Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:62512310-62832332

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Srgn 10 62493833 to 62527451 33618 - protein coding gene serglycin
Tssr97853 10 62513476 to 62513499 23 - TSS region transcription start site region 97853
Tssr97854 10 62513523 to 62513527 4 - TSS region transcription start site region 97854
Tssr97855 10 62513539 to 62513549 10 - TSS region transcription start site region 97855
Tssr97856 10 62514358 to 62514370 12 - TSS region transcription start site region 97856
Tssr97857 10 62514373 to 62514384 11 - TSS region transcription start site region 97857
Tssr97858 10 62514391 to 62514400 9 - TSS region transcription start site region 97858
Tssr97859 10 62527387 to 62527400 13 - TSS region transcription start site region 97859
Tssr97860 10 62527413 to 62527435 22 - TSS region transcription start site region 97860
Tssr97861 10 62527438 to 62527459 21 - TSS region transcription start site region 97861
D10Mit29 10 62541920 to 62542084 164 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 29
Tssr93719 10 62543665 to 62543678 13 + TSS region transcription start site region 93719
Tssr93720 10 62543815 to 62543826 11 + TSS region transcription start site region 93720
Tssr3223 10 62553615 to 62553623 8 - TSS region transcription start site region 3223
Kif1bp 10 62558470 to 62578457 19987 - protein coding gene KIF1 binding protein
4933428P19Rik 10 62577694 to 62579069 1375 + antisense lncRNA gene RIKEN cDNA 4933428P19 gene
Cpgi1630 10 62577805 to 62578636 831 CpG island CpG island 1630
Tssr97862 10 62578197 to 62578229 32 - TSS region transcription start site region 97862
Tssr97863 10 62578387 to 62578450 63 - TSS region transcription start site region 97863
Tssr97864 10 62578458 to 62578463 5 - TSS region transcription start site region 97864
Ddx21 10 62580251 to 62602281 22030 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
Tssr93721 10 62598765 to 62598780 15 + TSS region transcription start site region 93721
Tssr93722 10 62598826 to 62598854 28 + TSS region transcription start site region 93722
Tssr97865 10 62599514 to 62599518 4 - TSS region transcription start site region 97865
Cpgi1631 10 62601918 to 62602883 965 CpG island CpG island 1631
Tssr97866 10 62602261 to 62602291 30 - TSS region transcription start site region 97866
Tssr93723 10 62602331 to 62602368 37 + TSS region transcription start site region 93723
Gm47257 10 62602350 to 62604128 1778 + bidirectional promoter lncRNA gene predicted gene, 47257
Tssr93724 10 62602369 to 62602392 23 + TSS region transcription start site region 93724
Ddx50 10 62615895 to 62651218 35323 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
Tssr97867 10 62616413 to 62616416 3 - TSS region transcription start site region 97867
Cpgi1632 10 62650571 to 62651913 1342 CpG island CpG island 1632
Tssr97868 10 62651170 to 62651192 22 - TSS region transcription start site region 97868
Tssr97869 10 62651194 to 62651234 40 - TSS region transcription start site region 97869
Tssr93725 10 62651666 to 62651677 11 + TSS region transcription start site region 93725
Tssr93726 10 62651687 to 62651706 19 + TSS region transcription start site region 93726
Tssr93727 10 62651712 to 62651726 14 + TSS region transcription start site region 93727
Stox1 10 62659043 to 62726099 67056 - protein coding gene storkhead box 1
Tssr97870 10 62664038 to 62664079 41 - TSS region transcription start site region 97870
Cpgi1633 10 62665078 to 62665308 230 CpG island CpG island 1633
Tssr97871 10 62665369 to 62665392 23 - TSS region transcription start site region 97871
Gm18514 10 62669803 to 62670238 435 + pseudogene predicted gene, 18514
Tssr93728 10 62672310 to 62672332 22 + TSS region transcription start site region 93728
Tssr93729 10 62678475 to 62678478 3 + TSS region transcription start site region 93729
Mir7215 10 62682508 to 62682558 50 + miRNA gene microRNA 7215
Tssr93730 10 62699375 to 62699377 2 + TSS region transcription start site region 93730
Gm47261 10 62702196 to 62702599 403 + pseudogene predicted gene, 47261
Cpgi1634 10 62725536 to 62726578 1042 CpG island CpG island 1634
Tssr97872 10 62726086 to 62726102 16 - TSS region transcription start site region 97872
Ccar1 10 62743928 to 62792286 48358 - protein coding gene cell division cycle and apoptosis regulator 1
Tssr97873 10 62753353 to 62753369 16 - TSS region transcription start site region 97873
Tssr97874 10 62756540 to 62756576 36 - TSS region transcription start site region 97874
Tssr93731 10 62761677 to 62761683 6 + TSS region transcription start site region 93731
Gm48145 10 62761751 to 62762079 328 + pseudogene predicted gene, 48145
Tssr97875 10 62764394 to 62764408 14 - TSS region transcription start site region 97875
Snord98 10 62765579 to 62765606 27 - snoRNA gene small nucleolar RNA, C/D box 98
Tssr97876 10 62777829 to 62777834 5 - TSS region transcription start site region 97876
Gm48146 10 62781757 to 62783187 1430 - unclassified gene predicted gene, 48146
Tssr97877 10 62785506 to 62785524 18 - TSS region transcription start site region 97877
Cpgi1635 10 62791591 to 62792625 1034 CpG island CpG island 1635
Tssr97878 10 62791972 to 62791987 15 - TSS region transcription start site region 97878
Tssr97879 10 62791988 to 62792023 35 - TSS region transcription start site region 97879
Tssr97880 10 62792243 to 62792290 47 - TSS region transcription start site region 97880
Tet1 10 62804570 to 62887581 83011 - protein coding gene tet methylcytosine dioxygenase 1
Tssr97881 10 62808358 to 62808382 24 - TSS region transcription start site region 97881
Cpgi1636 10 62812780 to 62813003 223 CpG island CpG island 1636