Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:62987448-63398204

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rufy2 10 62980223 to 63017210 36987 + protein coding gene RUN and FYVE domain-containing 2
Cpgi1642 10 62990823 to 62990990 167 CpG island CpG island 1642
Gm16135 10 62998779 to 62999689 910 + antisense lncRNA gene predicted gene 16135
Hnrnph3 10 63014664 to 63023932 9268 - protein coding gene heterogeneous nuclear ribonucleoprotein H3
Tssr97894 10 63017589 to 63017611 22 - TSS region transcription start site region 97894
Tssr97895 10 63018085 to 63018111 26 - TSS region transcription start site region 97895
Tssr97896 10 63019904 to 63019911 7 - TSS region transcription start site region 97896
Cpgi1643 10 63022758 to 63024444 1686 CpG island CpG island 1643
Tssr93742 10 63023333 to 63023352 19 + TSS region transcription start site region 93742
Tssr97897 10 63023734 to 63023741 7 - TSS region transcription start site region 97897
Tssr97898 10 63023762 to 63023765 3 - TSS region transcription start site region 97898
Tssr97899 10 63023776 to 63023784 8 - TSS region transcription start site region 97899
Tssr97900 10 63023806 to 63023824 18 - TSS region transcription start site region 97900
Tssr97901 10 63023860 to 63023871 11 - TSS region transcription start site region 97901
Tssr97902 10 63023881 to 63023907 26 - TSS region transcription start site region 97902
Tssr97903 10 63023913 to 63023918 5 - TSS region transcription start site region 97903
Pbld2 10 63024315 to 63058813 34498 + protein coding gene phenazine biosynthesis-like protein domain containing 2
Tssr93743 10 63039101 to 63039117 16 + TSS region transcription start site region 93743
Gm16143 10 63055603 to 63056819 1216 - antisense lncRNA gene predicted gene 16143
Tssr97904 10 63057444 to 63057459 15 - TSS region transcription start site region 97904
Tssr97905 10 63057472 to 63057490 18 - TSS region transcription start site region 97905
Pbld1 10 63060624 to 63077964 17340 + protein coding gene phenazine biosynthesis-like protein domain containing 1
Tssr93744 10 63060630 to 63060657 27 + TSS region transcription start site region 93744
Tssr93745 10 63060725 to 63060752 27 + TSS region transcription start site region 93745
Tssr93746 10 63061535 to 63061548 13 + TSS region transcription start site region 93746
Tssr93747 10 63061586 to 63061602 16 + TSS region transcription start site region 93747
Gm48072 10 63072052 to 63075060 3008 - antisense lncRNA gene predicted gene, 48072
Gm38063 10 63098349 to 63098690 341 + unclassified gene predicted gene, 38063
Atoh7 10 63099651 to 63101279 1628 + protein coding gene atonal bHLH transcription factor 7
Cpgi1644 10 63099698 to 63100893 1195 CpG island CpG island 1644
Tssr93748 10 63099782 to 63099792 10 + TSS region transcription start site region 93748
Mypn 10 63115795 to 63203952 88157 - protein coding gene myopalladin
Cpgi1645 10 63130896 to 63131166 270 CpG island CpG island 1645
Tssr93749 10 63182801 to 63182808 7 + TSS region transcription start site region 93749
Cpgi1646 10 63192448 to 63193204 756 CpG island CpG island 1646
n-TMcat18 10 63194240 to 63194332 92 - tRNA gene nuclear encoded tRNA methionine 18 (anticodon CAT)
Tssr97906 10 63203866 to 63203877 11 - TSS region transcription start site region 97906
Tssr97907 10 63203882 to 63203887 5 - TSS region transcription start site region 97907
Tssr97908 10 63203899 to 63203920 21 - TSS region transcription start site region 97908
Tssr97909 10 63203930 to 63203956 26 - TSS region transcription start site region 97909
1700120B22Rik 10 63243068 to 63244153 1085 - bidirectional promoter lncRNA gene RIKEN cDNA 1700120B22 gene
Tssr97910 10 63243634 to 63243672 38 - TSS region transcription start site region 97910
Cpgi1647 10 63243637 to 63244578 941 CpG island CpG island 1647
Tssr93750 10 63243760 to 63243771 11 + TSS region transcription start site region 93750
Tssr93751 10 63243785 to 63243846 61 + TSS region transcription start site region 93751
Herc4 10 63243810 to 63317878 74068 + protein coding gene hect domain and RLD 4
Tssr93752 10 63243888 to 63243964 76 + TSS region transcription start site region 93752
Tssr93753 10 63243974 to 63243986 12 + TSS region transcription start site region 93753
Tssr93754 10 63244002 to 63244013 11 + TSS region transcription start site region 93754
Tssr97911 10 63244135 to 63244170 35 - TSS region transcription start site region 97911
Gm19337 10 63250932 to 63252515 1583 + unclassified gene predicted gene, 19337
Gm47615 10 63270090 to 63270868 778 + unclassified gene predicted gene, 47615
Tssr93755 10 63280964 to 63280976 12 + TSS region transcription start site region 93755
D230019N24Rik 10 63292285 to 63295792 3507 unclassified gene RIKEN cDNA D230019N24 gene
Gm26789 10 63292286 to 63295793 3507 - antisense lncRNA gene predicted gene, 26789
Sirt1 10 63319005 to 63339035 20030 - protein coding gene sirtuin 1
Tssr97912 10 63338124 to 63338129 5 - TSS region transcription start site region 97912
Cpgi1648 10 63338156 to 63339875 1719 CpG island CpG island 1648
Tssr97913 10 63338973 to 63338992 19 - TSS region transcription start site region 97913
Tssr97914 10 63339023 to 63339042 19 - TSS region transcription start site region 97914
Tssr97915 10 63339057 to 63339068 11 - TSS region transcription start site region 97915
Gm16145 10 63353853 to 63366887 13034 + antisense lncRNA gene predicted gene 16145
Cpgi1649 10 63381491 to 63381855 364 CpG island CpG island 1649
Cpgi1650 10 63382332 to 63382869 537 CpG island CpG island 1650
Dnajc12 10 63382443 to 63408840 26397 + protein coding gene DnaJ heat shock protein family (Hsp40) member C12
Tssr97916 10 63382744 to 63382794 50 - TSS region transcription start site region 97916
Cpgi1651 10 63386491 to 63386891 400 CpG island CpG island 1651
Tssr93756 10 63386550 to 63386576 26 + TSS region transcription start site region 93756
Tssr93757 10 63386577 to 63386589 12 + TSS region transcription start site region 93757
Tssr93758 10 63386594 to 63386641 47 + TSS region transcription start site region 93758
Tssr93759 10 63386644 to 63386662 18 + TSS region transcription start site region 93759
Tssr93760 10 63397237 to 63397264 27 + TSS region transcription start site region 93760