Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:76090295-76602257

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc5a4b 10 76058618 to 76111018 52400 - protein coding gene solute carrier family 5 (neutral amino acid transporters, system A), member 4b
Tssr98164 10 76097568 to 76097571 3 - TSS region transcription start site region 98164
Tssr98165 10 76110956 to 76110962 6 - TSS region transcription start site region 98165
D10Jhu66 10 76118504 to 76118790 286 DNA segment DNA segment, Chr 10, Johns Hopkins University 66
Gm19217 10 76133434 to 76137291 3857 + pseudogene predicted gene, 19217
Slc5a4a 10 76147451 to 76189265 41814 + protein coding gene solute carrier family 5, member 4a
Tssr94167 10 76147503 to 76147515 12 + TSS region transcription start site region 94167
D10Mit174 10 76155848 to 76155993 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 174
Gm2628 10 76198194 to 76198981 787 - pseudogene predicted gene 2628
Cpgi1741 10 76203664 to 76203966 302 CpG island CpG island 1741
Del(10Prmt2-Cstb)4Yah 10 76207226 to 78427622 2220396 complex/cluster/region deletion, Chr10, Yann Herault 4
Prmt2 10 76207226 to 76237865 30639 - protein coding gene protein arginine N-methyltransferase 2
Dp(10Prmt2-Pdxk)2Yey 10 76207226 to 78464948 2257722 chromosomal duplication duplication, Chr 10, Y Eugene Yu 2
Del(10Prmt2-Col6a1)1Yah 10 76207226 to 76726044 518818 complex/cluster/region deletion, Chr10, Yann Herault 1
Del(10Prmt2-Pdxk)4Yey 10 76207226 to 78464948 2257722 chromosomal deletion deletion, Chr 10, Y Eugene Yu 4
Mir678 10 76207326 to 76207409 83 - miRNA gene microRNA 678
Cpgi1742 10 76237445 to 76238255 810 CpG island CpG island 1742
Tssr98166 10 76237789 to 76237796 7 - TSS region transcription start site region 98166
Tssr98167 10 76237822 to 76237867 45 - TSS region transcription start site region 98167
Tssr3252 10 76253817 to 76253822 5 + TSS region transcription start site region 3252
Tssr94168 10 76253848 to 76253866 18 + TSS region transcription start site region 94168
S100b 10 76253853 to 76261159 7306 + protein coding gene S100 protein, beta polypeptide, neural
Tssr94169 10 76253899 to 76253915 16 + TSS region transcription start site region 94169
Dip2a 10 76263049 to 76345291 82242 - protein coding gene disco interacting protein 2 homolog A
Tssr94170 10 76293148 to 76293163 15 + TSS region transcription start site region 94170
Gm16240 10 76293165 to 76294860 1695 + antisense lncRNA gene predicted gene 16240
Cpgi1743 10 76344482 to 76345701 1219 CpG island CpG island 1743
Tssr98168 10 76345254 to 76345371 117 - TSS region transcription start site region 98168
Gm40699 10 76345381 to 76347257 1876 + lncRNA gene predicted gene, 40699
Tssr94171 10 76345442 to 76345457 15 + TSS region transcription start site region 94171
Pcnt 10 76351263 to 76442786 91523 - protein coding gene pericentrin (kendrin)
Cpgi1744 10 76354821 to 76355083 262 CpG island CpG island 1744
Tssr98169 10 76388715 to 76388718 3 - TSS region transcription start site region 98169
Tssr94172 10 76388837 to 76388847 10 + TSS region transcription start site region 94172
Tssr98170 10 76388878 to 76388906 28 - TSS region transcription start site region 98170
1700094J05Rik 10 76389015 to 76401507 12492 + antisense lncRNA gene RIKEN cDNA 1700094J05 gene
D10Jhu19 10 76400690 to 76400905 215 DNA segment DNA segment, Chr 10, Johns Hopkins University 19
D10Jhu63 10 76415389 to 76415769 380 DNA segment DNA segment, Chr 10, Johns Hopkins University 63
Tssr98171 10 76416781 to 76416804 23 - TSS region transcription start site region 98171
Tssr98172 10 76416860 to 76416876 16 - TSS region transcription start site region 98172
Tssr98173 10 76425451 to 76425454 3 - TSS region transcription start site region 98173
Cpgi1745 10 76442225 to 76443364 1139 CpG island CpG island 1745
Tssr3253 10 76442239 to 76442281 42 - TSS region transcription start site region 3253
Tssr94173 10 76442368 to 76442393 25 + TSS region transcription start site region 94173
Gm9744 10 76442371 to 76443867 1496 protein coding gene predicted gene 9744
Tssr94174 10 76442416 to 76442425 9 + TSS region transcription start site region 94174
Tssr98174 10 76442649 to 76442672 23 - TSS region transcription start site region 98174
Tssr98175 10 76442679 to 76442697 18 - TSS region transcription start site region 98175
Tssr98176 10 76442734 to 76442756 22 - TSS region transcription start site region 98176
Tssr98177 10 76442758 to 76442813 55 - TSS region transcription start site region 98177
Tssr94175 10 76447379 to 76447386 7 + TSS region transcription start site region 94175
Tssr94176 10 76449057 to 76449068 11 + TSS region transcription start site region 94176
Tssr94177 10 76449074 to 76449093 19 + TSS region transcription start site region 94177
2610028H24Rik 10 76449081 to 76461110 12029 + protein coding gene RIKEN cDNA 2610028H24 gene
Tssr94178 10 76449095 to 76449109 14 + TSS region transcription start site region 94178
Tssr94179 10 76449121 to 76449135 14 + TSS region transcription start site region 94179
Tssr94180 10 76452911 to 76452914 3 + TSS region transcription start site region 94180
Ybey 10 76459567 to 76469114 9547 - protein coding gene ybeY metallopeptidase
Cpgi1746 10 76468563 to 76469149 586 CpG island CpG island 1746
Tssr98178 10 76468811 to 76468868 57 - TSS region transcription start site region 98178
Tssr94181 10 76468866 to 76468993 127 + TSS region transcription start site region 94181
Mcm3ap 10 76468971 to 76515859 46888 + protein coding gene minichromosome maintenance complex component 3 associated protein
Tssr94182 10 76469076 to 76469086 10 + TSS region transcription start site region 94182
Tssr94183 10 76481032 to 76481042 10 + TSS region transcription start site region 94183
Tssr94184 10 76481050 to 76481094 44 + TSS region transcription start site region 94184
Tssr94185 10 76481101 to 76481127 26 + TSS region transcription start site region 94185
Cpgi1747 10 76531080 to 76532020 940 CpG island CpG island 1747
Lss 10 76531588 to 76557138 25550 + protein coding gene lanosterol synthase
Tssr94186 10 76531593 to 76531635 42 + TSS region transcription start site region 94186
Tssr94187 10 76531637 to 76531657 20 + TSS region transcription start site region 94187
4930483K19Rik 10 76545871 to 76562226 16355 - antisense lncRNA gene RIKEN cDNA 4930483K19 gene
Tssr94188 10 76562256 to 76562267 11 + TSS region transcription start site region 94188
Tssr94189 10 76562270 to 76562328 58 + TSS region transcription start site region 94189
Spatc1l 10 76562272 to 76570201 7929 + protein coding gene spermatogenesis and centriole associated 1 like
Gm15343 10 76564765 to 76570532 5767 - antisense lncRNA gene predicted gene 15343
Cpgi1748 10 76569600 to 76570154 554 CpG island CpG island 1748
Tssr98179 10 76570433 to 76570455 22 - TSS region transcription start site region 98179
Tssr94190 10 76575640 to 76575656 16 + TSS region transcription start site region 94190
Ftcd 10 76575648 to 76590338 14690 + protein coding gene formiminotransferase cyclodeaminase
Tssr94191 10 76576398 to 76576419 21 + TSS region transcription start site region 94191
Tssr94192 10 76581535 to 76581546 11 + TSS region transcription start site region 94192
Tssr94193 10 76583875 to 76583882 7 + TSS region transcription start site region 94193
Tssr94194 10 76583892 to 76583900 8 + TSS region transcription start site region 94194
Col6a2 10 76595762 to 76623630 27868 - protein coding gene collagen, type VI, alpha 2
Tssr98180 10 76595919 to 76595945 26 - TSS region transcription start site region 98180
Tssr94195 10 76595965 to 76596010 45 + TSS region transcription start site region 94195
Tssr98181 10 76596018 to 76596090 72 - TSS region transcription start site region 98181
Tssr98182 10 76596156 to 76596181 25 - TSS region transcription start site region 98182
Cpgi1749 10 76596182 to 76596805 623 CpG island CpG island 1749
Tssr98183 10 76596385 to 76596402 17 - TSS region transcription start site region 98183
Tssr98184 10 76596450 to 76596484 34 - TSS region transcription start site region 98184
Tssr98185 10 76596658 to 76596675 17 - TSS region transcription start site region 98185
Tssr98186 10 76599333 to 76599381 48 - TSS region transcription start site region 98186
Tssr98187 10 76599411 to 76599429 18 - TSS region transcription start site region 98187
Tssr98188 10 76599706 to 76599718 12 - TSS region transcription start site region 98188