Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:63271043-64371057

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Herc4 10 63243810 to 63317878 74068 + protein coding gene hect domain and RLD 4
Tssr93755 10 63280964 to 63280976 12 + TSS region transcription start site region 93755
D230019N24Rik 10 63292285 to 63295792 3507 unclassified gene RIKEN cDNA D230019N24 gene
Gm26789 10 63292286 to 63295793 3507 - antisense lncRNA gene predicted gene, 26789
Sirt1 10 63319005 to 63339035 20030 - protein coding gene sirtuin 1
Tssr97912 10 63338124 to 63338129 5 - TSS region transcription start site region 97912
Cpgi1648 10 63338156 to 63339875 1719 CpG island CpG island 1648
Tssr97913 10 63338973 to 63338992 19 - TSS region transcription start site region 97913
Tssr97914 10 63339023 to 63339042 19 - TSS region transcription start site region 97914
Tssr97915 10 63339057 to 63339068 11 - TSS region transcription start site region 97915
Gm16145 10 63353853 to 63366887 13034 + antisense lncRNA gene predicted gene 16145
Cpgi1649 10 63381491 to 63381855 364 CpG island CpG island 1649
Cpgi1650 10 63382332 to 63382869 537 CpG island CpG island 1650
Dnajc12 10 63382443 to 63408840 26397 + protein coding gene DnaJ heat shock protein family (Hsp40) member C12
Tssr97916 10 63382744 to 63382794 50 - TSS region transcription start site region 97916
Cpgi1651 10 63386491 to 63386891 400 CpG island CpG island 1651
Tssr93756 10 63386550 to 63386576 26 + TSS region transcription start site region 93756
Tssr93757 10 63386577 to 63386589 12 + TSS region transcription start site region 93757
Tssr93758 10 63386594 to 63386641 47 + TSS region transcription start site region 93758
Tssr93759 10 63386644 to 63386662 18 + TSS region transcription start site region 93759
Tssr93760 10 63397237 to 63397264 27 + TSS region transcription start site region 93760
Cpgi1652 10 63412898 to 63413060 162 CpG island CpG island 1652
Gm7530 10 63412999 to 63413603 604 + pseudogene predicted gene 7530
Tssr93761 10 63416365 to 63416366 1 + TSS region transcription start site region 93761
Gm7075 10 63421365 to 63421789 424 - pseudogene predicted gene 7075
Cpgi1653 10 63421658 to 63421811 153 CpG island CpG island 1653
Tssr97917 10 63429435 to 63429437 2 - TSS region transcription start site region 97917
Cpgi1654 10 63429459 to 63430299 840 CpG island CpG island 1654
n-TStga3 10 63429476 to 63429557 81 - tRNA gene nuclear encoded tRNA serine 3 (anticodon TGA)
Tssr93762 10 63430061 to 63430085 24 + TSS region transcription start site region 93762
Tssr93763 10 63430092 to 63430105 13 + TSS region transcription start site region 93763
Ctnna3 10 63430098 to 65003667 1573569 + protein coding gene catenin (cadherin associated protein), alpha 3
Tssr93764 10 63457505 to 63457539 34 + TSS region transcription start site region 93764
Tssr93765 10 63457549 to 63457555 6 + TSS region transcription start site region 93765
Tssr93766 10 63457578 to 63457583 5 + TSS region transcription start site region 93766
Tssr93767 10 63480294 to 63480308 14 + TSS region transcription start site region 93767
Tssr93768 10 63480321 to 63480348 27 + TSS region transcription start site region 93768
Tssr93769 10 63528384 to 63528387 3 + TSS region transcription start site region 93769
Cpgi1655 10 63583603 to 63583899 296 CpG island CpG island 1655
Cpgi1656 10 63585080 to 63585392 312 CpG island CpG island 1656
Tssr93770 10 63638304 to 63638307 3 + TSS region transcription start site region 93770
Tssr93771 10 63655188 to 63655194 6 + TSS region transcription start site region 93771
Tssr93772 10 63683307 to 63683310 3 + TSS region transcription start site region 93772
Tssr93773 10 63800869 to 63800875 6 + TSS region transcription start site region 93773
1700020K04Rik 10 63800870 to 63801352 482 unclassified gene RIKEN cDNA 1700020K04 gene
Gm30644 10 63813718 to 63818224 4506 - lncRNA gene predicted gene, 30644
Tssr93774 10 63821043 to 63821057 14 + TSS region transcription start site region 93774
Tssr93775 10 63858850 to 63858854 4 + TSS region transcription start site region 93775
Tssr93776 10 63859130 to 63859135 5 + TSS region transcription start site region 93776
Cpgi1657 10 63886789 to 63887009 220 CpG island CpG island 1657
Tssr93777 10 63906907 to 63906918 11 + TSS region transcription start site region 93777
B230219N15Rik 10 63910022 to 63915662 5640 unclassified gene RIKEN cDNA B230219N15 gene
Gm10118 10 63924866 to 63927434 2568 - protein coding gene predicted gene 10118
Lrrtm3 10 63928497 to 64090255 161758 - protein coding gene leucine rich repeat transmembrane neuronal 3
Tssr93778 10 63951593 to 63951595 2 + TSS region transcription start site region 93778
Tssr93779 10 63986369 to 63986372 3 + TSS region transcription start site region 93779
Tssr3224 10 63988061 to 63988067 6 + TSS region transcription start site region 3224
Tssr3225 10 63998161 to 63998162 1 + TSS region transcription start site region 3225
Tssr93780 10 64017768 to 64017772 4 + TSS region transcription start site region 93780
Tssr97918 10 64037902 to 64037934 32 - TSS region transcription start site region 97918
5830490A04Rik 10 64043579 to 64044909 1330 unclassified gene RIKEN cDNA 5830490A04 gene
Tssr93781 10 64055036 to 64055045 9 + TSS region transcription start site region 93781
Tssr97919 10 64055747 to 64055758 11 - TSS region transcription start site region 97919
4931432P07Rik 10 64068985 to 64072897 3912 unclassified gene RIKEN cDNA 4931432P07 gene
Tssr97920 10 64072877 to 64072898 21 - TSS region transcription start site region 97920
Cpgi1658 10 64087846 to 64088330 484 CpG island CpG island 1658
Tssr97921 10 64090178 to 64090192 14 - TSS region transcription start site region 97921
Tssr97922 10 64090193 to 64090210 17 - TSS region transcription start site region 97922
Tssr97923 10 64090241 to 64090262 21 - TSS region transcription start site region 97923
Tssr97924 10 64090265 to 64090297 32 - TSS region transcription start site region 97924
Tssr97925 10 64090298 to 64090309 11 - TSS region transcription start site region 97925
Tssr93782 10 64090923 to 64090928 5 + TSS region transcription start site region 93782
D10Mit221 10 64198983 to 64199092 109 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 221
Gm23854 10 64304637 to 64304744 107 - snRNA gene predicted gene, 23854
Tssr93783 10 64314523 to 64314527 4 + TSS region transcription start site region 93783
D10Mit195 10 64316749 to 64316891 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 195