Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:62713718-64918224

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stox1 10 62659043 to 62726099 67056 - protein coding gene storkhead box 1
Cpgi1634 10 62725536 to 62726578 1042 CpG island CpG island 1634
Tssr97872 10 62726086 to 62726102 16 - TSS region transcription start site region 97872
Ccar1 10 62743928 to 62792286 48358 - protein coding gene cell division cycle and apoptosis regulator 1
Tssr97873 10 62753353 to 62753369 16 - TSS region transcription start site region 97873
Tssr97874 10 62756540 to 62756576 36 - TSS region transcription start site region 97874
Tssr93731 10 62761677 to 62761683 6 + TSS region transcription start site region 93731
Gm48145 10 62761751 to 62762079 328 + pseudogene predicted gene, 48145
Tssr97875 10 62764394 to 62764408 14 - TSS region transcription start site region 97875
Snord98 10 62765579 to 62765606 27 - snoRNA gene small nucleolar RNA, C/D box 98
Tssr97876 10 62777829 to 62777834 5 - TSS region transcription start site region 97876
Gm48146 10 62781757 to 62783187 1430 - unclassified gene predicted gene, 48146
Tssr97877 10 62785506 to 62785524 18 - TSS region transcription start site region 97877
Cpgi1635 10 62791591 to 62792625 1034 CpG island CpG island 1635
Tssr97878 10 62791972 to 62791987 15 - TSS region transcription start site region 97878
Tssr97879 10 62791988 to 62792023 35 - TSS region transcription start site region 97879
Tssr97880 10 62792243 to 62792290 47 - TSS region transcription start site region 97880
Tet1 10 62804570 to 62887581 83011 - protein coding gene tet methylcytosine dioxygenase 1
Tssr97881 10 62808358 to 62808382 24 - TSS region transcription start site region 97881
Cpgi1636 10 62812780 to 62813003 223 CpG island CpG island 1636
Tssr97882 10 62834965 to 62834976 11 - TSS region transcription start site region 97882
Tssr97883 10 62839878 to 62839908 30 - TSS region transcription start site region 97883
Gm48353 10 62858124 to 62859994 1870 - unclassified gene predicted gene, 48353
Tssr97884 10 62865242 to 62865277 35 - TSS region transcription start site region 97884
Tssr97885 10 62865279 to 62865290 11 - TSS region transcription start site region 97885
Tssr97886 10 62865299 to 62865328 29 - TSS region transcription start site region 97886
Tssr97887 10 62865331 to 62865345 14 - TSS region transcription start site region 97887
Tssr97888 10 62865438 to 62865471 33 - TSS region transcription start site region 97888
Cpgi1637 10 62865516 to 62865898 382 CpG island CpG island 1637
Tssr97889 10 62877058 to 62877065 7 - TSS region transcription start site region 97889
Tssr93732 10 62885646 to 62885672 26 + TSS region transcription start site region 93732
Cpgi1638 10 62886088 to 62887558 1470 CpG island CpG island 1638
Tssr97890 10 62887412 to 62887440 28 - TSS region transcription start site region 97890
Tssr97891 10 62887461 to 62887473 12 - TSS region transcription start site region 97891
Tssr93733 10 62892476 to 62892485 9 + TSS region transcription start site region 93733
Tssr97892 10 62892800 to 62892831 31 - TSS region transcription start site region 97892
Tssr97893 10 62892844 to 62892872 28 - TSS region transcription start site region 97893
Tssr93734 10 62893167 to 62893179 12 + TSS region transcription start site region 93734
Gm26479 10 62893409 to 62893514 105 - snRNA gene predicted gene, 26479
Tssr93735 10 62895756 to 62895776 20 + TSS region transcription start site region 93735
Gm22803 10 62919559 to 62919841 282 + unclassified non-coding RNA gene predicted gene, 22803
Cpgi1639 10 62919992 to 62921226 1234 CpG island CpG island 1639
Tssr93736 10 62920630 to 62920646 16 + TSS region transcription start site region 93736
Slc25a16 10 62920633 to 62946498 25865 + protein coding gene solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
Tssr93737 10 62920648 to 62920682 34 + TSS region transcription start site region 93737
Tssr93738 10 62920711 to 62920716 5 + TSS region transcription start site region 93738
Gm25862 10 62923396 to 62923524 128 - snoRNA gene predicted gene, 25862
Gm16128 10 62935750 to 62936323 573 + pseudogene predicted gene 16128
Cpgi1640 10 62946731 to 62947484 753 CpG island CpG island 1640
Tssr93739 10 62947011 to 62947073 62 + TSS region transcription start site region 93739
Dna2 10 62947026 to 62974185 27159 + protein coding gene DNA replication helicase/nuclease 2
Cpgi1641 10 62979975 to 62980914 939 CpG island CpG island 1641
Rufy2 10 62980223 to 63017210 36987 + protein coding gene RUN and FYVE domain-containing 2
Tssr93740 10 62980233 to 62980261 28 + TSS region transcription start site region 93740
Tssr93741 10 62980280 to 62980291 11 + TSS region transcription start site region 93741
Cpgi1642 10 62990823 to 62990990 167 CpG island CpG island 1642
Gm16135 10 62998779 to 62999689 910 + antisense lncRNA gene predicted gene 16135
Hnrnph3 10 63014664 to 63023932 9268 - protein coding gene heterogeneous nuclear ribonucleoprotein H3
Tssr97894 10 63017589 to 63017611 22 - TSS region transcription start site region 97894
Tssr97895 10 63018085 to 63018111 26 - TSS region transcription start site region 97895
Tssr97896 10 63019904 to 63019911 7 - TSS region transcription start site region 97896
Cpgi1643 10 63022758 to 63024444 1686 CpG island CpG island 1643
Tssr93742 10 63023333 to 63023352 19 + TSS region transcription start site region 93742
Tssr97897 10 63023734 to 63023741 7 - TSS region transcription start site region 97897
Tssr97898 10 63023762 to 63023765 3 - TSS region transcription start site region 97898
Tssr97899 10 63023776 to 63023784 8 - TSS region transcription start site region 97899
Tssr97900 10 63023806 to 63023824 18 - TSS region transcription start site region 97900
Tssr97901 10 63023860 to 63023871 11 - TSS region transcription start site region 97901
Tssr97902 10 63023881 to 63023907 26 - TSS region transcription start site region 97902
Tssr97903 10 63023913 to 63023918 5 - TSS region transcription start site region 97903
Pbld2 10 63024315 to 63058813 34498 + protein coding gene phenazine biosynthesis-like protein domain containing 2
Tssr93743 10 63039101 to 63039117 16 + TSS region transcription start site region 93743
Gm16143 10 63055603 to 63056819 1216 - antisense lncRNA gene predicted gene 16143
Tssr97904 10 63057444 to 63057459 15 - TSS region transcription start site region 97904
Tssr97905 10 63057472 to 63057490 18 - TSS region transcription start site region 97905
Pbld1 10 63060624 to 63077964 17340 + protein coding gene phenazine biosynthesis-like protein domain containing 1
Tssr93744 10 63060630 to 63060657 27 + TSS region transcription start site region 93744
Tssr93745 10 63060725 to 63060752 27 + TSS region transcription start site region 93745
Tssr93746 10 63061535 to 63061548 13 + TSS region transcription start site region 93746
Tssr93747 10 63061586 to 63061602 16 + TSS region transcription start site region 93747
Gm48072 10 63072052 to 63075060 3008 - antisense lncRNA gene predicted gene, 48072
Gm38063 10 63098349 to 63098690 341 + unclassified gene predicted gene, 38063
Atoh7 10 63099651 to 63101279 1628 + protein coding gene atonal bHLH transcription factor 7
Cpgi1644 10 63099698 to 63100893 1195 CpG island CpG island 1644
Tssr93748 10 63099782 to 63099792 10 + TSS region transcription start site region 93748
Mypn 10 63115795 to 63203952 88157 - protein coding gene myopalladin
Cpgi1645 10 63130896 to 63131166 270 CpG island CpG island 1645
Tssr93749 10 63182801 to 63182808 7 + TSS region transcription start site region 93749
Cpgi1646 10 63192448 to 63193204 756 CpG island CpG island 1646
n-TMcat18 10 63194240 to 63194332 92 - tRNA gene nuclear encoded tRNA methionine 18 (anticodon CAT)
Tssr97906 10 63203866 to 63203877 11 - TSS region transcription start site region 97906
Tssr97907 10 63203882 to 63203887 5 - TSS region transcription start site region 97907
Tssr97908 10 63203899 to 63203920 21 - TSS region transcription start site region 97908
Tssr97909 10 63203930 to 63203956 26 - TSS region transcription start site region 97909
1700120B22Rik 10 63243068 to 63244153 1085 - bidirectional promoter lncRNA gene RIKEN cDNA 1700120B22 gene
Tssr97910 10 63243634 to 63243672 38 - TSS region transcription start site region 97910
Cpgi1647 10 63243637 to 63244578 941 CpG island CpG island 1647
Tssr93750 10 63243760 to 63243771 11 + TSS region transcription start site region 93750
Tssr93751 10 63243785 to 63243846 61 + TSS region transcription start site region 93751
Herc4 10 63243810 to 63317878 74068 + protein coding gene hect domain and RLD 4
Tssr93752 10 63243888 to 63243964 76 + TSS region transcription start site region 93752
Tssr93753 10 63243974 to 63243986 12 + TSS region transcription start site region 93753
Tssr93754 10 63244002 to 63244013 11 + TSS region transcription start site region 93754
Tssr97911 10 63244135 to 63244170 35 - TSS region transcription start site region 97911
Gm19337 10 63250932 to 63252515 1583 + unclassified gene predicted gene, 19337
Gm47615 10 63270090 to 63270868 778 + unclassified gene predicted gene, 47615
Tssr93755 10 63280964 to 63280976 12 + TSS region transcription start site region 93755
D230019N24Rik 10 63292285 to 63295792 3507 unclassified gene RIKEN cDNA D230019N24 gene
Gm26789 10 63292286 to 63295793 3507 - antisense lncRNA gene predicted gene, 26789
Sirt1 10 63319005 to 63339035 20030 - protein coding gene sirtuin 1
Tssr97912 10 63338124 to 63338129 5 - TSS region transcription start site region 97912
Cpgi1648 10 63338156 to 63339875 1719 CpG island CpG island 1648
Tssr97913 10 63338973 to 63338992 19 - TSS region transcription start site region 97913
Tssr97914 10 63339023 to 63339042 19 - TSS region transcription start site region 97914
Tssr97915 10 63339057 to 63339068 11 - TSS region transcription start site region 97915
Gm16145 10 63353853 to 63366887 13034 + antisense lncRNA gene predicted gene 16145
Cpgi1649 10 63381491 to 63381855 364 CpG island CpG island 1649
Cpgi1650 10 63382332 to 63382869 537 CpG island CpG island 1650
Dnajc12 10 63382443 to 63408840 26397 + protein coding gene DnaJ heat shock protein family (Hsp40) member C12
Tssr97916 10 63382744 to 63382794 50 - TSS region transcription start site region 97916
Cpgi1651 10 63386491 to 63386891 400 CpG island CpG island 1651
Tssr93756 10 63386550 to 63386576 26 + TSS region transcription start site region 93756
Tssr93757 10 63386577 to 63386589 12 + TSS region transcription start site region 93757
Tssr93758 10 63386594 to 63386641 47 + TSS region transcription start site region 93758
Tssr93759 10 63386644 to 63386662 18 + TSS region transcription start site region 93759
Tssr93760 10 63397237 to 63397264 27 + TSS region transcription start site region 93760
Cpgi1652 10 63412898 to 63413060 162 CpG island CpG island 1652
Gm7530 10 63412999 to 63413603 604 + pseudogene predicted gene 7530
Tssr93761 10 63416365 to 63416366 1 + TSS region transcription start site region 93761
Gm7075 10 63421365 to 63421789 424 - pseudogene predicted gene 7075
Cpgi1653 10 63421658 to 63421811 153 CpG island CpG island 1653
Tssr97917 10 63429435 to 63429437 2 - TSS region transcription start site region 97917
Cpgi1654 10 63429459 to 63430299 840 CpG island CpG island 1654
n-TStga3 10 63429476 to 63429557 81 - tRNA gene nuclear encoded tRNA serine 3 (anticodon TGA)
Tssr93762 10 63430061 to 63430085 24 + TSS region transcription start site region 93762
Tssr93763 10 63430092 to 63430105 13 + TSS region transcription start site region 93763
Ctnna3 10 63430098 to 65003667 1573569 + protein coding gene catenin (cadherin associated protein), alpha 3
Tssr93764 10 63457505 to 63457539 34 + TSS region transcription start site region 93764
Tssr93765 10 63457549 to 63457555 6 + TSS region transcription start site region 93765
Tssr93766 10 63457578 to 63457583 5 + TSS region transcription start site region 93766
Tssr93767 10 63480294 to 63480308 14 + TSS region transcription start site region 93767
Tssr93768 10 63480321 to 63480348 27 + TSS region transcription start site region 93768
Tssr93769 10 63528384 to 63528387 3 + TSS region transcription start site region 93769
Cpgi1655 10 63583603 to 63583899 296 CpG island CpG island 1655
Cpgi1656 10 63585080 to 63585392 312 CpG island CpG island 1656
Tssr93770 10 63638304 to 63638307 3 + TSS region transcription start site region 93770
Tssr93771 10 63655188 to 63655194 6 + TSS region transcription start site region 93771
Tssr93772 10 63683307 to 63683310 3 + TSS region transcription start site region 93772
Tssr93773 10 63800869 to 63800875 6 + TSS region transcription start site region 93773
1700020K04Rik 10 63800870 to 63801352 482 unclassified gene RIKEN cDNA 1700020K04 gene
Gm30644 10 63813718 to 63818224 4506 - lncRNA gene predicted gene, 30644
Tssr93774 10 63821043 to 63821057 14 + TSS region transcription start site region 93774
Tssr93775 10 63858850 to 63858854 4 + TSS region transcription start site region 93775
Tssr93776 10 63859130 to 63859135 5 + TSS region transcription start site region 93776
Cpgi1657 10 63886789 to 63887009 220 CpG island CpG island 1657
Tssr93777 10 63906907 to 63906918 11 + TSS region transcription start site region 93777
B230219N15Rik 10 63910022 to 63915662 5640 unclassified gene RIKEN cDNA B230219N15 gene
Gm10118 10 63924866 to 63927434 2568 - protein coding gene predicted gene 10118
Lrrtm3 10 63928497 to 64090255 161758 - protein coding gene leucine rich repeat transmembrane neuronal 3
Tssr93778 10 63951593 to 63951595 2 + TSS region transcription start site region 93778
Tssr93779 10 63986369 to 63986372 3 + TSS region transcription start site region 93779
Tssr3224 10 63988061 to 63988067 6 + TSS region transcription start site region 3224
Tssr3225 10 63998161 to 63998162 1 + TSS region transcription start site region 3225
Tssr93780 10 64017768 to 64017772 4 + TSS region transcription start site region 93780
Tssr97918 10 64037902 to 64037934 32 - TSS region transcription start site region 97918
5830490A04Rik 10 64043579 to 64044909 1330 unclassified gene RIKEN cDNA 5830490A04 gene
Tssr93781 10 64055036 to 64055045 9 + TSS region transcription start site region 93781
Tssr97919 10 64055747 to 64055758 11 - TSS region transcription start site region 97919
4931432P07Rik 10 64068985 to 64072897 3912 unclassified gene RIKEN cDNA 4931432P07 gene
Tssr97920 10 64072877 to 64072898 21 - TSS region transcription start site region 97920
Cpgi1658 10 64087846 to 64088330 484 CpG island CpG island 1658
Tssr97921 10 64090178 to 64090192 14 - TSS region transcription start site region 97921
Tssr97922 10 64090193 to 64090210 17 - TSS region transcription start site region 97922
Tssr97923 10 64090241 to 64090262 21 - TSS region transcription start site region 97923
Tssr97924 10 64090265 to 64090297 32 - TSS region transcription start site region 97924
Tssr97925 10 64090298 to 64090309 11 - TSS region transcription start site region 97925
Tssr93782 10 64090923 to 64090928 5 + TSS region transcription start site region 93782
D10Mit221 10 64198983 to 64199092 109 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 221
Gm23854 10 64304637 to 64304744 107 - snRNA gene predicted gene, 23854
Tssr93783 10 64314523 to 64314527 4 + TSS region transcription start site region 93783
D10Mit195 10 64316749 to 64316891 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 195
D10Mit30 10 64417966 to 64418251 285 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 30
Tssr93784 10 64608427 to 64608432 5 + TSS region transcription start site region 93784
Tssr93785 10 64686469 to 64686471 2 + TSS region transcription start site region 93785
D10Mit220 10 64914351 to 64914473 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 220