Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:69569717-71149764

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phl2 10 48098403 to 70276821 22178418 QTL progressive hearing loss 2
4833431D13Rik 10 69396956 to 69602137 205181 unclassified non-coding RNA gene RIKEN cDNA 4833431D13 gene
Ank3 10 69533580 to 70027436 493856 + protein coding gene ankyrin 3, epithelial
Tssr93948 10 69572674 to 69572689 15 + TSS region transcription start site region 93948
Tssr93949 10 69572981 to 69572997 16 + TSS region transcription start site region 93949
Tssr93950 10 69574668 to 69574673 5 + TSS region transcription start site region 93950
D10Mit32 10 69589010 to 69589241 231 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 32
Tssr93951 10 69630791 to 69630795 4 + TSS region transcription start site region 93951
Tssr93952 10 69681631 to 69681636 5 + TSS region transcription start site region 93952
9430064K01Rik 10 69689083 to 69690175 1092 unclassified gene RIKEN cDNA 9430064K01 gene
Tssr93953 10 69706070 to 69706090 20 + TSS region transcription start site region 93953
Tssr3238 10 69706173 to 69706184 11 + TSS region transcription start site region 3238
Tssr93954 10 69706194 to 69706215 21 + TSS region transcription start site region 93954
Tssr93955 10 69706229 to 69706266 37 + TSS region transcription start site region 93955
Tssr93956 10 69706319 to 69706324 5 + TSS region transcription start site region 93956
Tssr93957 10 69706326 to 69706382 56 + TSS region transcription start site region 93957
Tssr93958 10 69706466 to 69706493 27 + TSS region transcription start site region 93958
Tssr93959 10 69706501 to 69706545 44 + TSS region transcription start site region 93959
Tssr93960 10 69706656 to 69706669 13 + TSS region transcription start site region 93960
Tssr93961 10 69747014 to 69747030 16 + TSS region transcription start site region 93961
Tssr93962 10 69747045 to 69747053 8 + TSS region transcription start site region 93962
Hfhl4 10 69760207 to 69760207 0 QTL high-frequency hearing loss 4
Tssr93963 10 69764653 to 69764669 16 + TSS region transcription start site region 93963
Tssr93964 10 69764933 to 69764942 9 + TSS region transcription start site region 93964
Tssr93965 10 69785507 to 69785523 16 + TSS region transcription start site region 93965
Tssr93966 10 69785605 to 69785637 32 + TSS region transcription start site region 93966
Tssr93967 10 69787391 to 69787402 11 + TSS region transcription start site region 93967
Tssr93968 10 69787431 to 69787458 27 + TSS region transcription start site region 93968
Tssr93969 10 69787513 to 69787537 24 + TSS region transcription start site region 93969
Cpgi1693 10 69822156 to 69822476 320 CpG island CpG island 1693
D10Mit114 10 69841742 to 69841938 196 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 114
Gm33416 10 69862685 to 69866391 3706 - lncRNA gene predicted gene, 33416
Tssr3239 10 69872174 to 69872178 4 + TSS region transcription start site region 3239
D10Mit224 10 69881093 to 69881200 107 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 224
Gm33361 10 69907046 to 69909312 2266 - lncRNA gene predicted gene, 33361
2900006A17Rik 10 69907184 to 69907980 796 unclassified gene RIKEN cDNA 2900006A17 gene
Tssr93970 10 69924136 to 69924151 15 + TSS region transcription start site region 93970
Tssr93971 10 69925484 to 69925502 18 + TSS region transcription start site region 93971
Tssr93972 10 69925766 to 69925786 20 + TSS region transcription start site region 93972
Tssr93973 10 69925800 to 69925824 24 + TSS region transcription start site region 93973
Tssr93974 10 69925829 to 69925853 24 + TSS region transcription start site region 93974
Tssr93975 10 69925855 to 69925870 15 + TSS region transcription start site region 93975
Tssr93976 10 69925978 to 69925985 7 + TSS region transcription start site region 93976
Tssr3240 10 69980333 to 69980348 15 + TSS region transcription start site region 3240
Tssr93977 10 69988472 to 69988476 4 + TSS region transcription start site region 93977
Tssr93978 10 69993102 to 69993117 15 + TSS region transcription start site region 93978
Tssr93979 10 69993289 to 69993300 11 + TSS region transcription start site region 93979
Tssr93980 10 69994389 to 69994412 23 + TSS region transcription start site region 93980
Cpgi1694 10 70004864 to 70005164 300 CpG island CpG island 1694
Tssr93981 10 70006227 to 70006231 4 + TSS region transcription start site region 93981
Tssr93982 10 70024952 to 70024956 4 + TSS region transcription start site region 93982
Tssr93983 10 70025687 to 70025700 13 + TSS region transcription start site region 93983
Tssr93984 10 70026290 to 70026295 5 + TSS region transcription start site region 93984
Cpgi1695 10 70059980 to 70060200 220 CpG island CpG island 1695
Tssr93985 10 70060150 to 70060162 12 + TSS region transcription start site region 93985
Tssr93986 10 70060187 to 70060194 7 + TSS region transcription start site region 93986
Tssr93987 10 70095351 to 70095353 2 + TSS region transcription start site region 93987
Cpgi1696 10 70096479 to 70098276 1797 CpG island CpG island 1696
Tssr98035 10 70096725 to 70096765 40 - TSS region transcription start site region 98035
Tssr93988 10 70096826 to 70096859 33 + TSS region transcription start site region 93988
Tssr93989 10 70096960 to 70096965 5 + TSS region transcription start site region 93989
Tssr93990 10 70097102 to 70097211 109 + TSS region transcription start site region 93990
Ccdc6 10 70097121 to 70193200 96079 + protein coding gene coiled-coil domain containing 6
Tssr93991 10 70097212 to 70097235 23 + TSS region transcription start site region 93991
Tssr3241 10 70097237 to 70097250 13 + TSS region transcription start site region 3241
Tssr93992 10 70097264 to 70097301 37 + TSS region transcription start site region 93992
Tssr93993 10 70110024 to 70110027 3 + TSS region transcription start site region 93993
Tssr93994 10 70110268 to 70110296 28 + TSS region transcription start site region 93994
Tssr93995 10 70110300 to 70110307 7 + TSS region transcription start site region 93995
Tssr93996 10 70111965 to 70111972 7 + TSS region transcription start site region 93996
Tssr93997 10 70169156 to 70169169 13 + TSS region transcription start site region 93997
Tssr93998 10 70175013 to 70175020 7 + TSS region transcription start site region 93998
Tssr93999 10 70182081 to 70182092 11 + TSS region transcription start site region 93999
Tssr94000 10 70189206 to 70189234 28 + TSS region transcription start site region 94000
Tssr94001 10 70190426 to 70190438 12 + TSS region transcription start site region 94001
Tssr94002 10 70191192 to 70191197 5 + TSS region transcription start site region 94002
Tssr94003 10 70194871 to 70194885 14 + TSS region transcription start site region 94003
Tssr98036 10 70195432 to 70195458 26 - TSS region transcription start site region 98036
Tssr94004 10 70204632 to 70204639 7 + TSS region transcription start site region 94004
Tssr94005 10 70204645 to 70204652 7 + TSS region transcription start site region 94005
Tssr94006 10 70204653 to 70204670 17 + TSS region transcription start site region 94006
Mrln 10 70204664 to 70219711 15047 + protein coding gene myoregulin
Tssr94007 10 70204675 to 70204684 9 + TSS region transcription start site region 94007
Cpgi1697 10 70244585 to 70245928 1343 CpG island CpG island 1697
Tssr94008 10 70245083 to 70245140 57 + TSS region transcription start site region 94008
Tssr94009 10 70245240 to 70245254 14 + TSS region transcription start site region 94009
Tssr94010 10 70245260 to 70245318 58 + TSS region transcription start site region 94010
Slc16a9 10 70245276 to 70285951 40675 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 9
Tssr94011 10 70246415 to 70246433 18 + TSS region transcription start site region 94011
D10Mit115 10 70276696 to 70276821 125 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 115
Gm7097 10 70284235 to 70284953 718 - antisense lncRNA gene predicted gene 7097
Tssr94012 10 70285506 to 70285511 5 + TSS region transcription start site region 94012
Gm9877 10 70285549 to 70288176 2627 - pseudogene predicted gene 9877
Tssr98037 10 70288147 to 70288150 3 - TSS region transcription start site region 98037
Tssr98038 10 70288156 to 70288166 10 - TSS region transcription start site region 98038
Tssr98039 10 70288528 to 70288548 20 - TSS region transcription start site region 98039
Gm40687 10 70289772 to 70308449 18677 + lncRNA gene predicted gene, 40687
Gm33704 10 70293395 to 70294057 662 + lncRNA gene predicted gene, 33704
Tssr94013 10 70293522 to 70293531 9 + TSS region transcription start site region 94013
Gm20108 10 70338302 to 70338454 152 + pseudogene predicted gene, 20108
Tssr94014 10 70359717 to 70359764 47 + TSS region transcription start site region 94014
Tssr98040 10 70364697 to 70364709 12 - TSS region transcription start site region 98040
Tssr94015 10 70364842 to 70364872 30 + TSS region transcription start site region 94015
Tssr94016 10 70365359 to 70365391 32 + TSS region transcription start site region 94016
Tssr94017 10 70365775 to 70365825 50 + TSS region transcription start site region 94017
Tssr98041 10 70367851 to 70367862 11 - TSS region transcription start site region 98041
Tssr94018 10 70378696 to 70378710 14 + TSS region transcription start site region 94018
Gm47946 10 70412460 to 70415581 3121 - lincRNA gene predicted gene, 47946
Cpgi1698 10 70440233 to 70441072 839 CpG island CpG island 1698
Fam13c 10 70440481 to 70558736 118255 + protein coding gene family with sequence similarity 13, member C
Tssr94019 10 70440643 to 70440672 29 + TSS region transcription start site region 94019
Tssr94020 10 70440676 to 70440720 44 + TSS region transcription start site region 94020
Tssr94021 10 70440844 to 70440937 93 + TSS region transcription start site region 94021
Gm22320 10 70501192 to 70501503 311 - unclassified non-coding RNA gene predicted gene, 22320
Gm29783 10 70504880 to 70505248 368 - pseudogene predicted gene, 29783
Cpgi1699 10 70520422 to 70521000 578 CpG island CpG island 1699
Tssr94022 10 70520478 to 70520489 11 + TSS region transcription start site region 94022
Phyhipl 10 70557686 to 70599291 41605 - protein coding gene phytanoyl-CoA hydroxylase interacting protein-like
Tssr98042 10 70559221 to 70559256 35 - TSS region transcription start site region 98042
Tssr98043 10 70559413 to 70559430 17 - TSS region transcription start site region 98043
Tssr3242 10 70592771 to 70592776 5 - TSS region transcription start site region 3242
Tssr98044 10 70592782 to 70592848 66 - TSS region transcription start site region 98044
Tssr98045 10 70592860 to 70592865 5 - TSS region transcription start site region 98045
Cpgi1700 10 70598471 to 70600384 1913 CpG island CpG island 1700
Tssr98046 10 70599271 to 70599282 11 - TSS region transcription start site region 98046
Tssr98047 10 70599284 to 70599301 17 - TSS region transcription start site region 98047
Tssr3243 10 70599309 to 70599312 3 - TSS region transcription start site region 3243
Tssr98048 10 70599314 to 70599323 9 - TSS region transcription start site region 98048
Gm46232 10 70599778 to 70680214 80436 + lncRNA gene predicted gene, 46232
Tssr94023 10 70599814 to 70599836 22 + TSS region transcription start site region 94023
BB187676 10 70599825 to 70600477 652 unclassified gene expressed sequence BB187676
D630013N20Rik 10 70601049 to 70655963 54914 - lncRNA gene RIKEN cDNA D630013N20 gene
Tssr98049 10 70606036 to 70606042 6 - TSS region transcription start site region 98049
Gm40688 10 70626728 to 70635263 8535 + lncRNA gene predicted gene, 40688
Tssr98050 10 70644695 to 70644707 12 - TSS region transcription start site region 98050
Tssr98051 10 70644875 to 70644888 13 - TSS region transcription start site region 98051
Tssr98052 10 70644897 to 70644907 10 - TSS region transcription start site region 98052
Tssr98053 10 70655934 to 70655972 38 - TSS region transcription start site region 98053
Gm33979 10 70714928 to 70738844 23916 - lincRNA gene predicted gene, 33979
Gm48021 10 70807242 to 70813822 6580 + lincRNA gene predicted gene, 48021
Gm48022 10 70813845 to 70816052 2207 + lincRNA gene predicted gene, 48022
Cpgi1701 10 70830753 to 70831032 279 CpG island CpG island 1701
Gm40689 10 70830755 to 70837863 7108 + lincRNA gene predicted gene, 40689
Tssr94024 10 70837679 to 70837683 4 + TSS region transcription start site region 94024
Gm48023 10 70847017 to 70853726 6709 + lincRNA gene predicted gene, 48023
Gm48024 10 70863399 to 70868452 5053 - lincRNA gene predicted gene, 48024
4930533K18Rik 10 70868621 to 70910761 42140 + antisense lncRNA gene RIKEN cDNA 4930533K18 gene
Tssr94025 10 70868633 to 70868652 19 + TSS region transcription start site region 94025
Gm48036 10 70869997 to 70872420 2423 - lincRNA gene predicted gene, 48036
Gm24486 10 70882104 to 70882210 106 + snRNA gene predicted gene, 24486
Bicc1 10 70922837 to 71159690 236853 - protein coding gene BicC family RNA binding protein 1
Tssr98054 10 70923786 to 70923805 19 - TSS region transcription start site region 98054
Gm48025 10 70975506 to 70993040 17534 - sense intronic lncRNA gene predicted gene, 48025
Tssr98055 10 71058520 to 71058524 4 - TSS region transcription start site region 98055
Tssr98056 10 71069837 to 71069839 2 - TSS region transcription start site region 98056
Gm15647 10 71082876 to 71083651 775 + antisense lncRNA gene predicted gene 15647
Tssr98057 10 71115156 to 71115160 4 - TSS region transcription start site region 98057
Gm34137 10 71125656 to 71141572 15916 + lncRNA gene predicted gene, 34137
Tssr94026 10 71131540 to 71131561 21 + TSS region transcription start site region 94026
Tssr98058 10 71143529 to 71143554 25 - TSS region transcription start site region 98058
Tssr98059 10 71143626 to 71143630 4 - TSS region transcription start site region 98059
Gm32025 10 71148160 to 71148466 306 + pseudogene predicted gene, 32025