Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:70586540-71676561

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phyhipl 10 70557686 to 70599291 41605 - protein coding gene phytanoyl-CoA hydroxylase interacting protein-like
Tssr3242 10 70592771 to 70592776 5 - TSS region transcription start site region 3242
Tssr98044 10 70592782 to 70592848 66 - TSS region transcription start site region 98044
Tssr98045 10 70592860 to 70592865 5 - TSS region transcription start site region 98045
Cpgi1700 10 70598471 to 70600384 1913 CpG island CpG island 1700
Tssr98046 10 70599271 to 70599282 11 - TSS region transcription start site region 98046
Tssr98047 10 70599284 to 70599301 17 - TSS region transcription start site region 98047
Tssr3243 10 70599309 to 70599312 3 - TSS region transcription start site region 3243
Tssr98048 10 70599314 to 70599323 9 - TSS region transcription start site region 98048
Gm46232 10 70599778 to 70680214 80436 + lncRNA gene predicted gene, 46232
Tssr94023 10 70599814 to 70599836 22 + TSS region transcription start site region 94023
BB187676 10 70599825 to 70600477 652 unclassified gene expressed sequence BB187676
D630013N20Rik 10 70601049 to 70655963 54914 - lncRNA gene RIKEN cDNA D630013N20 gene
Tssr98049 10 70606036 to 70606042 6 - TSS region transcription start site region 98049
Gm40688 10 70626728 to 70635263 8535 + lncRNA gene predicted gene, 40688
Tssr98050 10 70644695 to 70644707 12 - TSS region transcription start site region 98050
Tssr98051 10 70644875 to 70644888 13 - TSS region transcription start site region 98051
Tssr98052 10 70644897 to 70644907 10 - TSS region transcription start site region 98052
Tssr98053 10 70655934 to 70655972 38 - TSS region transcription start site region 98053
Gm33979 10 70714928 to 70738844 23916 - lincRNA gene predicted gene, 33979
Gm48021 10 70807242 to 70813822 6580 + lincRNA gene predicted gene, 48021
Gm48022 10 70813845 to 70816052 2207 + lincRNA gene predicted gene, 48022
Cpgi1701 10 70830753 to 70831032 279 CpG island CpG island 1701
Gm40689 10 70830755 to 70837863 7108 + lincRNA gene predicted gene, 40689
Tssr94024 10 70837679 to 70837683 4 + TSS region transcription start site region 94024
Gm48023 10 70847017 to 70853726 6709 + lincRNA gene predicted gene, 48023
Gm48024 10 70863399 to 70868452 5053 - lincRNA gene predicted gene, 48024
4930533K18Rik 10 70868621 to 70910761 42140 + antisense lncRNA gene RIKEN cDNA 4930533K18 gene
Tssr94025 10 70868633 to 70868652 19 + TSS region transcription start site region 94025
Gm48036 10 70869997 to 70872420 2423 - lincRNA gene predicted gene, 48036
Gm24486 10 70882104 to 70882210 106 + snRNA gene predicted gene, 24486
Bicc1 10 70922837 to 71159690 236853 - protein coding gene BicC family RNA binding protein 1
Tssr98054 10 70923786 to 70923805 19 - TSS region transcription start site region 98054
Gm48025 10 70975506 to 70993040 17534 - sense intronic lncRNA gene predicted gene, 48025
Tssr98055 10 71058520 to 71058524 4 - TSS region transcription start site region 98055
Tssr98056 10 71069837 to 71069839 2 - TSS region transcription start site region 98056
Gm15647 10 71082876 to 71083651 775 + antisense lncRNA gene predicted gene 15647
Tssr98057 10 71115156 to 71115160 4 - TSS region transcription start site region 98057
Gm34137 10 71125656 to 71141572 15916 + lncRNA gene predicted gene, 34137
Tssr94026 10 71131540 to 71131561 21 + TSS region transcription start site region 94026
Tssr98058 10 71143529 to 71143554 25 - TSS region transcription start site region 98058
Tssr98059 10 71143626 to 71143630 4 - TSS region transcription start site region 98059
Gm32025 10 71148160 to 71148466 306 + pseudogene predicted gene, 32025
Tssr98060 10 71156440 to 71156443 3 - TSS region transcription start site region 98060
Cpgi1702 10 71158961 to 71160173 1212 CpG island CpG island 1702
Tssr98061 10 71158971 to 71158972 1 - TSS region transcription start site region 98061
Tssr98062 10 71159574 to 71159581 7 - TSS region transcription start site region 98062
Tssr98063 10 71159657 to 71159671 14 - TSS region transcription start site region 98063
Tssr98064 10 71159676 to 71159708 32 - TSS region transcription start site region 98064
Tssr98065 10 71159716 to 71159734 18 - TSS region transcription start site region 98065
Tssr98066 10 71159809 to 71159829 20 - TSS region transcription start site region 98066
Tssr98067 10 71159830 to 71159868 38 - TSS region transcription start site region 98067
Gm6331 10 71162928 to 71163377 449 + pseudogene predicted gene 6331
C730027H18Rik 10 71168737 to 71182040 13303 - lincRNA gene RIKEN cDNA C730027H18 gene
Gm34328 10 71181166 to 71201144 19978 + lncRNA gene predicted gene, 34328
Tssr94027 10 71181355 to 71181398 43 + TSS region transcription start site region 94027
Tssr98068 10 71182017 to 71182058 41 - TSS region transcription start site region 98068
1700113B09Rik 10 71201745 to 71204488 2743 + lincRNA gene RIKEN cDNA 1700113B09 gene
Cpgi1703 10 71217834 to 71218005 171 CpG island CpG island 1703
Tfam 10 71225464 to 71238280 12816 - protein coding gene transcription factor A, mitochondrial
Tssr98069 10 71235317 to 71235339 22 - TSS region transcription start site region 98069
Cpgi1704 10 71237488 to 71238486 998 CpG island CpG island 1704
Tssr98070 10 71238007 to 71238024 17 - TSS region transcription start site region 98070
Tssr98071 10 71238035 to 71238084 49 - TSS region transcription start site region 98071
Tssr98072 10 71238274 to 71238288 14 - TSS region transcription start site region 98072
Cpgi1705 10 71250637 to 71250860 223 CpG island CpG island 1705
Ube2d1 10 71254980 to 71285262 30282 - protein coding gene ubiquitin-conjugating enzyme E2D 1
Cpgi1706 10 71284590 to 71285847 1257 CpG island CpG island 1706
Tssr98073 10 71285189 to 71285200 11 - TSS region transcription start site region 98073
Tssr98074 10 71285206 to 71285229 23 - TSS region transcription start site region 98074
Tssr98075 10 71285234 to 71285245 11 - TSS region transcription start site region 98075
Tssr98076 10 71285253 to 71285264 11 - TSS region transcription start site region 98076
Tssr98077 10 71285268 to 71285279 11 - TSS region transcription start site region 98077
Tssr98078 10 71285427 to 71285445 18 - TSS region transcription start site region 98078
Gm34376 10 71287735 to 71292240 4505 + lincRNA gene predicted gene, 34376
Cpgi1707 10 71300237 to 71300406 169 CpG island CpG island 1707
Gm20609 10 71310745 to 71313977 3232 + lincRNA gene predicted gene 20609
Rpl19-ps2 10 71318766 to 71319355 589 + pseudogene ribosomal protein L19, pseudogene 2
Cisd1 10 71330494 to 71344849 14355 - protein coding gene CDGSH iron sulfur domain 1
4932439E07Rik 10 71336701 to 71339622 2921 unclassified gene RIKEN cDNA 4932439E07 gene
Tssr98079 10 71343207 to 71343215 8 - TSS region transcription start site region 98079
Cpgi1708 10 71344391 to 71345423 1032 CpG island CpG island 1708
Tssr98080 10 71344785 to 71344790 5 - TSS region transcription start site region 98080
Tssr98081 10 71344795 to 71344881 86 - TSS region transcription start site region 98081
Tssr98082 10 71344882 to 71344893 11 - TSS region transcription start site region 98082
Tssr98083 10 71344916 to 71344927 11 - TSS region transcription start site region 98083
Tssr98084 10 71344933 to 71344948 15 - TSS region transcription start site region 98084
Cpgi1709 10 71347374 to 71348709 1335 CpG island CpG island 1709
Tssr94028 10 71347736 to 71347763 27 + TSS region transcription start site region 94028
Ipmk 10 71347766 to 71385885 38119 + protein coding gene inositol polyphosphate multikinase
Tssr94029 10 71347778 to 71347813 35 + TSS region transcription start site region 94029
Tssr94030 10 71347829 to 71347843 14 + TSS region transcription start site region 94030
Cpgi1710 10 71381420 to 71381831 411 CpG island CpG island 1710
Tssr94031 10 71388501 to 71388505 4 + TSS region transcription start site region 94031
4930551I15Rik 10 71476405 to 71485520 9115 - lincRNA gene RIKEN cDNA 4930551I15 gene
Tssr94032 10 71478605 to 71478608 3 + TSS region transcription start site region 94032
Tssr94033 10 71482984 to 71483009 25 + TSS region transcription start site region 94033
Gm46233 10 71483081 to 71483529 448 + pseudogene predicted gene, 46233
Gm47028 10 71520443 to 71522298 1855 - lincRNA gene predicted gene, 47028
Gm34486 10 71527266 to 71565366 38100 + lncRNA gene predicted gene, 34486
Tssr94034 10 71527293 to 71527325 32 + TSS region transcription start site region 94034
Gm4797 10 71595850 to 71597129 1279 - pseudogene predicted gene 4797
Gm19074 10 71611647 to 71613075 1428 - pseudogene predicted gene, 19074
Tssr3244 10 71662721 to 71662724 3 + TSS region transcription start site region 3244
Gm34544 10 71664608 to 71668578 3970 + lincRNA gene predicted gene, 34544