Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:62598358-63018382

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ddx21 10 62580251 to 62602281 22030 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
Tssr93721 10 62598765 to 62598780 15 + TSS region transcription start site region 93721
Tssr93722 10 62598826 to 62598854 28 + TSS region transcription start site region 93722
Tssr97865 10 62599514 to 62599518 4 - TSS region transcription start site region 97865
Cpgi1631 10 62601918 to 62602883 965 CpG island CpG island 1631
Tssr97866 10 62602261 to 62602291 30 - TSS region transcription start site region 97866
Tssr93723 10 62602331 to 62602368 37 + TSS region transcription start site region 93723
Gm47257 10 62602350 to 62604128 1778 + bidirectional promoter lncRNA gene predicted gene, 47257
Tssr93724 10 62602369 to 62602392 23 + TSS region transcription start site region 93724
Ddx50 10 62615895 to 62651218 35323 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
Tssr97867 10 62616413 to 62616416 3 - TSS region transcription start site region 97867
Cpgi1632 10 62650571 to 62651913 1342 CpG island CpG island 1632
Tssr97868 10 62651170 to 62651192 22 - TSS region transcription start site region 97868
Tssr97869 10 62651194 to 62651234 40 - TSS region transcription start site region 97869
Tssr93725 10 62651666 to 62651677 11 + TSS region transcription start site region 93725
Tssr93726 10 62651687 to 62651706 19 + TSS region transcription start site region 93726
Tssr93727 10 62651712 to 62651726 14 + TSS region transcription start site region 93727
Stox1 10 62659043 to 62726099 67056 - protein coding gene storkhead box 1
Tssr97870 10 62664038 to 62664079 41 - TSS region transcription start site region 97870
Cpgi1633 10 62665078 to 62665308 230 CpG island CpG island 1633
Tssr97871 10 62665369 to 62665392 23 - TSS region transcription start site region 97871
Gm18514 10 62669803 to 62670238 435 + pseudogene predicted gene, 18514
Tssr93728 10 62672310 to 62672332 22 + TSS region transcription start site region 93728
Tssr93729 10 62678475 to 62678478 3 + TSS region transcription start site region 93729
Mir7215 10 62682508 to 62682558 50 + miRNA gene microRNA 7215
Tssr93730 10 62699375 to 62699377 2 + TSS region transcription start site region 93730
Gm47261 10 62702196 to 62702599 403 + pseudogene predicted gene, 47261
Cpgi1634 10 62725536 to 62726578 1042 CpG island CpG island 1634
Tssr97872 10 62726086 to 62726102 16 - TSS region transcription start site region 97872
Ccar1 10 62743928 to 62792286 48358 - protein coding gene cell division cycle and apoptosis regulator 1
Tssr97873 10 62753353 to 62753369 16 - TSS region transcription start site region 97873
Tssr97874 10 62756540 to 62756576 36 - TSS region transcription start site region 97874
Tssr93731 10 62761677 to 62761683 6 + TSS region transcription start site region 93731
Gm48145 10 62761751 to 62762079 328 + pseudogene predicted gene, 48145
Tssr97875 10 62764394 to 62764408 14 - TSS region transcription start site region 97875
Snord98 10 62765579 to 62765606 27 - snoRNA gene small nucleolar RNA, C/D box 98
Tssr97876 10 62777829 to 62777834 5 - TSS region transcription start site region 97876
Gm48146 10 62781757 to 62783187 1430 - unclassified gene predicted gene, 48146
Tssr97877 10 62785506 to 62785524 18 - TSS region transcription start site region 97877
Cpgi1635 10 62791591 to 62792625 1034 CpG island CpG island 1635
Tssr97878 10 62791972 to 62791987 15 - TSS region transcription start site region 97878
Tssr97879 10 62791988 to 62792023 35 - TSS region transcription start site region 97879
Tssr97880 10 62792243 to 62792290 47 - TSS region transcription start site region 97880
Tet1 10 62804570 to 62887581 83011 - protein coding gene tet methylcytosine dioxygenase 1
Tssr97881 10 62808358 to 62808382 24 - TSS region transcription start site region 97881
Cpgi1636 10 62812780 to 62813003 223 CpG island CpG island 1636
Tssr97882 10 62834965 to 62834976 11 - TSS region transcription start site region 97882
Tssr97883 10 62839878 to 62839908 30 - TSS region transcription start site region 97883
Gm48353 10 62858124 to 62859994 1870 - unclassified gene predicted gene, 48353
Tssr97884 10 62865242 to 62865277 35 - TSS region transcription start site region 97884
Tssr97885 10 62865279 to 62865290 11 - TSS region transcription start site region 97885
Tssr97886 10 62865299 to 62865328 29 - TSS region transcription start site region 97886
Tssr97887 10 62865331 to 62865345 14 - TSS region transcription start site region 97887
Tssr97888 10 62865438 to 62865471 33 - TSS region transcription start site region 97888
Cpgi1637 10 62865516 to 62865898 382 CpG island CpG island 1637
Tssr97889 10 62877058 to 62877065 7 - TSS region transcription start site region 97889
Tssr93732 10 62885646 to 62885672 26 + TSS region transcription start site region 93732
Cpgi1638 10 62886088 to 62887558 1470 CpG island CpG island 1638
Tssr97890 10 62887412 to 62887440 28 - TSS region transcription start site region 97890
Tssr97891 10 62887461 to 62887473 12 - TSS region transcription start site region 97891
Tssr93733 10 62892476 to 62892485 9 + TSS region transcription start site region 93733
Tssr97892 10 62892800 to 62892831 31 - TSS region transcription start site region 97892
Tssr97893 10 62892844 to 62892872 28 - TSS region transcription start site region 97893
Tssr93734 10 62893167 to 62893179 12 + TSS region transcription start site region 93734
Gm26479 10 62893409 to 62893514 105 - snRNA gene predicted gene, 26479
Tssr93735 10 62895756 to 62895776 20 + TSS region transcription start site region 93735
Gm22803 10 62919559 to 62919841 282 + unclassified non-coding RNA gene predicted gene, 22803
Cpgi1639 10 62919992 to 62921226 1234 CpG island CpG island 1639
Tssr93736 10 62920630 to 62920646 16 + TSS region transcription start site region 93736
Slc25a16 10 62920633 to 62946498 25865 + protein coding gene solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
Tssr93737 10 62920648 to 62920682 34 + TSS region transcription start site region 93737
Tssr93738 10 62920711 to 62920716 5 + TSS region transcription start site region 93738
Gm25862 10 62923396 to 62923524 128 - snoRNA gene predicted gene, 25862
Gm16128 10 62935750 to 62936323 573 + pseudogene predicted gene 16128
Cpgi1640 10 62946731 to 62947484 753 CpG island CpG island 1640
Tssr93739 10 62947011 to 62947073 62 + TSS region transcription start site region 93739
Dna2 10 62947026 to 62974185 27159 + protein coding gene DNA replication helicase/nuclease 2
Cpgi1641 10 62979975 to 62980914 939 CpG island CpG island 1641
Rufy2 10 62980223 to 63017210 36987 + protein coding gene RUN and FYVE domain-containing 2
Tssr93740 10 62980233 to 62980261 28 + TSS region transcription start site region 93740
Tssr93741 10 62980280 to 62980291 11 + TSS region transcription start site region 93741
Cpgi1642 10 62990823 to 62990990 167 CpG island CpG island 1642
Gm16135 10 62998779 to 62999689 910 + antisense lncRNA gene predicted gene 16135
Hnrnph3 10 63014664 to 63023932 9268 - protein coding gene heterogeneous nuclear ribonucleoprotein H3
Tssr97894 10 63017589 to 63017611 22 - TSS region transcription start site region 97894
Tssr97895 10 63018085 to 63018111 26 - TSS region transcription start site region 97895