508 10 77696541 to 77697233 692 - protein coding gene predicted gene 9508
Tssr98241 10 77697287 to 77697289 2 - TSS region transcription start site region 98241
Tssr94281 10 77706588 to 77706591 3 + TSS region transcription start site region 94281
Gm10272 10 77706626 to 77706975 349 + pseudogene predicted gene 10272
Tssr94282 10 77711417 to 77711423 6 + TSS region transcription start site region 94282
Gm10024 10 77711457 to 77712009 552 + protein coding gene predicted gene 10024
Tssr94283 10 77715768 to 77715773 5 + TSS region transcription start site region 94283
Gm10142 10 77715807 to 77716169 362 + protein coding gene predicted gene 10142
Gm48179 10 77717896 to 77718418 522 - pseudogene predicted gene, 48179
Tssr94284 10 77720584 to 77720593 9 + TSS region transcription start site region 94284
Krtap12-1 10 77720599 to 77721254 655 + protein coding gene keratin associated protein 12-1
Tssr94285 10 77726449 to 77726452 3 + TSS region transcription start site region 94285
Gm10100 10 77726486 to 77726848 362 + protein coding gene predicted gene 10100
Gm48180 10 77734841 to 77735155 314 - pseudogene predicted gene, 48180
Tssr98242 10 77735192 to 77735195 3 - TSS region transcription start site region 98242
D10Jhu25 10 77740505 to 77740608 103 DNA segment DNA segment, Chr 10, Johns Hopkins University 25
Gm18596 10 77741979 to 77742500 521 - pseudogene predicted gene, 18596
Tssr98243 10 77742678 to 77742683 5 - TSS region transcription start site region 98243
Gm48178 10 77749494 to 77749580 86 - pseudogene predicted gene, 48178
Gm9736 10 77750521 to 77751354 833 - protein coding gene predicted gene 9736
Tssr98244 10 77751420 to 77751425 5 - TSS region transcription start site region 98244
Gm3233 10 77758990 to 77759682 692 - protein coding gene predicted gene 3233
Tssr98245 10 77767350 to 77767358 8 - TSS region transcription start site region 98245
Gm3238 10 77770633 to 77771325 692 - protein coding gene predicted gene 3238
Gm7138 10 77776252 to 77776944 692 - protein coding gene predicted gene 7138
Tssr98246 10 77777009 to 77777016 7 - TSS region transcription start site region 98246
Gm3250 10 77781850 to 77782542 692 - protein coding gene predicted gene 3250
Gm7137 10 77787490 to 77788200 710 - protein coding gene predicted gene 7137
Tssr3263 10 77788268 to 77788274 6 - TSS region transcription start site region 3263
Gm9639 10 77794399 to 77795076 677 - protein coding gene predicted gene 9639
Tssr98247 10 77795123 to 77795128 5 - TSS region transcription start site region 98247
D10Jhu50 10 77796449 to 77796779 330 DNA segment DNA segment, Chr 10, Johns Hopkins University 50
Gm19668 10 77798387 to 77799133 746 - protein coding gene predicted gene, 19668
Tssr98248 10 77799185 to 77799191 6 - TSS region transcription start site region 98248
Gm9507 10 77810967 to 77811843 876 - protein coding gene predicted gene 9507
Tssr98249 10 77811884 to 77811890 6 - TSS region transcription start site region 98249
Tssr94286 10 77814620 to 77814624 4 + TSS region transcription start site region 94286
Gm49918 10 77814682 to 77836652 21970 + protein coding gene predicted gene, 49918
Gm2696 10 77814682 to 77815404 722 + protein coding gene predicted gene 2696
D10Jhu49 10 77815740 to 77816003 263 DNA segment DNA segment, Chr 10, Johns Hopkins University 49
Krtap10-4 10 77826169 to 77827070 901 - protein coding gene keratin associated protein 10-4
Tssr98250 10 77827092 to 77827097 5 - TSS region transcription start site region 98250
Tssr94287 10 77835938 to 77835956 18 + TSS region transcription start site region 94287
Krtap10-10 10 77835947 to 77837251 1304 + protein coding gene keratin associated protein 10-10
Tssr94288 10 77836291 to 77836306 15 + TSS region transcription start site region 94288
Tssr94289 10 77837481 to 77837483 2 + TSS region transcription start site region 94289
Tssr94290 10 77837566 to 77837571 5 + TSS region transcription start site region 94290
Tssr94291 10 77837584 to 77837593 9 + TSS region transcription start site region 94291
Tssr94292 10 77837617 to 77837624 7 + TSS region transcription start site region 94292
Tssr94293 10 77837665 to 77837674 9 + TSS region transcription start site region 94293
Tssr94294 10 77837828 to 77837833 5 + TSS region transcription start site region 94294
Tssr94295 10 77838354 to 77838366 12 + TSS region transcription start site region 94295
Gm36176 10 77846803 to 77847303 500 + protein coding gene predicted gene, 36176
Tssr94296 10 77852810 to 77852816 6 + TSS region transcription start site region 94296
Gm10318 10 77852859 to 77853788 929 + protein coding gene predicted gene 10318
Tssr94297 10 77861951 to 77861956 5 + TSS region transcription start site region 94297
Gm3285 10 77861975 to 77862638 663 + protein coding gene predicted gene 3285
Tssr94298 10 77862262 to 77862280 18 + TSS region transcription start site region 94298
Tssr94299 10 77864607 to 77864643 36 + TSS region transcription start site region 94299
Cpgi1764 10 77864669 to 77864915 246 CpG island CpG island 1764
Tssr3264 10 77874574 to 77874577 3 + TSS region transcription start site region 3264
D10Jhu48 10 77878566 to 77878846 280 DNA segment DNA segment, Chr 10, Johns Hopkins University 48
Tssr3265 10 77880083 to 77880086 3 + TSS region transcription start site region 3265
Tssr94300 10 77893056 to 77893089 33 + TSS region transcription start site region 94300