Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:75233067-76554077

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301 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Specc1l 10 75212037 to 75312400 100363 + protein coding gene sperm antigen with calponin homology and coiled-coil domains 1-like
Tssr94086 10 75241155 to 75241176 21 + TSS region transcription start site region 94086
D10Mit91 10 75250410 to 75250558 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 91
Tssr98104 10 75273202 to 75273211 9 - TSS region transcription start site region 98104
Tssr94087 10 75273350 to 75273370 20 + TSS region transcription start site region 94087
Tssr94088 10 75278310 to 75278315 5 + TSS region transcription start site region 94088
Gm46234 10 75282777 to 75283035 258 - pseudogene predicted gene, 46234
D10Mit225 10 75300146 to 75300266 120 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 225
Tssr98105 10 75301996 to 75302005 9 - TSS region transcription start site region 98105
Tssr98106 10 75303334 to 75303374 40 - TSS region transcription start site region 98106
Tssr94089 10 75303617 to 75303624 7 + TSS region transcription start site region 94089
Cpgi1719 10 75316665 to 75317937 1272 CpG island CpG island 1719
Tssr94090 10 75316725 to 75316736 11 + TSS region transcription start site region 94090
Tssr94091 10 75316871 to 75316882 11 + TSS region transcription start site region 94091
Adora2a 10 75316877 to 75334784 17907 + protein coding gene adenosine A2a receptor
Tssr94092 10 75316895 to 75316904 9 + TSS region transcription start site region 94092
Tssr94093 10 75316917 to 75316955 38 + TSS region transcription start site region 94093
Tssr94094 10 75316964 to 75316988 24 + TSS region transcription start site region 94094
Tssr94095 10 75317054 to 75317073 19 + TSS region transcription start site region 94095
Tssr94096 10 75317076 to 75317124 48 + TSS region transcription start site region 94096
Tssr98107 10 75317563 to 75317574 11 - TSS region transcription start site region 98107
Tssr94097 10 75324929 to 75324937 8 + TSS region transcription start site region 94097
Tssr94098 10 75324941 to 75324963 22 + TSS region transcription start site region 94098
Tssr94099 10 75324968 to 75324979 11 + TSS region transcription start site region 94099
Tssr94100 10 75324982 to 75324989 7 + TSS region transcription start site region 94100
Cpgi1720 10 75326119 to 75326318 199 CpG island CpG island 1720
Cpgi1721 10 75333312 to 75333685 373 CpG island CpG island 1721
Tssr3246 10 75351979 to 75351986 7 + TSS region transcription start site region 3246
Gm5779 10 75352055 to 75352961 906 + pseudogene predicted gene 5779
Gm40694 10 75400745 to 75402251 1506 + lncRNA gene predicted gene, 40694
Upb1 10 75406911 to 75441679 34768 + protein coding gene ureidopropionase, beta
Tssr3247 10 75406933 to 75406936 3 + TSS region transcription start site region 3247
Tssr94101 10 75406941 to 75406954 13 + TSS region transcription start site region 94101
Tssr94102 10 75406967 to 75406974 7 + TSS region transcription start site region 94102
Tssr94103 10 75407005 to 75407022 17 + TSS region transcription start site region 94103
Tssr94104 10 75410019 to 75410054 35 + TSS region transcription start site region 94104
Tssr94105 10 75430047 to 75430057 10 + TSS region transcription start site region 94105
Tssr98108 10 75434447 to 75434471 24 - TSS region transcription start site region 98108
Gm25545 10 75442620 to 75442942 322 + unclassified non-coding RNA gene predicted gene, 25545
Cpgi1722 10 75444247 to 75444460 213 CpG island CpG island 1722
4933407G14Rik 10 75449510 to 75463104 13594 + lncRNA gene RIKEN cDNA 4933407G14 gene
Gm48158 10 75483090 to 75483392 302 - pseudogene predicted gene, 48158
Gm48148 10 75496061 to 75496159 98 + pseudogene predicted gene, 48148
Gucd1 10 75506814 to 75517967 11153 - protein coding gene guanylyl cyclase domain containing 1
Cpgi1723 10 75516896 to 75518487 1591 CpG island CpG island 1723
Tssr98109 10 75517248 to 75517265 17 - TSS region transcription start site region 98109
Tssr98110 10 75517273 to 75517309 36 - TSS region transcription start site region 98110
Tssr98111 10 75517324 to 75517362 38 - TSS region transcription start site region 98111
Tssr94106 10 75517545 to 75517557 12 + TSS region transcription start site region 94106
Tssr98112 10 75517869 to 75517887 18 - TSS region transcription start site region 98112
Tssr3248 10 75517958 to 75517977 19 - TSS region transcription start site region 3248
Tssr94107 10 75518011 to 75518029 18 + TSS region transcription start site region 94107
Tssr94108 10 75518030 to 75518041 11 + TSS region transcription start site region 94108
Tssr94109 10 75518042 to 75518046 4 + TSS region transcription start site region 94109
Snrpd3 10 75518042 to 75535440 17398 + protein coding gene small nuclear ribonucleoprotein D3
Gm35061 10 75526285 to 75526942 657 - pseudogene predicted gene, 35061
D10Mit287a 10 75528061 to 75528159 98 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 287a
D10Mit287b 10 75528061 to 75528207 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 287b
Tssr94110 10 75532008 to 75532026 18 + TSS region transcription start site region 94110
Lrrc75b 10 75550123 to 75560330 10207 - protein coding gene leucine rich repeat containing 75B
Cpgi1724 10 75559299 to 75560755 1456 CpG island CpG island 1724
Tssr98113 10 75560081 to 75560099 18 - TSS region transcription start site region 98113
Tssr98114 10 75560108 to 75560124 16 - TSS region transcription start site region 98114
Tssr94111 10 75561269 to 75561279 10 + TSS region transcription start site region 94111
D10Jhu72 10 75562822 to 75563049 227 DNA segment DNA segment, Chr 10, Johns Hopkins University 72
Tssr94112 10 75564086 to 75564165 79 + TSS region transcription start site region 94112
Ggt1 10 75564114 to 75586192 22078 + protein coding gene gamma-glutamyltransferase 1
Tssr94113 10 75564168 to 75564179 11 + TSS region transcription start site region 94113
Tssr94114 10 75564181 to 75564197 16 + TSS region transcription start site region 94114
Tssr94115 10 75564198 to 75564217 19 + TSS region transcription start site region 94115
Tssr94116 10 75564584 to 75564601 17 + TSS region transcription start site region 94116
Tssr94117 10 75566172 to 75566187 15 + TSS region transcription start site region 94117
Tssr94118 10 75566219 to 75566241 22 + TSS region transcription start site region 94118
Tssr94119 10 75566257 to 75566302 45 + TSS region transcription start site region 94119
Tssr94120 10 75568630 to 75568639 9 + TSS region transcription start site region 94120
Tssr94121 10 75568641 to 75568645 4 + TSS region transcription start site region 94121
Tssr94122 10 75568648 to 75568673 25 + TSS region transcription start site region 94122
Tssr94123 10 75571503 to 75571512 9 + TSS region transcription start site region 94123
Tssr94124 10 75571522 to 75571532 10 + TSS region transcription start site region 94124
Tssr94125 10 75571542 to 75571551 9 + TSS region transcription start site region 94125
Tssr94126 10 75571553 to 75571586 33 + TSS region transcription start site region 94126
Tssr94127 10 75573450 to 75573464 14 + TSS region transcription start site region 94127
Tssr94128 10 75573492 to 75573501 9 + TSS region transcription start site region 94128
Tssr94129 10 75573509 to 75573528 19 + TSS region transcription start site region 94129
Tssr94130 10 75574200 to 75574225 25 + TSS region transcription start site region 94130
Ggt5 10 75589324 to 75616968 27644 + protein coding gene gamma-glutamyltransferase 5
Tssr94131 10 75589338 to 75589343 5 + TSS region transcription start site region 94131
Tssr94132 10 75589352 to 75589355 3 + TSS region transcription start site region 94132
Tssr94133 10 75589363 to 75589390 27 + TSS region transcription start site region 94133
Tssr94134 10 75589423 to 75589437 14 + TSS region transcription start site region 94134
Tssr94135 10 75589461 to 75589483 22 + TSS region transcription start site region 94135
Cpgi1725 10 75589656 to 75590042 386 CpG island CpG island 1725
Gm9985 10 75590142 to 75590653 511 - pseudogene predicted gene 9985
Cpgi1726 10 75603815 to 75603997 182 CpG island CpG island 1726
Gm26402 10 75613157 to 75613269 112 - snRNA gene predicted gene, 26402
Gm19688 10 75619080 to 75619503 423 - pseudogene predicted gene, 19688
Gm40695 10 75632351 to 75636405 4054 - lncRNA gene predicted gene, 40695
D10Jhu71e 10 75635968 to 75636200 232 DNA segment DNA segment, Chr 10, Johns Hopkins University 71 expressed
Susd2 10 75636706 to 75644008 7302 - protein coding gene sushi domain containing 2
Tssr98115 10 75643971 to 75643986 15 - TSS region transcription start site region 98115
Tssr3249 10 75643994 to 75643995 1 - TSS region transcription start site region 3249
Cabin1 10 75646112 to 75764341 118229 - protein coding gene calcineurin binding protein 1
Cpgi1727 10 75667070 to 75668335 1265 CpG island CpG island 1727
Tssr98116 10 75667579 to 75667616 37 - TSS region transcription start site region 98116
Tssr98117 10 75668032 to 75668046 14 - TSS region transcription start site region 98117
Tssr98118 10 75668049 to 75668101 52 - TSS region transcription start site region 98118
D10Mit186 10 75681135 to 75681262 127 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 186
Bsc1 10 75681135 to 75681262 127 QTL brain size control 1
Gm40696 10 75695055 to 75709263 14208 + lncRNA gene predicted gene, 40696
D10Jhu70 10 75743211 to 75743506 295 DNA segment DNA segment, Chr 10, Johns Hopkins University 70
Cpgi1728 10 75763796 to 75764717 921 CpG island CpG island 1728
Tssr98119 10 75764182 to 75764238 56 - TSS region transcription start site region 98119
Tssr98120 10 75764265 to 75764359 94 - TSS region transcription start site region 98120
Tssr94136 10 75764443 to 75764477 34 + TSS region transcription start site region 94136
Gm19326 10 75767161 to 75767486 325 + pseudogene predicted gene, 19326
Ddt 10 75771233 to 75773374 2141 - protein coding gene D-dopachrome tautomerase
Gm20441 10 75771451 to 75780954 9503 - protein coding gene predicted gene 20441
Cpgi1729 10 75772706 to 75773379 673 CpG island CpG island 1729
Tssr98121 10 75773350 to 75773434 84 - TSS region transcription start site region 98121
Gstt3 10 75774122 to 75781414 7292 - protein coding gene glutathione S-transferase, theta 3
D10Jhu69 10 75779313 to 75779466 153 DNA segment DNA segment, Chr 10, Johns Hopkins University 69
D10Mit158 10 75780308 to 75780408 100 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 158
Cpgi1730 10 75780796 to 75781238 442 CpG island CpG island 1730
Tssr98122 10 75781036 to 75781110 74 - TSS region transcription start site region 98122
Tssr98123 10 75781392 to 75781410 18 - TSS region transcription start site region 98123
Tssr98124 10 75781411 to 75781434 23 - TSS region transcription start site region 98124
Gstt1 10 75783813 to 75798584 14771 - protein coding gene glutathione S-transferase, theta 1
Tssr98125 10 75789930 to 75789957 27 - TSS region transcription start site region 98125
Tssr98126 10 75797528 to 75797536 8 - TSS region transcription start site region 98126
Tssr98127 10 75797728 to 75797757 29 - TSS region transcription start site region 98127
Tssr98128 10 75797760 to 75797776 16 - TSS region transcription start site region 98128
Tssr98129 10 75798517 to 75798553 36 - TSS region transcription start site region 98129
Tssr98130 10 75798576 to 75798587 11 - TSS region transcription start site region 98130
D10Mit241 10 75813788 to 75813929 141 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 241
Gstt4 10 75814943 to 75822543 7600 - protein coding gene glutathione S-transferase, theta 4
Tssr98131 10 75822489 to 75822511 22 - TSS region transcription start site region 98131
Tssr3250 10 75822514 to 75822515 1 - TSS region transcription start site region 3250
Tssr98132 10 75822521 to 75822548 27 - TSS region transcription start site region 98132
Gstt2 10 75831842 to 75837419 5577 - protein coding gene glutathione S-transferase, theta 2
Cpgi1731 10 75834133 to 75834683 550 CpG island CpG island 1731
Tssr98133 10 75834402 to 75834432 30 - TSS region transcription start site region 98133
Tssr98134 10 75834435 to 75834494 59 - TSS region transcription start site region 98134
Tssr94137 10 75835051 to 75835054 3 + TSS region transcription start site region 94137
Tssr98135 10 75835358 to 75835373 15 - TSS region transcription start site region 98135
Tssr98136 10 75835541 to 75835597 56 - TSS region transcription start site region 98136
Tssr94138 10 75835971 to 75835980 9 + TSS region transcription start site region 94138
4933425E08Rik 10 75835975 to 75837423 1448 unclassified gene RIKEN cDNA 4933425E08 gene
Cpgi1732 10 75837130 to 75837651 521 CpG island CpG island 1732
Tssr98137 10 75837313 to 75837332 19 - TSS region transcription start site region 98137
Tssr98138 10 75837340 to 75837383 43 - TSS region transcription start site region 98138
Tssr98139 10 75837412 to 75837427 15 - TSS region transcription start site region 98139
Tssr94139 10 75837467 to 75837476 9 + TSS region transcription start site region 94139
Tssr94140 10 75837513 to 75837530 17 + TSS region transcription start site region 94140
Tssr94141 10 75837534 to 75837553 19 + TSS region transcription start site region 94141
Tssr94142 10 75841962 to 75841965 3 + TSS region transcription start site region 94142
Tssr94143 10 75842538 to 75842542 4 + TSS region transcription start site region 94143
Tssr3251 10 75853248 to 75853252 4 + TSS region transcription start site region 3251
Tssr94144 10 75853600 to 75853603 3 + TSS region transcription start site region 94144
Mif 10 75859353 to 75860240 887 - protein coding gene macrophage migration inhibitory factor (glycosylation-inhibiting factor)
Cpgi1733 10 75859532 to 75860471 939 CpG island CpG island 1733
Tssr98140 10 75859965 to 75860039 74 - TSS region transcription start site region 98140
Tssr98141 10 75860214 to 75860221 7 - TSS region transcription start site region 98141
Tssr98142 10 75860254 to 75860289 35 - TSS region transcription start site region 98142
Tssr98143 10 75860299 to 75860310 11 - TSS region transcription start site region 98143
Gm40697 10 75860404 to 75861698 1294 + lncRNA gene predicted gene, 40697
Gm47744 10 75875431 to 75875804 373 + pseudogene predicted gene, 47744
Tssr98144 10 75893002 to 75893009 7 - TSS region transcription start site region 98144
Tssr98145 10 75893061 to 75893082 21 - TSS region transcription start site region 98145
Cpgi1734 10 75893067 to 75894077 1010 CpG island CpG island 1734
Tssr94145 10 75893403 to 75893429 26 + TSS region transcription start site region 94145
Derl3 10 75893413 to 75895941 2528 + protein coding gene Der1-like domain family, member 3
Tssr94146 10 75893443 to 75893452 9 + TSS region transcription start site region 94146
Smarcb1 10 75896769 to 75921614 24845 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
Tssr98146 10 75904451 to 75904456 5 - TSS region transcription start site region 98146
D10Jhu68 10 75909485 to 75909691 206 DNA segment DNA segment, Chr 10, Johns Hopkins University 68
Tssr98147 10 75909929 to 75909934 5 - TSS region transcription start site region 98147
Tssr98148 10 75920202 to 75920206 4 - TSS region transcription start site region 98148
Cpgi1735 10 75920874 to 75922123 1249 CpG island CpG island 1735
Tssr98149 10 75921404 to 75921415 11 - TSS region transcription start site region 98149
Tssr98150 10 75921418 to 75921440 22 - TSS region transcription start site region 98150
Tssr98151 10 75921546 to 75921553 7 - TSS region transcription start site region 98151
Tssr98152 10 75921562 to 75921625 63 - TSS region transcription start site region 98152
Mmp11 10 75923221 to 75932502 9281 - protein coding gene matrix metallopeptidase 11
Cpgi1736 10 75932093 to 75932877 784 CpG island CpG island 1736
Tssr98153 10 75932468 to 75932484 16 - TSS region transcription start site region 98153
Chchd10 10 75933130 to 75937747 4617 + protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 10
Tssr94147 10 75933319 to 75933353 34 + TSS region transcription start site region 94147
Tssr94148 10 75933356 to 75933377 21 + TSS region transcription start site region 94148
Cpgi1737 10 75935647 to 75936440 793 CpG island CpG island 1737
Tssr94149 10 75935856 to 75935872 16 + TSS region transcription start site region 94149
Tssr94150 10 75935878 to 75935908 30 + TSS region transcription start site region 94150
Tssr94151 10 75936226 to 75936259 33 + TSS region transcription start site region 94151
Tssr94152 10 75936274 to 75936292 18 + TSS region transcription start site region 94152
Tssr94153 10 75936305 to 75936322 17 + TSS region transcription start site region 94153
Tssr94154 10 75936324 to 75936333 9 + TSS region transcription start site region 94154
Tssr94155 10 75936404 to 75936417 13 + TSS region transcription start site region 94155
Tssr94156 10 75937162 to 75937174 12 + TSS region transcription start site region 94156
Tssr94157 10 75937176 to 75937195 19 + TSS region transcription start site region 94157
Tssr94158 10 75937297 to 75937333 36 + TSS region transcription start site region 94158
Gm867 10 75937723 to 75940672 2949 - protein coding gene predicted gene 867