Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:62227674-62457718

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tspan15 10 62185396 to 62231251 45855 - protein coding gene tetraspanin 15
Cpgi1623 10 62230634 to 62231655 1021 CpG island CpG island 1623
Tssr97794 10 62231208 to 62231232 24 - TSS region transcription start site region 97794
Tssr97795 10 62231249 to 62231252 3 - TSS region transcription start site region 97795
Tssr93698 10 62231419 to 62231424 5 + TSS region transcription start site region 93698
Tssr93699 10 62252325 to 62252357 32 + TSS region transcription start site region 93699
Tacr2 10 62252438 to 62265990 13552 + protein coding gene tachykinin receptor 2
Tssr93700 10 62252731 to 62252766 35 + TSS region transcription start site region 93700
Tssr93701 10 62253047 to 62253057 10 + TSS region transcription start site region 93701
Tssr93702 10 62253090 to 62253108 18 + TSS region transcription start site region 93702
Tssr93703 10 62253111 to 62253121 10 + TSS region transcription start site region 93703
Hk1 10 62268855 to 62379908 111053 - protein coding gene hexokinase 1
Tssr93704 10 62300549 to 62300570 21 + TSS region transcription start site region 93704
Tssr97796 10 62327582 to 62327599 17 - TSS region transcription start site region 97796
Tssr97797 10 62327602 to 62327655 53 - TSS region transcription start site region 97797
Tssr97798 10 62327666 to 62327679 13 - TSS region transcription start site region 97798
Cpgi1624 10 62327681 to 62327952 271 CpG island CpG island 1624
Tssr97799 10 62327757 to 62327768 11 - TSS region transcription start site region 97799
Tssr97800 10 62327777 to 62327787 10 - TSS region transcription start site region 97800
Tssr97801 10 62337390 to 62337395 5 - TSS region transcription start site region 97801
Tssr93705 10 62338895 to 62338921 26 + TSS region transcription start site region 93705
Tssr3221 10 62339295 to 62339315 20 - TSS region transcription start site region 3221
Tssr3222 10 62339329 to 62339338 9 - TSS region transcription start site region 3222
Cpgi1625 10 62339524 to 62340746 1222 CpG island CpG island 1625
Tssr97802 10 62340110 to 62340121 11 - TSS region transcription start site region 97802
Tssr97803 10 62340134 to 62340154 20 - TSS region transcription start site region 97803
Tssr97804 10 62340157 to 62340181 24 - TSS region transcription start site region 97804
Tssr93706 10 62340228 to 62340242 14 + TSS region transcription start site region 93706
Tssr97805 10 62340514 to 62340549 35 - TSS region transcription start site region 97805
Hk1os 10 62340607 to 62349866 9259 + antisense lncRNA gene hexokinase 1, opposite strand
Tssr93707 10 62340619 to 62340684 65 + TSS region transcription start site region 93707
Tssr97806 10 62342633 to 62342642 9 - TSS region transcription start site region 97806
Tssr97807 10 62342644 to 62342660 16 - TSS region transcription start site region 97807
Tssr97808 10 62342663 to 62342672 9 - TSS region transcription start site region 97808
Tssr97809 10 62342674 to 62342718 44 - TSS region transcription start site region 97809
Tssr97810 10 62342726 to 62342733 7 - TSS region transcription start site region 97810
Tssr97811 10 62342736 to 62342751 15 - TSS region transcription start site region 97811
Tssr97812 10 62362265 to 62362313 48 - TSS region transcription start site region 97812
Tssr93708 10 62362329 to 62362353 24 + TSS region transcription start site region 93708
Gm40675 10 62362337 to 62363611 1274 + lncRNA gene predicted gene, 40675
Tssr97813 10 62379901 to 62379917 16 - TSS region transcription start site region 97813
Tssr97814 10 62379919 to 62379930 11 - TSS region transcription start site region 97814
Hkdc1 10 62383137 to 62422464 39327 - protein coding gene hexokinase domain containing 1
n-TAagc6 10 62391124 to 62391196 72 - tRNA gene nuclear encoded tRNA alanine 6 (anticodon AGC)
Cpgi1626 10 62401646 to 62401931 285 CpG island CpG island 1626
Cpgi1627 10 62405152 to 62405609 457 CpG island CpG island 1627
Tssr97815 10 62422364 to 62422375 11 - TSS region transcription start site region 97815
Tssr97816 10 62422398 to 62422409 11 - TSS region transcription start site region 97816
Tssr97817 10 62422418 to 62422425 7 - TSS region transcription start site region 97817
Tssr97818 10 62422427 to 62422448 21 - TSS region transcription start site region 97818
Gm30322 10 62422506 to 62430006 7500 + lncRNA gene predicted gene, 30322
Supv3l1 10 62429209 to 62449738 20529 - protein coding gene suppressor of var1, 3-like 1 (S. cerevisiae)
Tssr93709 10 62432649 to 62432656 7 + TSS region transcription start site region 93709
Cpgi1628 10 62449213 to 62450386 1173 CpG island CpG island 1628
4930507D05Rik 10 62449489 to 62451322 1833 + unclassified gene RIKEN cDNA 4930507D05 gene
Tssr97819 10 62449679 to 62449733 54 - TSS region transcription start site region 97819
Tssr97820 10 62449738 to 62449757 19 - TSS region transcription start site region 97820
Vps26a 10 62455235 to 62486805 31570 - protein coding gene VPS26 retromer complex component A
Tssr97821 10 62455680 to 62455692 12 - TSS region transcription start site region 97821
Tssr97822 10 62456310 to 62456322 12 - TSS region transcription start site region 97822