Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:62296646-62506931

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hk1 10 62268855 to 62379908 111053 - protein coding gene hexokinase 1
Tssr93704 10 62300549 to 62300570 21 + TSS region transcription start site region 93704
Tssr97796 10 62327582 to 62327599 17 - TSS region transcription start site region 97796
Tssr97797 10 62327602 to 62327655 53 - TSS region transcription start site region 97797
Tssr97798 10 62327666 to 62327679 13 - TSS region transcription start site region 97798
Cpgi1624 10 62327681 to 62327952 271 CpG island CpG island 1624
Tssr97799 10 62327757 to 62327768 11 - TSS region transcription start site region 97799
Tssr97800 10 62327777 to 62327787 10 - TSS region transcription start site region 97800
Tssr97801 10 62337390 to 62337395 5 - TSS region transcription start site region 97801
Tssr93705 10 62338895 to 62338921 26 + TSS region transcription start site region 93705
Tssr3221 10 62339295 to 62339315 20 - TSS region transcription start site region 3221
Tssr3222 10 62339329 to 62339338 9 - TSS region transcription start site region 3222
Cpgi1625 10 62339524 to 62340746 1222 CpG island CpG island 1625
Tssr97802 10 62340110 to 62340121 11 - TSS region transcription start site region 97802
Tssr97803 10 62340134 to 62340154 20 - TSS region transcription start site region 97803
Tssr97804 10 62340157 to 62340181 24 - TSS region transcription start site region 97804
Tssr93706 10 62340228 to 62340242 14 + TSS region transcription start site region 93706
Tssr97805 10 62340514 to 62340549 35 - TSS region transcription start site region 97805
Hk1os 10 62340607 to 62349866 9259 + antisense lncRNA gene hexokinase 1, opposite strand
Tssr93707 10 62340619 to 62340684 65 + TSS region transcription start site region 93707
Tssr97806 10 62342633 to 62342642 9 - TSS region transcription start site region 97806
Tssr97807 10 62342644 to 62342660 16 - TSS region transcription start site region 97807
Tssr97808 10 62342663 to 62342672 9 - TSS region transcription start site region 97808
Tssr97809 10 62342674 to 62342718 44 - TSS region transcription start site region 97809
Tssr97810 10 62342726 to 62342733 7 - TSS region transcription start site region 97810
Tssr97811 10 62342736 to 62342751 15 - TSS region transcription start site region 97811
Tssr97812 10 62362265 to 62362313 48 - TSS region transcription start site region 97812
Tssr93708 10 62362329 to 62362353 24 + TSS region transcription start site region 93708
Gm40675 10 62362337 to 62363611 1274 + lncRNA gene predicted gene, 40675
Tssr97813 10 62379901 to 62379917 16 - TSS region transcription start site region 97813
Tssr97814 10 62379919 to 62379930 11 - TSS region transcription start site region 97814
Hkdc1 10 62383137 to 62422464 39327 - protein coding gene hexokinase domain containing 1
n-TAagc6 10 62391124 to 62391196 72 - tRNA gene nuclear encoded tRNA alanine 6 (anticodon AGC)
Cpgi1626 10 62401646 to 62401931 285 CpG island CpG island 1626
Cpgi1627 10 62405152 to 62405609 457 CpG island CpG island 1627
Tssr97815 10 62422364 to 62422375 11 - TSS region transcription start site region 97815
Tssr97816 10 62422398 to 62422409 11 - TSS region transcription start site region 97816
Tssr97817 10 62422418 to 62422425 7 - TSS region transcription start site region 97817
Tssr97818 10 62422427 to 62422448 21 - TSS region transcription start site region 97818
Gm30322 10 62422506 to 62430006 7500 + lncRNA gene predicted gene, 30322
Supv3l1 10 62429209 to 62449738 20529 - protein coding gene suppressor of var1, 3-like 1 (S. cerevisiae)
Tssr93709 10 62432649 to 62432656 7 + TSS region transcription start site region 93709
Cpgi1628 10 62449213 to 62450386 1173 CpG island CpG island 1628
4930507D05Rik 10 62449489 to 62451322 1833 + unclassified gene RIKEN cDNA 4930507D05 gene
Tssr97819 10 62449679 to 62449733 54 - TSS region transcription start site region 97819
Tssr97820 10 62449738 to 62449757 19 - TSS region transcription start site region 97820
Vps26a 10 62455235 to 62486805 31570 - protein coding gene VPS26 retromer complex component A
Tssr97821 10 62455680 to 62455692 12 - TSS region transcription start site region 97821
Tssr97822 10 62456310 to 62456322 12 - TSS region transcription start site region 97822
Tssr97823 10 62468319 to 62468345 26 - TSS region transcription start site region 97823
Tssr97824 10 62477758 to 62477763 5 - TSS region transcription start site region 97824
Tssr97825 10 62477923 to 62477928 5 - TSS region transcription start site region 97825
Cpgi1629 10 62486145 to 62487297 1152 CpG island CpG island 1629
Tssr97826 10 62486555 to 62486566 11 - TSS region transcription start site region 97826
Tssr97827 10 62486575 to 62486604 29 - TSS region transcription start site region 97827
Tssr97828 10 62486683 to 62486771 88 - TSS region transcription start site region 97828
Tssr97829 10 62486772 to 62486784 12 - TSS region transcription start site region 97829
Srgn 10 62493833 to 62527451 33618 - protein coding gene serglycin
Tssr93710 10 62494582 to 62494617 35 + TSS region transcription start site region 93710
Tssr97830 10 62494728 to 62494750 22 - TSS region transcription start site region 97830
Tssr97831 10 62494771 to 62494783 12 - TSS region transcription start site region 97831
Tssr93711 10 62494779 to 62494813 34 + TSS region transcription start site region 93711
Tssr97832 10 62494795 to 62494806 11 - TSS region transcription start site region 97832
Tssr97833 10 62494824 to 62494836 12 - TSS region transcription start site region 97833
Tssr97834 10 62494839 to 62494863 24 - TSS region transcription start site region 97834
Tssr97835 10 62494873 to 62494884 11 - TSS region transcription start site region 97835
Tssr97836 10 62494893 to 62494898 5 - TSS region transcription start site region 97836
Tssr97837 10 62494934 to 62494961 27 - TSS region transcription start site region 97837
Tssr97838 10 62494969 to 62494981 12 - TSS region transcription start site region 97838
Tssr97839 10 62495023 to 62495027 4 - TSS region transcription start site region 97839
Tssr97840 10 62495096 to 62495110 14 - TSS region transcription start site region 97840
Tssr97841 10 62497270 to 62497274 4 - TSS region transcription start site region 97841
Tssr97842 10 62497833 to 62497853 20 - TSS region transcription start site region 97842
Tssr97843 10 62497857 to 62497873 16 - TSS region transcription start site region 97843
Tssr97844 10 62497907 to 62497931 24 - TSS region transcription start site region 97844
Tssr97845 10 62503937 to 62503952 15 - TSS region transcription start site region 97845
Tssr97846 10 62503954 to 62503965 11 - TSS region transcription start site region 97846
Tssr93712 10 62504101 to 62504108 7 + TSS region transcription start site region 93712
Tssr93713 10 62504128 to 62504140 12 + TSS region transcription start site region 93713
Tssr93714 10 62505857 to 62505860 3 + TSS region transcription start site region 93714
Tssr97847 10 62506282 to 62506295 13 - TSS region transcription start site region 97847
Tssr97848 10 62506297 to 62506309 12 - TSS region transcription start site region 97848
Tssr93715 10 62506564 to 62506593 29 + TSS region transcription start site region 93715
Tssr97849 10 62506905 to 62506910 5 - TSS region transcription start site region 97849