Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:69987771-71197776

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phl2 10 48098403 to 70276821 22178418 QTL progressive hearing loss 2
Ank3 10 69533580 to 70027436 493856 + protein coding gene ankyrin 3, epithelial
Tssr93977 10 69988472 to 69988476 4 + TSS region transcription start site region 93977
Tssr93978 10 69993102 to 69993117 15 + TSS region transcription start site region 93978
Tssr93979 10 69993289 to 69993300 11 + TSS region transcription start site region 93979
Tssr93980 10 69994389 to 69994412 23 + TSS region transcription start site region 93980
Cpgi1694 10 70004864 to 70005164 300 CpG island CpG island 1694
Tssr93981 10 70006227 to 70006231 4 + TSS region transcription start site region 93981
Tssr93982 10 70024952 to 70024956 4 + TSS region transcription start site region 93982
Tssr93983 10 70025687 to 70025700 13 + TSS region transcription start site region 93983
Tssr93984 10 70026290 to 70026295 5 + TSS region transcription start site region 93984
Cpgi1695 10 70059980 to 70060200 220 CpG island CpG island 1695
Tssr93985 10 70060150 to 70060162 12 + TSS region transcription start site region 93985
Tssr93986 10 70060187 to 70060194 7 + TSS region transcription start site region 93986
Tssr93987 10 70095351 to 70095353 2 + TSS region transcription start site region 93987
Cpgi1696 10 70096479 to 70098276 1797 CpG island CpG island 1696
Tssr98035 10 70096725 to 70096765 40 - TSS region transcription start site region 98035
Tssr93988 10 70096826 to 70096859 33 + TSS region transcription start site region 93988
Tssr93989 10 70096960 to 70096965 5 + TSS region transcription start site region 93989
Tssr93990 10 70097102 to 70097211 109 + TSS region transcription start site region 93990
Ccdc6 10 70097121 to 70193200 96079 + protein coding gene coiled-coil domain containing 6
Tssr93991 10 70097212 to 70097235 23 + TSS region transcription start site region 93991
Tssr3241 10 70097237 to 70097250 13 + TSS region transcription start site region 3241
Tssr93992 10 70097264 to 70097301 37 + TSS region transcription start site region 93992
Tssr93993 10 70110024 to 70110027 3 + TSS region transcription start site region 93993
Tssr93994 10 70110268 to 70110296 28 + TSS region transcription start site region 93994
Tssr93995 10 70110300 to 70110307 7 + TSS region transcription start site region 93995
Tssr93996 10 70111965 to 70111972 7 + TSS region transcription start site region 93996
Tssr93997 10 70169156 to 70169169 13 + TSS region transcription start site region 93997
Tssr93998 10 70175013 to 70175020 7 + TSS region transcription start site region 93998
Tssr93999 10 70182081 to 70182092 11 + TSS region transcription start site region 93999
Tssr94000 10 70189206 to 70189234 28 + TSS region transcription start site region 94000
Tssr94001 10 70190426 to 70190438 12 + TSS region transcription start site region 94001
Tssr94002 10 70191192 to 70191197 5 + TSS region transcription start site region 94002
Tssr94003 10 70194871 to 70194885 14 + TSS region transcription start site region 94003
Tssr98036 10 70195432 to 70195458 26 - TSS region transcription start site region 98036
Tssr94004 10 70204632 to 70204639 7 + TSS region transcription start site region 94004
Tssr94005 10 70204645 to 70204652 7 + TSS region transcription start site region 94005
Tssr94006 10 70204653 to 70204670 17 + TSS region transcription start site region 94006
Mrln 10 70204664 to 70219711 15047 + protein coding gene myoregulin
Tssr94007 10 70204675 to 70204684 9 + TSS region transcription start site region 94007
Cpgi1697 10 70244585 to 70245928 1343 CpG island CpG island 1697
Tssr94008 10 70245083 to 70245140 57 + TSS region transcription start site region 94008
Tssr94009 10 70245240 to 70245254 14 + TSS region transcription start site region 94009
Tssr94010 10 70245260 to 70245318 58 + TSS region transcription start site region 94010
Slc16a9 10 70245276 to 70285951 40675 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 9
Tssr94011 10 70246415 to 70246433 18 + TSS region transcription start site region 94011
D10Mit115 10 70276696 to 70276821 125 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 115
Gm7097 10 70284235 to 70284953 718 - antisense lncRNA gene predicted gene 7097
Tssr94012 10 70285506 to 70285511 5 + TSS region transcription start site region 94012
Gm9877 10 70285549 to 70288176 2627 - pseudogene predicted gene 9877
Tssr98037 10 70288147 to 70288150 3 - TSS region transcription start site region 98037
Tssr98038 10 70288156 to 70288166 10 - TSS region transcription start site region 98038
Tssr98039 10 70288528 to 70288548 20 - TSS region transcription start site region 98039
Gm40687 10 70289772 to 70308449 18677 + lncRNA gene predicted gene, 40687
Gm33704 10 70293395 to 70294057 662 + lncRNA gene predicted gene, 33704
Tssr94013 10 70293522 to 70293531 9 + TSS region transcription start site region 94013
Gm20108 10 70338302 to 70338454 152 + pseudogene predicted gene, 20108
Tssr94014 10 70359717 to 70359764 47 + TSS region transcription start site region 94014
Tssr98040 10 70364697 to 70364709 12 - TSS region transcription start site region 98040
Tssr94015 10 70364842 to 70364872 30 + TSS region transcription start site region 94015
Tssr94016 10 70365359 to 70365391 32 + TSS region transcription start site region 94016
Tssr94017 10 70365775 to 70365825 50 + TSS region transcription start site region 94017
Tssr98041 10 70367851 to 70367862 11 - TSS region transcription start site region 98041
Tssr94018 10 70378696 to 70378710 14 + TSS region transcription start site region 94018
Gm47946 10 70412460 to 70415581 3121 - lincRNA gene predicted gene, 47946
Cpgi1698 10 70440233 to 70441072 839 CpG island CpG island 1698
Fam13c 10 70440481 to 70558736 118255 + protein coding gene family with sequence similarity 13, member C
Tssr94019 10 70440643 to 70440672 29 + TSS region transcription start site region 94019
Tssr94020 10 70440676 to 70440720 44 + TSS region transcription start site region 94020
Tssr94021 10 70440844 to 70440937 93 + TSS region transcription start site region 94021
Gm22320 10 70501192 to 70501503 311 - unclassified non-coding RNA gene predicted gene, 22320
Gm29783 10 70504880 to 70505248 368 - pseudogene predicted gene, 29783
Cpgi1699 10 70520422 to 70521000 578 CpG island CpG island 1699
Tssr94022 10 70520478 to 70520489 11 + TSS region transcription start site region 94022
Phyhipl 10 70557686 to 70599291 41605 - protein coding gene phytanoyl-CoA hydroxylase interacting protein-like
Tssr98042 10 70559221 to 70559256 35 - TSS region transcription start site region 98042
Tssr98043 10 70559413 to 70559430 17 - TSS region transcription start site region 98043
Tssr3242 10 70592771 to 70592776 5 - TSS region transcription start site region 3242
Tssr98044 10 70592782 to 70592848 66 - TSS region transcription start site region 98044
Tssr98045 10 70592860 to 70592865 5 - TSS region transcription start site region 98045
Cpgi1700 10 70598471 to 70600384 1913 CpG island CpG island 1700
Tssr98046 10 70599271 to 70599282 11 - TSS region transcription start site region 98046
Tssr98047 10 70599284 to 70599301 17 - TSS region transcription start site region 98047
Tssr3243 10 70599309 to 70599312 3 - TSS region transcription start site region 3243
Tssr98048 10 70599314 to 70599323 9 - TSS region transcription start site region 98048
Gm46232 10 70599778 to 70680214 80436 + lncRNA gene predicted gene, 46232
Tssr94023 10 70599814 to 70599836 22 + TSS region transcription start site region 94023
BB187676 10 70599825 to 70600477 652 unclassified gene expressed sequence BB187676
D630013N20Rik 10 70601049 to 70655963 54914 - lncRNA gene RIKEN cDNA D630013N20 gene
Tssr98049 10 70606036 to 70606042 6 - TSS region transcription start site region 98049
Gm40688 10 70626728 to 70635263 8535 + lncRNA gene predicted gene, 40688
Tssr98050 10 70644695 to 70644707 12 - TSS region transcription start site region 98050
Tssr98051 10 70644875 to 70644888 13 - TSS region transcription start site region 98051
Tssr98052 10 70644897 to 70644907 10 - TSS region transcription start site region 98052
Tssr98053 10 70655934 to 70655972 38 - TSS region transcription start site region 98053
Gm33979 10 70714928 to 70738844 23916 - lincRNA gene predicted gene, 33979
Gm48021 10 70807242 to 70813822 6580 + lincRNA gene predicted gene, 48021
Gm48022 10 70813845 to 70816052 2207 + lincRNA gene predicted gene, 48022
Cpgi1701 10 70830753 to 70831032 279 CpG island CpG island 1701
Gm40689 10 70830755 to 70837863 7108 + lincRNA gene predicted gene, 40689
Tssr94024 10 70837679 to 70837683 4 + TSS region transcription start site region 94024
Gm48023 10 70847017 to 70853726 6709 + lincRNA gene predicted gene, 48023
Gm48024 10 70863399 to 70868452 5053 - lincRNA gene predicted gene, 48024
4930533K18Rik 10 70868621 to 70910761 42140 + antisense lncRNA gene RIKEN cDNA 4930533K18 gene
Tssr94025 10 70868633 to 70868652 19 + TSS region transcription start site region 94025
Gm48036 10 70869997 to 70872420 2423 - lincRNA gene predicted gene, 48036
Gm24486 10 70882104 to 70882210 106 + snRNA gene predicted gene, 24486
Bicc1 10 70922837 to 71159690 236853 - protein coding gene BicC family RNA binding protein 1
Tssr98054 10 70923786 to 70923805 19 - TSS region transcription start site region 98054
Gm48025 10 70975506 to 70993040 17534 - sense intronic lncRNA gene predicted gene, 48025
Tssr98055 10 71058520 to 71058524 4 - TSS region transcription start site region 98055
Tssr98056 10 71069837 to 71069839 2 - TSS region transcription start site region 98056
Gm15647 10 71082876 to 71083651 775 + antisense lncRNA gene predicted gene 15647
Tssr98057 10 71115156 to 71115160 4 - TSS region transcription start site region 98057
Gm34137 10 71125656 to 71141572 15916 + lncRNA gene predicted gene, 34137
Tssr94026 10 71131540 to 71131561 21 + TSS region transcription start site region 94026
Tssr98058 10 71143529 to 71143554 25 - TSS region transcription start site region 98058
Tssr98059 10 71143626 to 71143630 4 - TSS region transcription start site region 98059
Gm32025 10 71148160 to 71148466 306 + pseudogene predicted gene, 32025
Tssr98060 10 71156440 to 71156443 3 - TSS region transcription start site region 98060
Cpgi1702 10 71158961 to 71160173 1212 CpG island CpG island 1702
Tssr98061 10 71158971 to 71158972 1 - TSS region transcription start site region 98061
Tssr98062 10 71159574 to 71159581 7 - TSS region transcription start site region 98062
Tssr98063 10 71159657 to 71159671 14 - TSS region transcription start site region 98063
Tssr98064 10 71159676 to 71159708 32 - TSS region transcription start site region 98064
Tssr98065 10 71159716 to 71159734 18 - TSS region transcription start site region 98065
Tssr98066 10 71159809 to 71159829 20 - TSS region transcription start site region 98066
Tssr98067 10 71159830 to 71159868 38 - TSS region transcription start site region 98067
Gm6331 10 71162928 to 71163377 449 + pseudogene predicted gene 6331
C730027H18Rik 10 71168737 to 71182040 13303 - lincRNA gene RIKEN cDNA C730027H18 gene
Gm34328 10 71181166 to 71201144 19978 + lncRNA gene predicted gene, 34328
Tssr94027 10 71181355 to 71181398 43 + TSS region transcription start site region 94027
Tssr98068 10 71182017 to 71182058 41 - TSS region transcription start site region 98068