Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:75622313-76052332

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40695 10 75632351 to 75636405 4054 - lncRNA gene predicted gene, 40695
D10Jhu71e 10 75635968 to 75636200 232 DNA segment DNA segment, Chr 10, Johns Hopkins University 71 expressed
Susd2 10 75636706 to 75644008 7302 - protein coding gene sushi domain containing 2
Tssr98115 10 75643971 to 75643986 15 - TSS region transcription start site region 98115
Tssr3249 10 75643994 to 75643995 1 - TSS region transcription start site region 3249
Cabin1 10 75646112 to 75764341 118229 - protein coding gene calcineurin binding protein 1
Cpgi1727 10 75667070 to 75668335 1265 CpG island CpG island 1727
Tssr98116 10 75667579 to 75667616 37 - TSS region transcription start site region 98116
Tssr98117 10 75668032 to 75668046 14 - TSS region transcription start site region 98117
Tssr98118 10 75668049 to 75668101 52 - TSS region transcription start site region 98118
Bsc1 10 75681135 to 75681262 127 QTL brain size control 1
D10Mit186 10 75681135 to 75681262 127 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 186
Gm40696 10 75695055 to 75709263 14208 + lncRNA gene predicted gene, 40696
D10Jhu70 10 75743211 to 75743506 295 DNA segment DNA segment, Chr 10, Johns Hopkins University 70
Cpgi1728 10 75763796 to 75764717 921 CpG island CpG island 1728
Tssr98119 10 75764182 to 75764238 56 - TSS region transcription start site region 98119
Tssr98120 10 75764265 to 75764359 94 - TSS region transcription start site region 98120
Tssr94136 10 75764443 to 75764477 34 + TSS region transcription start site region 94136
Gm19326 10 75767161 to 75767486 325 + pseudogene predicted gene, 19326
Ddt 10 75771233 to 75773374 2141 - protein coding gene D-dopachrome tautomerase
Gm20441 10 75771451 to 75780954 9503 - protein coding gene predicted gene 20441
Cpgi1729 10 75772706 to 75773379 673 CpG island CpG island 1729
Tssr98121 10 75773350 to 75773434 84 - TSS region transcription start site region 98121
Gstt3 10 75774122 to 75781414 7292 - protein coding gene glutathione S-transferase, theta 3
D10Jhu69 10 75779313 to 75779466 153 DNA segment DNA segment, Chr 10, Johns Hopkins University 69
D10Mit158 10 75780308 to 75780408 100 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 158
Cpgi1730 10 75780796 to 75781238 442 CpG island CpG island 1730
Tssr98122 10 75781036 to 75781110 74 - TSS region transcription start site region 98122
Tssr98123 10 75781392 to 75781410 18 - TSS region transcription start site region 98123
Tssr98124 10 75781411 to 75781434 23 - TSS region transcription start site region 98124
Gstt1 10 75783813 to 75798584 14771 - protein coding gene glutathione S-transferase, theta 1
Tssr98125 10 75789930 to 75789957 27 - TSS region transcription start site region 98125
Tssr98126 10 75797528 to 75797536 8 - TSS region transcription start site region 98126
Tssr98127 10 75797728 to 75797757 29 - TSS region transcription start site region 98127
Tssr98128 10 75797760 to 75797776 16 - TSS region transcription start site region 98128
Tssr98129 10 75798517 to 75798553 36 - TSS region transcription start site region 98129
Tssr98130 10 75798576 to 75798587 11 - TSS region transcription start site region 98130
D10Mit241 10 75813788 to 75813929 141 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 241
Gstt4 10 75814943 to 75822543 7600 - protein coding gene glutathione S-transferase, theta 4
Tssr98131 10 75822489 to 75822511 22 - TSS region transcription start site region 98131
Tssr3250 10 75822514 to 75822515 1 - TSS region transcription start site region 3250
Tssr98132 10 75822521 to 75822548 27 - TSS region transcription start site region 98132
Gstt2 10 75831842 to 75837419 5577 - protein coding gene glutathione S-transferase, theta 2
Cpgi1731 10 75834133 to 75834683 550 CpG island CpG island 1731
Tssr98133 10 75834402 to 75834432 30 - TSS region transcription start site region 98133
Tssr98134 10 75834435 to 75834494 59 - TSS region transcription start site region 98134
Tssr94137 10 75835051 to 75835054 3 + TSS region transcription start site region 94137
Tssr98135 10 75835358 to 75835373 15 - TSS region transcription start site region 98135
Tssr98136 10 75835541 to 75835597 56 - TSS region transcription start site region 98136
Tssr94138 10 75835971 to 75835980 9 + TSS region transcription start site region 94138
4933425E08Rik 10 75835975 to 75837423 1448 unclassified gene RIKEN cDNA 4933425E08 gene
Cpgi1732 10 75837130 to 75837651 521 CpG island CpG island 1732
Tssr98137 10 75837313 to 75837332 19 - TSS region transcription start site region 98137
Tssr98138 10 75837340 to 75837383 43 - TSS region transcription start site region 98138
Tssr98139 10 75837412 to 75837427 15 - TSS region transcription start site region 98139
Tssr94139 10 75837467 to 75837476 9 + TSS region transcription start site region 94139
Tssr94140 10 75837513 to 75837530 17 + TSS region transcription start site region 94140
Tssr94141 10 75837534 to 75837553 19 + TSS region transcription start site region 94141
Tssr94142 10 75841962 to 75841965 3 + TSS region transcription start site region 94142
Tssr94143 10 75842538 to 75842542 4 + TSS region transcription start site region 94143
Tssr3251 10 75853248 to 75853252 4 + TSS region transcription start site region 3251
Tssr94144 10 75853600 to 75853603 3 + TSS region transcription start site region 94144
Mif 10 75859353 to 75860240 887 - protein coding gene macrophage migration inhibitory factor (glycosylation-inhibiting factor)
Cpgi1733 10 75859532 to 75860471 939 CpG island CpG island 1733
Tssr98140 10 75859965 to 75860039 74 - TSS region transcription start site region 98140
Tssr98141 10 75860214 to 75860221 7 - TSS region transcription start site region 98141
Tssr98142 10 75860254 to 75860289 35 - TSS region transcription start site region 98142
Tssr98143 10 75860299 to 75860310 11 - TSS region transcription start site region 98143
Gm40697 10 75860404 to 75861698 1294 + lncRNA gene predicted gene, 40697
Gm47744 10 75875431 to 75875804 373 + pseudogene predicted gene, 47744
Tssr98144 10 75893002 to 75893009 7 - TSS region transcription start site region 98144
Tssr98145 10 75893061 to 75893082 21 - TSS region transcription start site region 98145
Cpgi1734 10 75893067 to 75894077 1010 CpG island CpG island 1734
Tssr94145 10 75893403 to 75893429 26 + TSS region transcription start site region 94145
Derl3 10 75893413 to 75895941 2528 + protein coding gene Der1-like domain family, member 3
Tssr94146 10 75893443 to 75893452 9 + TSS region transcription start site region 94146
Smarcb1 10 75896769 to 75921614 24845 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
Tssr98146 10 75904451 to 75904456 5 - TSS region transcription start site region 98146
D10Jhu68 10 75909485 to 75909691 206 DNA segment DNA segment, Chr 10, Johns Hopkins University 68
Tssr98147 10 75909929 to 75909934 5 - TSS region transcription start site region 98147
Tssr98148 10 75920202 to 75920206 4 - TSS region transcription start site region 98148
Cpgi1735 10 75920874 to 75922123 1249 CpG island CpG island 1735
Tssr98149 10 75921404 to 75921415 11 - TSS region transcription start site region 98149
Tssr98150 10 75921418 to 75921440 22 - TSS region transcription start site region 98150
Tssr98151 10 75921546 to 75921553 7 - TSS region transcription start site region 98151
Tssr98152 10 75921562 to 75921625 63 - TSS region transcription start site region 98152
Mmp11 10 75923221 to 75932502 9281 - protein coding gene matrix metallopeptidase 11
Cpgi1736 10 75932093 to 75932877 784 CpG island CpG island 1736
Tssr98153 10 75932468 to 75932484 16 - TSS region transcription start site region 98153
Chchd10 10 75933130 to 75937747 4617 + protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 10
Tssr94147 10 75933319 to 75933353 34 + TSS region transcription start site region 94147
Tssr94148 10 75933356 to 75933377 21 + TSS region transcription start site region 94148
Cpgi1737 10 75935647 to 75936440 793 CpG island CpG island 1737
Tssr94149 10 75935856 to 75935872 16 + TSS region transcription start site region 94149
Tssr94150 10 75935878 to 75935908 30 + TSS region transcription start site region 94150
Tssr94151 10 75936226 to 75936259 33 + TSS region transcription start site region 94151
Tssr94152 10 75936274 to 75936292 18 + TSS region transcription start site region 94152
Tssr94153 10 75936305 to 75936322 17 + TSS region transcription start site region 94153
Tssr94154 10 75936324 to 75936333 9 + TSS region transcription start site region 94154
Tssr94155 10 75936404 to 75936417 13 + TSS region transcription start site region 94155
Tssr94156 10 75937162 to 75937174 12 + TSS region transcription start site region 94156
Tssr94157 10 75937176 to 75937195 19 + TSS region transcription start site region 94157
Tssr94158 10 75937297 to 75937333 36 + TSS region transcription start site region 94158
Gm867 10 75937723 to 75940672 2949 - protein coding gene predicted gene 867
Tssr98154 10 75938388 to 75938393 5 - TSS region transcription start site region 98154
Tssr98155 10 75939964 to 75940002 38 - TSS region transcription start site region 98155
Tssr98156 10 75940004 to 75940023 19 - TSS region transcription start site region 98156
Tssr98157 10 75940040 to 75940047 7 - TSS region transcription start site region 98157
Tssr98158 10 75940566 to 75940578 12 - TSS region transcription start site region 98158
Tssr98159 10 75940603 to 75940623 20 - TSS region transcription start site region 98159
Tssr98160 10 75940633 to 75940683 50 - TSS region transcription start site region 98160
Tssr94159 10 75943020 to 75943028 8 + TSS region transcription start site region 94159
Tssr94160 10 75943046 to 75943063 17 + TSS region transcription start site region 94160
Gm16221 10 75945295 to 75945687 392 - pseudogene predicted gene 16221
Tssr94161 10 75948292 to 75948333 41 + TSS region transcription start site region 94161
Vpreb3 10 75948312 to 75949648 1336 + protein coding gene pre-B lymphocyte gene 3
Tssr94162 10 75948335 to 75948353 18 + TSS region transcription start site region 94162
Cpgi1738 10 75950581 to 75951329 748 CpG island CpG island 1738
Gm40698 10 75953850 to 75954285 435 - lncRNA gene predicted gene, 40698
Cpgi1739 10 75954394 to 75954741 347 CpG island CpG island 1739
Gm5134 10 75954514 to 76009591 55077 + protein coding gene predicted gene 5134
Tssr94163 10 75954521 to 75954548 27 + TSS region transcription start site region 94163
Gm16219 10 75969898 to 75970171 273 + pseudogene predicted gene 16219
Gm16220 10 75992691 to 75993992 1301 - antisense lncRNA gene predicted gene 16220
Tssr94164 10 75993798 to 75993817 19 + TSS region transcription start site region 94164
Tssr98161 10 75994036 to 75994065 29 - TSS region transcription start site region 98161
Mir6409 10 76008926 to 76009017 91 + miRNA gene microRNA 6409
Tssr98162 10 76027025 to 76027030 5 - TSS region transcription start site region 98162
Tssr98163 10 76028064 to 76028091 27 - TSS region transcription start site region 98163
Cpgi1740 10 76032383 to 76033058 675 CpG island CpG island 1740
Zfp280b 10 76032401 to 76042970 10569 + protein coding gene zinc finger protein 280B
Tssr94165 10 76032598 to 76032660 62 + TSS region transcription start site region 94165
Tssr94166 10 76032665 to 76032699 34 + TSS region transcription start site region 94166