Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:63836853-66997672

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctnna3 10 63430098 to 65003667 1573569 + protein coding gene catenin (cadherin associated protein), alpha 3
Tssr93775 10 63858850 to 63858854 4 + TSS region transcription start site region 93775
Tssr93776 10 63859130 to 63859135 5 + TSS region transcription start site region 93776
Cpgi1657 10 63886789 to 63887009 220 CpG island CpG island 1657
Tssr93777 10 63906907 to 63906918 11 + TSS region transcription start site region 93777
B230219N15Rik 10 63910022 to 63915662 5640 unclassified gene RIKEN cDNA B230219N15 gene
Gm10118 10 63924866 to 63927434 2568 - protein coding gene predicted gene 10118
Lrrtm3 10 63928497 to 64090255 161758 - protein coding gene leucine rich repeat transmembrane neuronal 3
Tssr93778 10 63951593 to 63951595 2 + TSS region transcription start site region 93778
Tssr93779 10 63986369 to 63986372 3 + TSS region transcription start site region 93779
Tssr3224 10 63988061 to 63988067 6 + TSS region transcription start site region 3224
Tssr3225 10 63998161 to 63998162 1 + TSS region transcription start site region 3225
Tssr93780 10 64017768 to 64017772 4 + TSS region transcription start site region 93780
Tssr97918 10 64037902 to 64037934 32 - TSS region transcription start site region 97918
5830490A04Rik 10 64043579 to 64044909 1330 unclassified gene RIKEN cDNA 5830490A04 gene
Tssr93781 10 64055036 to 64055045 9 + TSS region transcription start site region 93781
Tssr97919 10 64055747 to 64055758 11 - TSS region transcription start site region 97919
4931432P07Rik 10 64068985 to 64072897 3912 unclassified gene RIKEN cDNA 4931432P07 gene
Tssr97920 10 64072877 to 64072898 21 - TSS region transcription start site region 97920
Cpgi1658 10 64087846 to 64088330 484 CpG island CpG island 1658
Tssr97921 10 64090178 to 64090192 14 - TSS region transcription start site region 97921
Tssr97922 10 64090193 to 64090210 17 - TSS region transcription start site region 97922
Tssr97923 10 64090241 to 64090262 21 - TSS region transcription start site region 97923
Tssr97924 10 64090265 to 64090297 32 - TSS region transcription start site region 97924
Tssr97925 10 64090298 to 64090309 11 - TSS region transcription start site region 97925
Tssr93782 10 64090923 to 64090928 5 + TSS region transcription start site region 93782
D10Mit221 10 64198983 to 64199092 109 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 221
Gm23854 10 64304637 to 64304744 107 - snRNA gene predicted gene, 23854
Tssr93783 10 64314523 to 64314527 4 + TSS region transcription start site region 93783
D10Mit195 10 64316749 to 64316891 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 195
D10Mit30 10 64417966 to 64418251 285 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 30
Tssr93784 10 64608427 to 64608432 5 + TSS region transcription start site region 93784
Tssr93785 10 64686469 to 64686471 2 + TSS region transcription start site region 93785
D10Mit220 10 64914351 to 64914473 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 220
D10Mit129 10 64999479 to 64999567 88 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 129
Gm28881 10 65119526 to 65120367 841 - lincRNA gene predicted gene 28881
D10Mit185 10 65120455 to 65120603 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 185
Gm7540 10 65416853 to 65417672 819 + pseudogene predicted gene 7540
D10Mit111 10 65444141 to 65444339 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 111
D10Mit240 10 65475132 to 65475301 169 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 240
Gm4796 10 65534654 to 65535277 623 + pseudogene predicted gene 4796
Tssr93786 10 65643851 to 65643857 6 + TSS region transcription start site region 93786
Marcksl1-ps1 10 65767877 to 65768569 692 + pseudogene MARCKS-like 1, pseudogene 1
Gm19116 10 65771558 to 65772199 641 - pseudogene predicted gene, 19116
Gm30853 10 65875663 to 65908250 32587 - lincRNA gene predicted gene, 30853
Tssr97926 10 65908227 to 65908258 31 - TSS region transcription start site region 97926
1700023F02Rik 10 66120609 to 66124064 3455 - lincRNA gene RIKEN cDNA 1700023F02 gene
Tssr97927 10 66124058 to 66124069 11 - TSS region transcription start site region 97927
4930407I19Rik 10 66145296 to 66179514 34218 + lincRNA gene RIKEN cDNA 4930407I19 gene
Gm31056 10 66163757 to 66200465 36708 - lncRNA gene predicted gene, 31056
Gm22829 10 66170401 to 66170506 105 - snRNA gene predicted gene, 22829
Tssr3226 10 66200487 to 66200492 5 - TSS region transcription start site region 3226
Gm18509 10 66253811 to 66254727 916 - pseudogene predicted gene, 18509
Gm40677 10 66293284 to 66512512 219228 - lncRNA gene predicted gene, 40677
Gm22594 10 66483553 to 66483682 129 + snoRNA gene predicted gene, 22594
Bbaa18 10 66502233 to 66502378 145 QTL B.burgdorferi-associated arthritis 18
D10Mit130 10 66502233 to 66502378 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 130
D10Mit299 10 66567361 to 66567546 185 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 299
Gm28139 10 66640918 to 66641862 944 + lincRNA gene predicted gene 28139
Gm47894 10 66691342 to 66691615 273 - pseudogene predicted gene, 47894
Tssr97928 10 66698087 to 66698096 9 - TSS region transcription start site region 97928
Tssr97929 10 66698098 to 66698148 50 - TSS region transcription start site region 97929
Tssr97930 10 66698151 to 66698167 16 - TSS region transcription start site region 97930
Tssr93787 10 66698210 to 66698217 7 + TSS region transcription start site region 93787
Tssr93788 10 66698238 to 66698247 9 + TSS region transcription start site region 93788
Gm31181 10 66698241 to 66705961 7720 + lincRNA gene predicted gene, 31181
Tssr93789 10 66698256 to 66698265 9 + TSS region transcription start site region 93789
Tssr93790 10 66698279 to 66698298 19 + TSS region transcription start site region 93790
Gm18777 10 66740286 to 66741135 849 - pseudogene predicted gene, 18777
Gm31240 10 66740926 to 66745585 4659 - lncRNA gene predicted gene, 31240
Gm47895 10 66759454 to 66762095 2641 + lincRNA gene predicted gene, 47895
Cpgi1659 10 66772875 to 66773092 217 CpG island CpG island 1659
Gm40678 10 66803950 to 66829667 25717 - lncRNA gene predicted gene, 40678
Gm47896 10 66809840 to 66822354 12514 + lincRNA gene predicted gene, 47896
Gm47897 10 66824169 to 66827403 3234 + lincRNA gene predicted gene, 47897
Gm31416 10 66832144 to 66911559 79415 - lncRNA gene predicted gene, 31416
Gm47900 10 66837597 to 66839501 1904 + lincRNA gene predicted gene, 47900
Tssr93791 10 66865274 to 66865294 20 + TSS region transcription start site region 93791
D10Mit61.1 10 66866670 to 66866786 116 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 61.1
D10Mit61 10 66866787 to 66866931 144 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 61
Gm47903 10 66889671 to 66891612 1941 - lincRNA gene predicted gene, 47903
Tssr97931 10 66911403 to 66911434 31 - TSS region transcription start site region 97931
Tssr97932 10 66911469 to 66911483 14 - TSS region transcription start site region 97932
1110002J07Rik 10 66912489 to 66920258 7769 - lincRNA gene RIKEN cDNA 1110002J07 gene
Cpgi1660 10 66913359 to 66913562 203 CpG island CpG island 1660
Gm26576 10 66920302 to 66923599 3297 + lincRNA gene predicted gene, 26576
Tssr97933 10 66921269 to 66921309 40 - TSS region transcription start site region 97933
Tssr97934 10 66930855 to 66930869 14 - TSS region transcription start site region 97934
Tssr93792 10 66968773 to 66968789 16 + TSS region transcription start site region 93792
Tssr93793 10 66997200 to 66997203 3 + TSS region transcription start site region 93793