Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:7178553-7768598

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnksr3 10 7119063 to 7212237 93174 - protein coding gene Cnksr family member 3
Cpgi1254 10 7207268 to 7207432 164 CpG island CpG island 1254
Cpgi1253 10 7210904 to 7212557 1653 CpG island CpG island 1253
Tssr96590 10 7212197 to 7212220 23 - TSS region transcription start site region 96590
Tssr96591 10 7212222 to 7212247 25 - TSS region transcription start site region 96591
Tssr92296 10 7212293 to 7212331 38 + TSS region transcription start site region 92296
Gm46208 10 7212300 to 7215108 2808 + lncRNA gene predicted gene, 46208
Tssr92297 10 7212334 to 7212362 28 + TSS region transcription start site region 92297
Tssr92298 10 7212380 to 7212390 10 + TSS region transcription start site region 92298
Tssr96592 10 7212634 to 7212672 38 - TSS region transcription start site region 96592
Tssr3128 10 7325696 to 7325699 3 + TSS region transcription start site region 3128
Gm21321 10 7390133 to 7392184 2051 - pseudogene predicted gene, 21321
Ulbp1 10 7444873 to 7473640 28767 - protein coding gene UL16 binding protein 1
Tssr3129 10 7458313 to 7458318 5 + TSS region transcription start site region 3129
Gm46209 10 7458356 to 7458908 552 + pseudogene predicted gene, 46209
Tssr3130 10 7473351 to 7473368 17 - TSS region transcription start site region 3130
Tssr3131 10 7473553 to 7473598 45 - TSS region transcription start site region 3131
Tssr3132 10 7473606 to 7473634 28 - TSS region transcription start site region 3132
Gm46196 10 7477962 to 7481919 3957 - pseudogene predicted gene, 46196
Gm40597 10 7491291 to 7584584 93293 - lncRNA gene predicted gene, 40597
Gm48121 10 7577103 to 7577373 270 + pseudogene predicted gene, 48121
Cpgi1272 10 7589398 to 7590876 1478 CpG island CpG island 1272
Tssr92299 10 7589788 to 7589876 88 + TSS region transcription start site region 92299
Lrp11 10 7589800 to 7625483 35683 + protein coding gene low density lipoprotein receptor-related protein 11
Tssr92300 10 7589885 to 7589902 17 + TSS region transcription start site region 92300
Tssr92301 10 7590074 to 7590124 50 + TSS region transcription start site region 92301
Gm16254 10 7606084 to 7606813 729 - pseudogene predicted gene 16254
Tssr92302 10 7629321 to 7629335 14 + TSS region transcription start site region 92302
Pcmt1 10 7629373 to 7681136 51763 - protein coding gene protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
Tssr92303 10 7654463 to 7654465 2 + TSS region transcription start site region 92303
Tssr96593 10 7661982 to 7661991 9 - TSS region transcription start site region 96593
Cpgi1273 10 7662632 to 7663800 1168 CpG island CpG island 1273
Tssr92304 10 7662795 to 7662800 5 + TSS region transcription start site region 92304
Tssr96594 10 7663245 to 7663309 64 - TSS region transcription start site region 96594
Tssr92305 10 7663368 to 7663395 27 + TSS region transcription start site region 92305
A630066F11Rik 10 7663371 to 7664623 1252 + lncRNA gene RIKEN cDNA A630066F11 gene
Tssr92306 10 7663399 to 7663417 18 + TSS region transcription start site region 92306
Tssr96595 10 7663553 to 7663565 12 - TSS region transcription start site region 96595
Tssr96596 10 7663569 to 7663613 44 - TSS region transcription start site region 96596
Tssr96597 10 7663696 to 7663721 25 - TSS region transcription start site region 96597
Tssr96598 10 7664075 to 7664085 10 - TSS region transcription start site region 96598
Tssr96599 10 7664087 to 7664095 8 - TSS region transcription start site region 96599
Tssr96600 10 7664119 to 7664128 9 - TSS region transcription start site region 96600
Tssr96601 10 7664139 to 7664149 10 - TSS region transcription start site region 96601
Cpgi1274 10 7667394 to 7667858 464 CpG island CpG island 1274
Nup43 10 7667503 to 7678881 11378 + protein coding gene nucleoporin 43
Tssr92307 10 7667506 to 7667558 52 + TSS region transcription start site region 92307
BC020402 10 7678971 to 7681158 2187 - lncRNA gene cDNA sequence BC020402
Cpgi1275 10 7680531 to 7681939 1408 CpG island CpG island 1275
Tssr92308 10 7680918 to 7681025 107 + TSS region transcription start site region 92308
Tssr96602 10 7681118 to 7681163 45 - TSS region transcription start site region 96602
Tssr92309 10 7681185 to 7681196 11 + TSS region transcription start site region 92309
Tssr92310 10 7681197 to 7681225 28 + TSS region transcription start site region 92310
Lats1 10 7681214 to 7716460 35246 + protein coding gene large tumor suppressor
Tssr92311 10 7709032 to 7709070 38 + TSS region transcription start site region 92311
Cpgi1276 10 7725810 to 7726414 604 CpG island CpG island 1276
Tssr92312 10 7725997 to 7726014 17 + TSS region transcription start site region 92312
Katna1 10 7726000 to 7763150 37150 + protein coding gene katanin p60 (ATPase-containing) subunit A1
Tssr92313 10 7726061 to 7726083 22 + TSS region transcription start site region 92313
Tssr92314 10 7726681 to 7726694 13 + TSS region transcription start site region 92314
Gm20470 10 7743520 to 7761099 17579 - unclassified non-coding RNA gene predicted gene 20470
Tssr92315 10 7753563 to 7753575 12 + TSS region transcription start site region 92315
Tssr92316 10 7758694 to 7758701 7 + TSS region transcription start site region 92316
Ginm1 10 7767947 to 7780948 13001 - protein coding gene glycoprotein integral membrane 1
Tssr96603 10 7768539 to 7768559 20 - TSS region transcription start site region 96603