Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:73359247-77529460

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525 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcdh15 10 73099342 to 74649737 1550395 + protein coding gene protocadherin 15
Gm19168 10 73375490 to 73376019 529 - pseudogene predicted gene, 19168
Gm15397 10 73489974 to 73518390 28416 + sense intronic lncRNA gene predicted gene 15397
D10Mit199.1 10 73530776 to 73530897 121 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 199.1
D10Mit199 10 73530823 to 73531013 190 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 199
Gm6407 10 73690257 to 73690805 548 - pseudogene predicted gene 6407
Tssr98093 10 73691008 to 73691011 3 - TSS region transcription start site region 98093
Tssr94051 10 73779605 to 73779611 6 + TSS region transcription start site region 94051
Tssr94052 10 73821857 to 73821871 14 + TSS region transcription start site region 94052
Tssr94053 10 73821898 to 73821914 16 + TSS region transcription start site region 94053
Tssr94054 10 73821937 to 73821951 14 + TSS region transcription start site region 94054
Tssr94055 10 73821958 to 73821973 15 + TSS region transcription start site region 94055
Tssr94056 10 73822177 to 73822193 16 + TSS region transcription start site region 94056
Tssr94057 10 73845348 to 73845352 4 + TSS region transcription start site region 94057
A930019H14Rik 10 73887452 to 73888122 670 unclassified gene RIKEN cDNA A930019H14 gene
Tssr94058 10 73947026 to 73947071 45 + TSS region transcription start site region 94058
Tssr94059 10 74089764 to 74089766 2 + TSS region transcription start site region 94059
Tssr94060 10 74096158 to 74096162 4 + TSS region transcription start site region 94060
Gm40691 10 74127544 to 74136884 9340 - lncRNA gene predicted gene, 40691
Obrq12 10 74151384 to 82655287 8503903 QTL obesity resistance QTL 12
Tssr94061 10 74303105 to 74303155 50 + TSS region transcription start site region 94061
Tssr94062 10 74547864 to 74547888 24 + TSS region transcription start site region 94062
Clfrhl1 10 74612426 to 74612426 0 QTL click-frequency hearing loss 1
Mfhl1 10 74612426 to 74612426 0 QTL medium-frequency hearing loss 1
Lfhl1 10 74612426 to 74612426 0 QTL low-frequency hearing loss 1
Cpgi1713 10 74645521 to 74646008 487 CpG island CpG island 1713
Gm7034 10 74820722 to 74821366 644 + pseudogene predicted gene 7034
Gm6419 10 74862988 to 74863416 428 - pseudogene predicted gene 6419
Tssr98094 10 74863509 to 74863513 4 - TSS region transcription start site region 98094
D10Mit64 10 74874441 to 74874606 165 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 64
Cpgi1714 10 74925382 to 74925857 475 CpG island CpG island 1714
Rsph14 10 74957477 to 75032586 75109 - protein coding gene radial spoke head homolog 14 (Chlamydomonas)
Cpgi1715 10 74966572 to 74968186 1614 CpG island CpG island 1715
Tssr94063 10 74967084 to 74967098 14 + TSS region transcription start site region 94063
Tssr94064 10 74967127 to 74967162 35 + TSS region transcription start site region 94064
Tssr94065 10 74967164 to 74967203 39 + TSS region transcription start site region 94065
Gnaz 10 74967177 to 75016907 49730 + protein coding gene guanine nucleotide binding protein, alpha z subunit
Tssr94066 10 74978632 to 74978635 3 + TSS region transcription start site region 94066
Tssr94067 10 75015308 to 75015332 24 + TSS region transcription start site region 94067
Tssr98095 10 75032538 to 75032588 50 - TSS region transcription start site region 98095
Gm40692 10 75034345 to 75035027 682 + lncRNA gene predicted gene, 40692
Cpgi1716 10 75036877 to 75037446 569 CpG island CpG island 1716
Rab36 10 75037058 to 75054748 17690 + protein coding gene RAB36, member RAS oncogene family
Tssr94068 10 75037077 to 75037100 23 + TSS region transcription start site region 94068
Tssr94069 10 75037244 to 75037288 44 + TSS region transcription start site region 94069
Tssr94070 10 75037291 to 75037332 41 + TSS region transcription start site region 94070
Tssr98096 10 75052983 to 75053006 23 - TSS region transcription start site region 98096
Tssr98097 10 75053011 to 75053022 11 - TSS region transcription start site region 98097
Cpgi1717 10 75060022 to 75062380 2358 CpG island CpG island 1717
Tssr94071 10 75060551 to 75060628 77 + TSS region transcription start site region 94071
Tssr94072 10 75060823 to 75060848 25 + TSS region transcription start site region 94072
Tssr94073 10 75060885 to 75060901 16 + TSS region transcription start site region 94073
Bcr 10 75060896 to 75184923 124027 + protein coding gene breakpoint cluster region
Tssr94074 10 75098454 to 75098455 1 + TSS region transcription start site region 94074
Tssr94075 10 75130567 to 75130631 64 + TSS region transcription start site region 94075
Tssr94076 10 75130981 to 75131001 20 + TSS region transcription start site region 94076
Tssr98098 10 75131684 to 75131705 21 - TSS region transcription start site region 98098
Tssr98099 10 75131727 to 75131752 25 - TSS region transcription start site region 98099
Tssr98100 10 75150097 to 75150103 6 - TSS region transcription start site region 98100
Tssr98101 10 75152862 to 75152868 6 - TSS region transcription start site region 98101
Tssr94077 10 75173790 to 75173798 8 + TSS region transcription start site region 94077
Tssr94078 10 75173844 to 75173852 8 + TSS region transcription start site region 94078
Tssr94079 10 75173966 to 75173980 14 + TSS region transcription start site region 94079
Tssr98102 10 75185174 to 75185184 10 - TSS region transcription start site region 98102
Tssr98103 10 75185187 to 75185203 16 - TSS region transcription start site region 98103
Tssr94080 10 75194724 to 75194737 13 + TSS region transcription start site region 94080
Cpgi1718 10 75211742 to 75212704 962 CpG island CpG island 1718
Specc1l 10 75212037 to 75312400 100363 + protein coding gene sperm antigen with calponin homology and coiled-coil domains 1-like
Tssr94081 10 75212047 to 75212058 11 + TSS region transcription start site region 94081
Tssr94082 10 75212065 to 75212150 85 + TSS region transcription start site region 94082
Tssr94083 10 75212158 to 75212187 29 + TSS region transcription start site region 94083
Tssr94084 10 75222125 to 75222158 33 + TSS region transcription start site region 94084
Tssr94085 10 75223534 to 75223569 35 + TSS region transcription start site region 94085
D10Mit116 10 75224520 to 75224666 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 116
Tssr94086 10 75241155 to 75241176 21 + TSS region transcription start site region 94086
D10Mit91 10 75250410 to 75250558 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 91
Tssr98104 10 75273202 to 75273211 9 - TSS region transcription start site region 98104
Tssr94087 10 75273350 to 75273370 20 + TSS region transcription start site region 94087
Tssr94088 10 75278310 to 75278315 5 + TSS region transcription start site region 94088
Gm46234 10 75282777 to 75283035 258 - pseudogene predicted gene, 46234
D10Mit225 10 75300146 to 75300266 120 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 225
Tssr98105 10 75301996 to 75302005 9 - TSS region transcription start site region 98105
Tssr98106 10 75303334 to 75303374 40 - TSS region transcription start site region 98106
Tssr94089 10 75303617 to 75303624 7 + TSS region transcription start site region 94089
Cpgi1719 10 75316665 to 75317937 1272 CpG island CpG island 1719
Tssr94090 10 75316725 to 75316736 11 + TSS region transcription start site region 94090
Tssr94091 10 75316871 to 75316882 11 + TSS region transcription start site region 94091
Adora2a 10 75316877 to 75334784 17907 + protein coding gene adenosine A2a receptor
Tssr94092 10 75316895 to 75316904 9 + TSS region transcription start site region 94092
Tssr94093 10 75316917 to 75316955 38 + TSS region transcription start site region 94093
Tssr94094 10 75316964 to 75316988 24 + TSS region transcription start site region 94094
Tssr94095 10 75317054 to 75317073 19 + TSS region transcription start site region 94095
Tssr94096 10 75317076 to 75317124 48 + TSS region transcription start site region 94096
Tssr98107 10 75317563 to 75317574 11 - TSS region transcription start site region 98107
Tssr94097 10 75324929 to 75324937 8 + TSS region transcription start site region 94097
Tssr94098 10 75324941 to 75324963 22 + TSS region transcription start site region 94098
Tssr94099 10 75324968 to 75324979 11 + TSS region transcription start site region 94099
Tssr94100 10 75324982 to 75324989 7 + TSS region transcription start site region 94100
Cpgi1720 10 75326119 to 75326318 199 CpG island CpG island 1720
Cpgi1721 10 75333312 to 75333685 373 CpG island CpG island 1721
Tssr3246 10 75351979 to 75351986 7 + TSS region transcription start site region 3246
Gm5779 10 75352055 to 75352961 906 + pseudogene predicted gene 5779
Gm40694 10 75400745 to 75402251 1506 + lncRNA gene predicted gene, 40694
Upb1 10 75406911 to 75441679 34768 + protein coding gene ureidopropionase, beta
Tssr3247 10 75406933 to 75406936 3 + TSS region transcription start site region 3247
Tssr94101 10 75406941 to 75406954 13 + TSS region transcription start site region 94101
Tssr94102 10 75406967 to 75406974 7 + TSS region transcription start site region 94102
Tssr94103 10 75407005 to 75407022 17 + TSS region transcription start site region 94103
Tssr94104 10 75410019 to 75410054 35 + TSS region transcription start site region 94104
Tssr94105 10 75430047 to 75430057 10 + TSS region transcription start site region 94105
Tssr98108 10 75434447 to 75434471 24 - TSS region transcription start site region 98108
Gm25545 10 75442620 to 75442942 322 + unclassified non-coding RNA gene predicted gene, 25545
Cpgi1722 10 75444247 to 75444460 213 CpG island CpG island 1722
4933407G14Rik 10 75449510 to 75463104 13594 + lncRNA gene RIKEN cDNA 4933407G14 gene
Gm48158 10 75483090 to 75483392 302 - pseudogene predicted gene, 48158
Gm48148 10 75496061 to 75496159 98 + pseudogene predicted gene, 48148
Gucd1 10 75506814 to 75517967 11153 - protein coding gene guanylyl cyclase domain containing 1
Cpgi1723 10 75516896 to 75518487 1591 CpG island CpG island 1723
Tssr98109 10 75517248 to 75517265 17 - TSS region transcription start site region 98109
Tssr98110 10 75517273 to 75517309 36 - TSS region transcription start site region 98110
Tssr98111 10 75517324 to 75517362 38 - TSS region transcription start site region 98111
Tssr94106 10 75517545 to 75517557 12 + TSS region transcription start site region 94106
Tssr98112 10 75517869 to 75517887 18 - TSS region transcription start site region 98112
Tssr3248 10 75517958 to 75517977 19 - TSS region transcription start site region 3248
Tssr94107 10 75518011 to 75518029 18 + TSS region transcription start site region 94107
Tssr94108 10 75518030 to 75518041 11 + TSS region transcription start site region 94108
Snrpd3 10 75518042 to 75535440 17398 + protein coding gene small nuclear ribonucleoprotein D3
Tssr94109 10 75518042 to 75518046 4 + TSS region transcription start site region 94109
Gm35061 10 75526285 to 75526942 657 - pseudogene predicted gene, 35061
D10Mit287b 10 75528061 to 75528207 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 287b
D10Mit287a 10 75528061 to 75528159 98 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 287a
Tssr94110 10 75532008 to 75532026 18 + TSS region transcription start site region 94110
Lrrc75b 10 75550123 to 75560330 10207 - protein coding gene leucine rich repeat containing 75B
Cpgi1724 10 75559299 to 75560755 1456 CpG island CpG island 1724
Tssr98113 10 75560081 to 75560099 18 - TSS region transcription start site region 98113
Tssr98114 10 75560108 to 75560124 16 - TSS region transcription start site region 98114
Tssr94111 10 75561269 to 75561279 10 + TSS region transcription start site region 94111
D10Jhu72 10 75562822 to 75563049 227 DNA segment DNA segment, Chr 10, Johns Hopkins University 72
Tssr94112 10 75564086 to 75564165 79 + TSS region transcription start site region 94112
Ggt1 10 75564114 to 75586192 22078 + protein coding gene gamma-glutamyltransferase 1
Tssr94113 10 75564168 to 75564179 11 + TSS region transcription start site region 94113
Tssr94114 10 75564181 to 75564197 16 + TSS region transcription start site region 94114
Tssr94115 10 75564198 to 75564217 19 + TSS region transcription start site region 94115
Tssr94116 10 75564584 to 75564601 17 + TSS region transcription start site region 94116
Tssr94117 10 75566172 to 75566187 15 + TSS region transcription start site region 94117
Tssr94118 10 75566219 to 75566241 22 + TSS region transcription start site region 94118
Tssr94119 10 75566257 to 75566302 45 + TSS region transcription start site region 94119
Tssr94120 10 75568630 to 75568639 9 + TSS region transcription start site region 94120
Tssr94121 10 75568641 to 75568645 4 + TSS region transcription start site region 94121
Tssr94122 10 75568648 to 75568673 25 + TSS region transcription start site region 94122
Tssr94123 10 75571503 to 75571512 9 + TSS region transcription start site region 94123
Tssr94124 10 75571522 to 75571532 10 + TSS region transcription start site region 94124
Tssr94125 10 75571542 to 75571551 9 + TSS region transcription start site region 94125
Tssr94126 10 75571553 to 75571586 33 + TSS region transcription start site region 94126
Tssr94127 10 75573450 to 75573464 14 + TSS region transcription start site region 94127
Tssr94128 10 75573492 to 75573501 9 + TSS region transcription start site region 94128
Tssr94129 10 75573509 to 75573528 19 + TSS region transcription start site region 94129
Tssr94130 10 75574200 to 75574225 25 + TSS region transcription start site region 94130
Ggt5 10 75589324 to 75616968 27644 + protein coding gene gamma-glutamyltransferase 5
Tssr94131 10 75589338 to 75589343 5 + TSS region transcription start site region 94131
Tssr94132 10 75589352 to 75589355 3 + TSS region transcription start site region 94132
Tssr94133 10 75589363 to 75589390 27 + TSS region transcription start site region 94133
Tssr94134 10 75589423 to 75589437 14 + TSS region transcription start site region 94134
Tssr94135 10 75589461 to 75589483 22 + TSS region transcription start site region 94135
Cpgi1725 10 75589656 to 75590042 386 CpG island CpG island 1725
Gm9985 10 75590142 to 75590653 511 - pseudogene predicted gene 9985
Cpgi1726 10 75603815 to 75603997 182 CpG island CpG island 1726
Gm26402 10 75613157 to 75613269 112 - snRNA gene predicted gene, 26402
Gm19688 10 75619080 to 75619503 423 - pseudogene predicted gene, 19688
Gm40695 10 75632351 to 75636405 4054 - lncRNA gene predicted gene, 40695
D10Jhu71e 10 75635968 to 75636200 232 DNA segment DNA segment, Chr 10, Johns Hopkins University 71 expressed
Susd2 10 75636706 to 75644008 7302 - protein coding gene sushi domain containing 2
Tssr98115 10 75643971 to 75643986 15 - TSS region transcription start site region 98115
Tssr3249 10 75643994 to 75643995 1 - TSS region transcription start site region 3249
Cabin1 10 75646112 to 75764341 118229 - protein coding gene calcineurin binding protein 1
Cpgi1727 10 75667070 to 75668335 1265 CpG island CpG island 1727
Tssr98116 10 75667579 to 75667616 37 - TSS region transcription start site region 98116
Tssr98117 10 75668032 to 75668046 14 - TSS region transcription start site region 98117
Tssr98118 10 75668049 to 75668101 52 - TSS region transcription start site region 98118
D10Mit186 10 75681135 to 75681262 127 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 186
Bsc1 10 75681135 to 75681262 127 QTL brain size control 1
Gm40696 10 75695055 to 75709263 14208 + lncRNA gene predicted gene, 40696
D10Jhu70 10 75743211 to 75743506 295 DNA segment DNA segment, Chr 10, Johns Hopkins University 70
Cpgi1728 10 75763796 to 75764717 921 CpG island CpG island 1728
Tssr98119 10 75764182 to 75764238 56 - TSS region transcription start site region 98119
Tssr98120 10 75764265 to 75764359 94 - TSS region transcription start site region 98120
Tssr94136 10 75764443 to 75764477 34 + TSS region transcription start site region 94136
Gm19326 10 75767161 to 75767486 325 + pseudogene predicted gene, 19326
Ddt 10 75771233 to 75773374 2141 - protein coding gene D-dopachrome tautomerase
Gm20441 10 75771451 to 75780954 9503 - protein coding gene predicted gene 20441
Cpgi1729 10 75772706 to 75773379 673 CpG island CpG island 1729
Tssr98121 10 75773350 to 75773434 84 - TSS region transcription start site region 98121
Gstt3 10 75774122 to 75781414 7292 - protein coding gene glutathione S-transferase, theta 3
D10Jhu69 10 75779313 to 75779466 153 DNA segment DNA segment, Chr 10, Johns Hopkins University 69
D10Mit158 10 75780308 to 75780408 100 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 158
Cpgi1730 10 75780796 to 75781238 442 CpG island CpG island 1730
Tssr98122 10 75781036 to 75781110 74 - TSS region transcription start site region 98122
Tssr98123 10 75781392 to 75781410 18 - TSS region transcription start site region 98123
Tssr98124 10 75781411 to 75781434 23 - TSS region transcription start site region 98124
Gstt1 10 75783813 to 75798584 14771 - protein coding gene glutathione S-transferase, theta 1