Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:7113356-7803908

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnksr3 10 7119063 to 7212237 93174 - protein coding gene Cnksr family member 3
Tssr3127 10 7131957 to 7131959 2 + TSS region transcription start site region 3127
Tssr96588 10 7140378 to 7140393 15 - TSS region transcription start site region 96588
Tssr96589 10 7140395 to 7140408 13 - TSS region transcription start site region 96589
Cpgi1254 10 7207268 to 7207432 164 CpG island CpG island 1254
Cpgi1253 10 7210904 to 7212557 1653 CpG island CpG island 1253
Tssr96590 10 7212197 to 7212220 23 - TSS region transcription start site region 96590
Tssr96591 10 7212222 to 7212247 25 - TSS region transcription start site region 96591
Tssr92296 10 7212293 to 7212331 38 + TSS region transcription start site region 92296
Gm46208 10 7212300 to 7215108 2808 + lncRNA gene predicted gene, 46208
Tssr92297 10 7212334 to 7212362 28 + TSS region transcription start site region 92297
Tssr92298 10 7212380 to 7212390 10 + TSS region transcription start site region 92298
Tssr96592 10 7212634 to 7212672 38 - TSS region transcription start site region 96592
Tssr3128 10 7325696 to 7325699 3 + TSS region transcription start site region 3128
Gm21321 10 7390133 to 7392184 2051 - pseudogene predicted gene, 21321
Ulbp1 10 7444873 to 7473640 28767 - protein coding gene UL16 binding protein 1
Tssr3129 10 7458313 to 7458318 5 + TSS region transcription start site region 3129
Gm46209 10 7458356 to 7458908 552 + pseudogene predicted gene, 46209
Tssr3130 10 7473351 to 7473368 17 - TSS region transcription start site region 3130
Tssr3131 10 7473553 to 7473598 45 - TSS region transcription start site region 3131
Tssr3132 10 7473606 to 7473634 28 - TSS region transcription start site region 3132
Gm46196 10 7477962 to 7481919 3957 - pseudogene predicted gene, 46196
Gm40597 10 7491291 to 7584584 93293 - lncRNA gene predicted gene, 40597
Gm48121 10 7577103 to 7577373 270 + pseudogene predicted gene, 48121
Cpgi1272 10 7589398 to 7590876 1478 CpG island CpG island 1272
Tssr92299 10 7589788 to 7589876 88 + TSS region transcription start site region 92299
Lrp11 10 7589800 to 7625483 35683 + protein coding gene low density lipoprotein receptor-related protein 11
Tssr92300 10 7589885 to 7589902 17 + TSS region transcription start site region 92300
Tssr92301 10 7590074 to 7590124 50 + TSS region transcription start site region 92301
Gm16254 10 7606084 to 7606813 729 - pseudogene predicted gene 16254
Tssr92302 10 7629321 to 7629335 14 + TSS region transcription start site region 92302
Pcmt1 10 7629373 to 7681136 51763 - protein coding gene protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
Tssr92303 10 7654463 to 7654465 2 + TSS region transcription start site region 92303
Tssr96593 10 7661982 to 7661991 9 - TSS region transcription start site region 96593
Cpgi1273 10 7662632 to 7663800 1168 CpG island CpG island 1273
Tssr92304 10 7662795 to 7662800 5 + TSS region transcription start site region 92304
Tssr96594 10 7663245 to 7663309 64 - TSS region transcription start site region 96594
Tssr92305 10 7663368 to 7663395 27 + TSS region transcription start site region 92305
A630066F11Rik 10 7663371 to 7664623 1252 + lncRNA gene RIKEN cDNA A630066F11 gene
Tssr92306 10 7663399 to 7663417 18 + TSS region transcription start site region 92306
Tssr96595 10 7663553 to 7663565 12 - TSS region transcription start site region 96595
Tssr96596 10 7663569 to 7663613 44 - TSS region transcription start site region 96596
Tssr96597 10 7663696 to 7663721 25 - TSS region transcription start site region 96597
Tssr96598 10 7664075 to 7664085 10 - TSS region transcription start site region 96598
Tssr96599 10 7664087 to 7664095 8 - TSS region transcription start site region 96599
Tssr96600 10 7664119 to 7664128 9 - TSS region transcription start site region 96600
Tssr96601 10 7664139 to 7664149 10 - TSS region transcription start site region 96601
Cpgi1274 10 7667394 to 7667858 464 CpG island CpG island 1274
Nup43 10 7667503 to 7678881 11378 + protein coding gene nucleoporin 43
Tssr92307 10 7667506 to 7667558 52 + TSS region transcription start site region 92307
BC020402 10 7678971 to 7681158 2187 - lncRNA gene cDNA sequence BC020402
Cpgi1275 10 7680531 to 7681939 1408 CpG island CpG island 1275
Tssr92308 10 7680918 to 7681025 107 + TSS region transcription start site region 92308
Tssr96602 10 7681118 to 7681163 45 - TSS region transcription start site region 96602
Tssr92309 10 7681185 to 7681196 11 + TSS region transcription start site region 92309
Tssr92310 10 7681197 to 7681225 28 + TSS region transcription start site region 92310
Lats1 10 7681214 to 7716460 35246 + protein coding gene large tumor suppressor
Tssr92311 10 7709032 to 7709070 38 + TSS region transcription start site region 92311
Cpgi1276 10 7725810 to 7726414 604 CpG island CpG island 1276
Tssr92312 10 7725997 to 7726014 17 + TSS region transcription start site region 92312
Katna1 10 7726000 to 7763150 37150 + protein coding gene katanin p60 (ATPase-containing) subunit A1
Tssr92313 10 7726061 to 7726083 22 + TSS region transcription start site region 92313
Tssr92314 10 7726681 to 7726694 13 + TSS region transcription start site region 92314
Gm20470 10 7743520 to 7761099 17579 - unclassified non-coding RNA gene predicted gene 20470
Tssr92315 10 7753563 to 7753575 12 + TSS region transcription start site region 92315
Tssr92316 10 7758694 to 7758701 7 + TSS region transcription start site region 92316
Ginm1 10 7767947 to 7780948 13001 - protein coding gene glycoprotein integral membrane 1
Tssr96603 10 7768539 to 7768559 20 - TSS region transcription start site region 96603
B430219N15Rik 10 7780185 to 7781357 1172 + antisense lncRNA gene RIKEN cDNA B430219N15 gene
Cpgi1277 10 7780238 to 7781069 831 CpG island CpG island 1277
Tssr92317 10 7780265 to 7780277 12 + TSS region transcription start site region 92317
Tssr96604 10 7780866 to 7780923 57 - TSS region transcription start site region 96604
6530403G13Rik 10 7791404 to 7792831 1427 - lncRNA gene RIKEN cDNA 6530403G13 gene
Cpgi1278 10 7792519 to 7793449 930 CpG island CpG island 1278
Tssr96605 10 7792795 to 7792833 38 - TSS region transcription start site region 96605
Ppil4 10 7792883 to 7822565 29682 + protein coding gene peptidylprolyl isomerase (cyclophilin)-like 4
Tssr92318 10 7792897 to 7792936 39 + TSS region transcription start site region 92318
Tssr92319 10 7802974 to 7802978 4 + TSS region transcription start site region 92319