Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:70279897-71009907

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc16a9 10 70245276 to 70285951 40675 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 9
Gm7097 10 70284235 to 70284953 718 - antisense lncRNA gene predicted gene 7097
Tssr94012 10 70285506 to 70285511 5 + TSS region transcription start site region 94012
Gm9877 10 70285549 to 70288176 2627 - pseudogene predicted gene 9877
Tssr98037 10 70288147 to 70288150 3 - TSS region transcription start site region 98037
Tssr98038 10 70288156 to 70288166 10 - TSS region transcription start site region 98038
Tssr98039 10 70288528 to 70288548 20 - TSS region transcription start site region 98039
Gm40687 10 70289772 to 70308449 18677 + lncRNA gene predicted gene, 40687
Gm33704 10 70293395 to 70294057 662 + lncRNA gene predicted gene, 33704
Tssr94013 10 70293522 to 70293531 9 + TSS region transcription start site region 94013
Gm20108 10 70338302 to 70338454 152 + pseudogene predicted gene, 20108
Tssr94014 10 70359717 to 70359764 47 + TSS region transcription start site region 94014
Tssr98040 10 70364697 to 70364709 12 - TSS region transcription start site region 98040
Tssr94015 10 70364842 to 70364872 30 + TSS region transcription start site region 94015
Tssr94016 10 70365359 to 70365391 32 + TSS region transcription start site region 94016
Tssr94017 10 70365775 to 70365825 50 + TSS region transcription start site region 94017
Tssr98041 10 70367851 to 70367862 11 - TSS region transcription start site region 98041
Tssr94018 10 70378696 to 70378710 14 + TSS region transcription start site region 94018
Gm47946 10 70412460 to 70415581 3121 - lincRNA gene predicted gene, 47946
Cpgi1698 10 70440233 to 70441072 839 CpG island CpG island 1698
Fam13c 10 70440481 to 70558736 118255 + protein coding gene family with sequence similarity 13, member C
Tssr94019 10 70440643 to 70440672 29 + TSS region transcription start site region 94019
Tssr94020 10 70440676 to 70440720 44 + TSS region transcription start site region 94020
Tssr94021 10 70440844 to 70440937 93 + TSS region transcription start site region 94021
Gm22320 10 70501192 to 70501503 311 - unclassified non-coding RNA gene predicted gene, 22320
Gm29783 10 70504880 to 70505248 368 - pseudogene predicted gene, 29783
Cpgi1699 10 70520422 to 70521000 578 CpG island CpG island 1699
Tssr94022 10 70520478 to 70520489 11 + TSS region transcription start site region 94022
Phyhipl 10 70557686 to 70599291 41605 - protein coding gene phytanoyl-CoA hydroxylase interacting protein-like
Tssr98042 10 70559221 to 70559256 35 - TSS region transcription start site region 98042
Tssr98043 10 70559413 to 70559430 17 - TSS region transcription start site region 98043
Tssr3242 10 70592771 to 70592776 5 - TSS region transcription start site region 3242
Tssr98044 10 70592782 to 70592848 66 - TSS region transcription start site region 98044
Tssr98045 10 70592860 to 70592865 5 - TSS region transcription start site region 98045
Cpgi1700 10 70598471 to 70600384 1913 CpG island CpG island 1700
Tssr98046 10 70599271 to 70599282 11 - TSS region transcription start site region 98046
Tssr98047 10 70599284 to 70599301 17 - TSS region transcription start site region 98047
Tssr3243 10 70599309 to 70599312 3 - TSS region transcription start site region 3243
Tssr98048 10 70599314 to 70599323 9 - TSS region transcription start site region 98048
Gm46232 10 70599778 to 70680214 80436 + lncRNA gene predicted gene, 46232
Tssr94023 10 70599814 to 70599836 22 + TSS region transcription start site region 94023
BB187676 10 70599825 to 70600477 652 unclassified gene expressed sequence BB187676
D630013N20Rik 10 70601049 to 70655963 54914 - lncRNA gene RIKEN cDNA D630013N20 gene
Tssr98049 10 70606036 to 70606042 6 - TSS region transcription start site region 98049
Gm40688 10 70626728 to 70635263 8535 + lncRNA gene predicted gene, 40688
Tssr98050 10 70644695 to 70644707 12 - TSS region transcription start site region 98050
Tssr98051 10 70644875 to 70644888 13 - TSS region transcription start site region 98051
Tssr98052 10 70644897 to 70644907 10 - TSS region transcription start site region 98052
Tssr98053 10 70655934 to 70655972 38 - TSS region transcription start site region 98053
Gm33979 10 70714928 to 70738844 23916 - lincRNA gene predicted gene, 33979
Gm48021 10 70807242 to 70813822 6580 + lincRNA gene predicted gene, 48021
Gm48022 10 70813845 to 70816052 2207 + lincRNA gene predicted gene, 48022
Cpgi1701 10 70830753 to 70831032 279 CpG island CpG island 1701
Gm40689 10 70830755 to 70837863 7108 + lincRNA gene predicted gene, 40689
Tssr94024 10 70837679 to 70837683 4 + TSS region transcription start site region 94024
Gm48023 10 70847017 to 70853726 6709 + lincRNA gene predicted gene, 48023
Gm48024 10 70863399 to 70868452 5053 - lincRNA gene predicted gene, 48024
4930533K18Rik 10 70868621 to 70910761 42140 + antisense lncRNA gene RIKEN cDNA 4930533K18 gene
Tssr94025 10 70868633 to 70868652 19 + TSS region transcription start site region 94025
Gm48036 10 70869997 to 70872420 2423 - lincRNA gene predicted gene, 48036
Gm24486 10 70882104 to 70882210 106 + snRNA gene predicted gene, 24486
Bicc1 10 70922837 to 71159690 236853 - protein coding gene BicC family RNA binding protein 1
Tssr98054 10 70923786 to 70923805 19 - TSS region transcription start site region 98054
Gm48025 10 70975506 to 70993040 17534 - sense intronic lncRNA gene predicted gene, 48025