Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:62345624-63792964

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259 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hk1 10 62268855 to 62379908 111053 - protein coding gene hexokinase 1
Hk1os 10 62340607 to 62349866 9259 + antisense lncRNA gene hexokinase 1, opposite strand
Tssr97812 10 62362265 to 62362313 48 - TSS region transcription start site region 97812
Tssr93708 10 62362329 to 62362353 24 + TSS region transcription start site region 93708
Gm40675 10 62362337 to 62363611 1274 + lncRNA gene predicted gene, 40675
Tssr97813 10 62379901 to 62379917 16 - TSS region transcription start site region 97813
Tssr97814 10 62379919 to 62379930 11 - TSS region transcription start site region 97814
Hkdc1 10 62383137 to 62422464 39327 - protein coding gene hexokinase domain containing 1
n-TAagc6 10 62391124 to 62391196 72 - tRNA gene nuclear encoded tRNA alanine 6 (anticodon AGC)
Cpgi1626 10 62401646 to 62401931 285 CpG island CpG island 1626
Cpgi1627 10 62405152 to 62405609 457 CpG island CpG island 1627
Tssr97815 10 62422364 to 62422375 11 - TSS region transcription start site region 97815
Tssr97816 10 62422398 to 62422409 11 - TSS region transcription start site region 97816
Tssr97817 10 62422418 to 62422425 7 - TSS region transcription start site region 97817
Tssr97818 10 62422427 to 62422448 21 - TSS region transcription start site region 97818
Gm30322 10 62422506 to 62430006 7500 + lncRNA gene predicted gene, 30322
Supv3l1 10 62429209 to 62449738 20529 - protein coding gene suppressor of var1, 3-like 1 (S. cerevisiae)
Tssr93709 10 62432649 to 62432656 7 + TSS region transcription start site region 93709
Cpgi1628 10 62449213 to 62450386 1173 CpG island CpG island 1628
4930507D05Rik 10 62449489 to 62451322 1833 + unclassified gene RIKEN cDNA 4930507D05 gene
Tssr97819 10 62449679 to 62449733 54 - TSS region transcription start site region 97819
Tssr97820 10 62449738 to 62449757 19 - TSS region transcription start site region 97820
Vps26a 10 62455235 to 62486805 31570 - protein coding gene VPS26 retromer complex component A
Tssr97821 10 62455680 to 62455692 12 - TSS region transcription start site region 97821
Tssr97822 10 62456310 to 62456322 12 - TSS region transcription start site region 97822
Tssr97823 10 62468319 to 62468345 26 - TSS region transcription start site region 97823
Tssr97824 10 62477758 to 62477763 5 - TSS region transcription start site region 97824
Tssr97825 10 62477923 to 62477928 5 - TSS region transcription start site region 97825
Cpgi1629 10 62486145 to 62487297 1152 CpG island CpG island 1629
Tssr97826 10 62486555 to 62486566 11 - TSS region transcription start site region 97826
Tssr97827 10 62486575 to 62486604 29 - TSS region transcription start site region 97827
Tssr97828 10 62486683 to 62486771 88 - TSS region transcription start site region 97828
Tssr97829 10 62486772 to 62486784 12 - TSS region transcription start site region 97829
Srgn 10 62493833 to 62527451 33618 - protein coding gene serglycin
Tssr93710 10 62494582 to 62494617 35 + TSS region transcription start site region 93710
Tssr97830 10 62494728 to 62494750 22 - TSS region transcription start site region 97830
Tssr97831 10 62494771 to 62494783 12 - TSS region transcription start site region 97831
Tssr93711 10 62494779 to 62494813 34 + TSS region transcription start site region 93711
Tssr97832 10 62494795 to 62494806 11 - TSS region transcription start site region 97832
Tssr97833 10 62494824 to 62494836 12 - TSS region transcription start site region 97833
Tssr97834 10 62494839 to 62494863 24 - TSS region transcription start site region 97834
Tssr97835 10 62494873 to 62494884 11 - TSS region transcription start site region 97835
Tssr97836 10 62494893 to 62494898 5 - TSS region transcription start site region 97836
Tssr97837 10 62494934 to 62494961 27 - TSS region transcription start site region 97837
Tssr97838 10 62494969 to 62494981 12 - TSS region transcription start site region 97838
Tssr97839 10 62495023 to 62495027 4 - TSS region transcription start site region 97839
Tssr97840 10 62495096 to 62495110 14 - TSS region transcription start site region 97840
Tssr97841 10 62497270 to 62497274 4 - TSS region transcription start site region 97841
Tssr97842 10 62497833 to 62497853 20 - TSS region transcription start site region 97842
Tssr97843 10 62497857 to 62497873 16 - TSS region transcription start site region 97843
Tssr97844 10 62497907 to 62497931 24 - TSS region transcription start site region 97844
Tssr97845 10 62503937 to 62503952 15 - TSS region transcription start site region 97845
Tssr97846 10 62503954 to 62503965 11 - TSS region transcription start site region 97846
Tssr93712 10 62504101 to 62504108 7 + TSS region transcription start site region 93712
Tssr93713 10 62504128 to 62504140 12 + TSS region transcription start site region 93713
Tssr93714 10 62505857 to 62505860 3 + TSS region transcription start site region 93714
Tssr97847 10 62506282 to 62506295 13 - TSS region transcription start site region 97847
Tssr97848 10 62506297 to 62506309 12 - TSS region transcription start site region 97848
Tssr93715 10 62506564 to 62506593 29 + TSS region transcription start site region 93715
Tssr97849 10 62506905 to 62506910 5 - TSS region transcription start site region 97849
Tssr97850 10 62507216 to 62507257 41 - TSS region transcription start site region 97850
Tssr97851 10 62507737 to 62507764 27 - TSS region transcription start site region 97851
Tssr93716 10 62507901 to 62507914 13 + TSS region transcription start site region 93716
Tssr93717 10 62508098 to 62508117 19 + TSS region transcription start site region 93717
Tssr97852 10 62508137 to 62508170 33 - TSS region transcription start site region 97852
Tssr93718 10 62508183 to 62508193 10 + TSS region transcription start site region 93718
Tssr97853 10 62513476 to 62513499 23 - TSS region transcription start site region 97853
Tssr97854 10 62513523 to 62513527 4 - TSS region transcription start site region 97854
Tssr97855 10 62513539 to 62513549 10 - TSS region transcription start site region 97855
Tssr97856 10 62514358 to 62514370 12 - TSS region transcription start site region 97856
Tssr97857 10 62514373 to 62514384 11 - TSS region transcription start site region 97857
Tssr97858 10 62514391 to 62514400 9 - TSS region transcription start site region 97858
Tssr97859 10 62527387 to 62527400 13 - TSS region transcription start site region 97859
Tssr97860 10 62527413 to 62527435 22 - TSS region transcription start site region 97860
Tssr97861 10 62527438 to 62527459 21 - TSS region transcription start site region 97861
D10Mit29 10 62541920 to 62542084 164 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 29
Tssr93719 10 62543665 to 62543678 13 + TSS region transcription start site region 93719
Tssr93720 10 62543815 to 62543826 11 + TSS region transcription start site region 93720
Tssr3223 10 62553615 to 62553623 8 - TSS region transcription start site region 3223
Kif1bp 10 62558470 to 62578457 19987 - protein coding gene KIF1 binding protein
4933428P19Rik 10 62577694 to 62579069 1375 + antisense lncRNA gene RIKEN cDNA 4933428P19 gene
Cpgi1630 10 62577805 to 62578636 831 CpG island CpG island 1630
Tssr97862 10 62578197 to 62578229 32 - TSS region transcription start site region 97862
Tssr97863 10 62578387 to 62578450 63 - TSS region transcription start site region 97863
Tssr97864 10 62578458 to 62578463 5 - TSS region transcription start site region 97864
Ddx21 10 62580251 to 62602281 22030 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
Tssr93721 10 62598765 to 62598780 15 + TSS region transcription start site region 93721
Tssr93722 10 62598826 to 62598854 28 + TSS region transcription start site region 93722
Tssr97865 10 62599514 to 62599518 4 - TSS region transcription start site region 97865
Cpgi1631 10 62601918 to 62602883 965 CpG island CpG island 1631
Tssr97866 10 62602261 to 62602291 30 - TSS region transcription start site region 97866
Tssr93723 10 62602331 to 62602368 37 + TSS region transcription start site region 93723
Gm47257 10 62602350 to 62604128 1778 + bidirectional promoter lncRNA gene predicted gene, 47257
Tssr93724 10 62602369 to 62602392 23 + TSS region transcription start site region 93724
Ddx50 10 62615895 to 62651218 35323 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
Tssr97867 10 62616413 to 62616416 3 - TSS region transcription start site region 97867
Cpgi1632 10 62650571 to 62651913 1342 CpG island CpG island 1632
Tssr97868 10 62651170 to 62651192 22 - TSS region transcription start site region 97868
Tssr97869 10 62651194 to 62651234 40 - TSS region transcription start site region 97869
Tssr93725 10 62651666 to 62651677 11 + TSS region transcription start site region 93725
Tssr93726 10 62651687 to 62651706 19 + TSS region transcription start site region 93726
Tssr93727 10 62651712 to 62651726 14 + TSS region transcription start site region 93727
Stox1 10 62659043 to 62726099 67056 - protein coding gene storkhead box 1
Tssr97870 10 62664038 to 62664079 41 - TSS region transcription start site region 97870
Cpgi1633 10 62665078 to 62665308 230 CpG island CpG island 1633
Tssr97871 10 62665369 to 62665392 23 - TSS region transcription start site region 97871
Gm18514 10 62669803 to 62670238 435 + pseudogene predicted gene, 18514
Tssr93728 10 62672310 to 62672332 22 + TSS region transcription start site region 93728
Tssr93729 10 62678475 to 62678478 3 + TSS region transcription start site region 93729
Mir7215 10 62682508 to 62682558 50 + miRNA gene microRNA 7215
Tssr93730 10 62699375 to 62699377 2 + TSS region transcription start site region 93730
Gm47261 10 62702196 to 62702599 403 + pseudogene predicted gene, 47261
Cpgi1634 10 62725536 to 62726578 1042 CpG island CpG island 1634
Tssr97872 10 62726086 to 62726102 16 - TSS region transcription start site region 97872
Ccar1 10 62743928 to 62792286 48358 - protein coding gene cell division cycle and apoptosis regulator 1
Tssr97873 10 62753353 to 62753369 16 - TSS region transcription start site region 97873
Tssr97874 10 62756540 to 62756576 36 - TSS region transcription start site region 97874
Tssr93731 10 62761677 to 62761683 6 + TSS region transcription start site region 93731
Gm48145 10 62761751 to 62762079 328 + pseudogene predicted gene, 48145
Tssr97875 10 62764394 to 62764408 14 - TSS region transcription start site region 97875
Snord98 10 62765579 to 62765606 27 - snoRNA gene small nucleolar RNA, C/D box 98
Tssr97876 10 62777829 to 62777834 5 - TSS region transcription start site region 97876
Gm48146 10 62781757 to 62783187 1430 - unclassified gene predicted gene, 48146
Tssr97877 10 62785506 to 62785524 18 - TSS region transcription start site region 97877
Cpgi1635 10 62791591 to 62792625 1034 CpG island CpG island 1635
Tssr97878 10 62791972 to 62791987 15 - TSS region transcription start site region 97878
Tssr97879 10 62791988 to 62792023 35 - TSS region transcription start site region 97879
Tssr97880 10 62792243 to 62792290 47 - TSS region transcription start site region 97880
Tet1 10 62804570 to 62887581 83011 - protein coding gene tet methylcytosine dioxygenase 1
Tssr97881 10 62808358 to 62808382 24 - TSS region transcription start site region 97881
Cpgi1636 10 62812780 to 62813003 223 CpG island CpG island 1636
Tssr97882 10 62834965 to 62834976 11 - TSS region transcription start site region 97882
Tssr97883 10 62839878 to 62839908 30 - TSS region transcription start site region 97883
Gm48353 10 62858124 to 62859994 1870 - unclassified gene predicted gene, 48353
Tssr97884 10 62865242 to 62865277 35 - TSS region transcription start site region 97884
Tssr97885 10 62865279 to 62865290 11 - TSS region transcription start site region 97885
Tssr97886 10 62865299 to 62865328 29 - TSS region transcription start site region 97886
Tssr97887 10 62865331 to 62865345 14 - TSS region transcription start site region 97887
Tssr97888 10 62865438 to 62865471 33 - TSS region transcription start site region 97888
Cpgi1637 10 62865516 to 62865898 382 CpG island CpG island 1637
Tssr97889 10 62877058 to 62877065 7 - TSS region transcription start site region 97889
Tssr93732 10 62885646 to 62885672 26 + TSS region transcription start site region 93732
Cpgi1638 10 62886088 to 62887558 1470 CpG island CpG island 1638
Tssr97890 10 62887412 to 62887440 28 - TSS region transcription start site region 97890
Tssr97891 10 62887461 to 62887473 12 - TSS region transcription start site region 97891
Tssr93733 10 62892476 to 62892485 9 + TSS region transcription start site region 93733
Tssr97892 10 62892800 to 62892831 31 - TSS region transcription start site region 97892
Tssr97893 10 62892844 to 62892872 28 - TSS region transcription start site region 97893
Tssr93734 10 62893167 to 62893179 12 + TSS region transcription start site region 93734
Gm26479 10 62893409 to 62893514 105 - snRNA gene predicted gene, 26479
Tssr93735 10 62895756 to 62895776 20 + TSS region transcription start site region 93735
Gm22803 10 62919559 to 62919841 282 + unclassified non-coding RNA gene predicted gene, 22803
Cpgi1639 10 62919992 to 62921226 1234 CpG island CpG island 1639
Tssr93736 10 62920630 to 62920646 16 + TSS region transcription start site region 93736
Slc25a16 10 62920633 to 62946498 25865 + protein coding gene solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
Tssr93737 10 62920648 to 62920682 34 + TSS region transcription start site region 93737
Tssr93738 10 62920711 to 62920716 5 + TSS region transcription start site region 93738
Gm25862 10 62923396 to 62923524 128 - snoRNA gene predicted gene, 25862
Gm16128 10 62935750 to 62936323 573 + pseudogene predicted gene 16128
Cpgi1640 10 62946731 to 62947484 753 CpG island CpG island 1640
Tssr93739 10 62947011 to 62947073 62 + TSS region transcription start site region 93739
Dna2 10 62947026 to 62974185 27159 + protein coding gene DNA replication helicase/nuclease 2
Cpgi1641 10 62979975 to 62980914 939 CpG island CpG island 1641
Rufy2 10 62980223 to 63017210 36987 + protein coding gene RUN and FYVE domain-containing 2
Tssr93740 10 62980233 to 62980261 28 + TSS region transcription start site region 93740
Tssr93741 10 62980280 to 62980291 11 + TSS region transcription start site region 93741
Cpgi1642 10 62990823 to 62990990 167 CpG island CpG island 1642
Gm16135 10 62998779 to 62999689 910 + antisense lncRNA gene predicted gene 16135
Hnrnph3 10 63014664 to 63023932 9268 - protein coding gene heterogeneous nuclear ribonucleoprotein H3
Tssr97894 10 63017589 to 63017611 22 - TSS region transcription start site region 97894
Tssr97895 10 63018085 to 63018111 26 - TSS region transcription start site region 97895
Tssr97896 10 63019904 to 63019911 7 - TSS region transcription start site region 97896
Cpgi1643 10 63022758 to 63024444 1686 CpG island CpG island 1643
Tssr93742 10 63023333 to 63023352 19 + TSS region transcription start site region 93742
Tssr97897 10 63023734 to 63023741 7 - TSS region transcription start site region 97897
Tssr97898 10 63023762 to 63023765 3 - TSS region transcription start site region 97898
Tssr97899 10 63023776 to 63023784 8 - TSS region transcription start site region 97899
Tssr97900 10 63023806 to 63023824 18 - TSS region transcription start site region 97900
Tssr97901 10 63023860 to 63023871 11 - TSS region transcription start site region 97901
Tssr97902 10 63023881 to 63023907 26 - TSS region transcription start site region 97902
Tssr97903 10 63023913 to 63023918 5 - TSS region transcription start site region 97903
Pbld2 10 63024315 to 63058813 34498 + protein coding gene phenazine biosynthesis-like protein domain containing 2
Tssr93743 10 63039101 to 63039117 16 + TSS region transcription start site region 93743
Gm16143 10 63055603 to 63056819 1216 - antisense lncRNA gene predicted gene 16143
Tssr97904 10 63057444 to 63057459 15 - TSS region transcription start site region 97904
Tssr97905 10 63057472 to 63057490 18 - TSS region transcription start site region 97905
Pbld1 10 63060624 to 63077964 17340 + protein coding gene phenazine biosynthesis-like protein domain containing 1
Tssr93744 10 63060630 to 63060657 27 + TSS region transcription start site region 93744
Tssr93745 10 63060725 to 63060752 27 + TSS region transcription start site region 93745
Tssr93746 10 63061535 to 63061548 13 + TSS region transcription start site region 93746
Tssr93747 10 63061586 to 63061602 16 + TSS region transcription start site region 93747
Gm48072 10 63072052 to 63075060 3008 - antisense lncRNA gene predicted gene, 48072
Gm38063 10 63098349 to 63098690 341 + unclassified gene predicted gene, 38063
Atoh7 10 63099651 to 63101279 1628 + protein coding gene atonal bHLH transcription factor 7
Cpgi1644 10 63099698 to 63100893 1195 CpG island CpG island 1644
Tssr93748 10 63099782 to 63099792 10 + TSS region transcription start site region 93748
Mypn 10 63115795 to 63203952 88157 - protein coding gene myopalladin
Cpgi1645 10 63130896 to 63131166 270 CpG island CpG island 1645
Tssr93749 10 63182801 to 63182808 7 + TSS region transcription start site region 93749
Cpgi1646 10 63192448 to 63193204 756 CpG island CpG island 1646