Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:61856310-63056322

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262 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col13a1 10 61838236 to 61979108 140872 - protein coding gene collagen, type XIII, alpha 1
Gm40674 10 61844488 to 61874240 29752 + lncRNA gene predicted gene, 40674
Tssr97781 10 61874865 to 61874879 14 - TSS region transcription start site region 97781
Tssr3219 10 61881955 to 61881956 1 - TSS region transcription start site region 3219
Gm30121 10 61916100 to 61932580 16480 + lncRNA gene predicted gene, 30121
8030450C14Rik 10 61931536 to 61932323 787 unclassified gene RIKEN cDNA 8030450C14 gene
Tssr93686 10 61959601 to 61959608 7 + TSS region transcription start site region 93686
Gm5750 10 61959624 to 61960424 800 + pseudogene predicted gene 5750
Cpgi1618 10 61977659 to 61979619 1960 CpG island CpG island 1618
Tssr97782 10 61979076 to 61979108 32 - TSS region transcription start site region 97782
Tssr97783 10 61979113 to 61979136 23 - TSS region transcription start site region 97783
Tssr97784 10 61979144 to 61979161 17 - TSS region transcription start site region 97784
Gm47919 10 62023404 to 62025615 2211 + unclassified gene predicted gene, 47919
Tssr3220 10 62055382 to 62055387 5 + TSS region transcription start site region 3220
Tssr93687 10 62066615 to 62066639 24 + TSS region transcription start site region 93687
D10Mit149 10 62067128 to 62067270 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 149
Tssr93688 10 62071014 to 62071020 6 + TSS region transcription start site region 93688
Gm5424 10 62071123 to 62072362 1239 + pseudogene predicted gene 5424
Tssr93689 10 62071267 to 62071293 26 + TSS region transcription start site region 93689
Tssr93690 10 62071451 to 62071460 9 + TSS region transcription start site region 93690
Tssr93691 10 62071507 to 62071535 28 + TSS region transcription start site region 93691
Tssr93692 10 62071589 to 62071608 19 + TSS region transcription start site region 93692
Tssr97785 10 62071620 to 62071668 48 - TSS region transcription start site region 97785
Tssr93693 10 62071659 to 62071686 27 + TSS region transcription start site region 93693
Tssr93694 10 62071693 to 62071717 24 + TSS region transcription start site region 93694
Tssr97786 10 62071819 to 62071825 6 - TSS region transcription start site region 97786
Tssr97787 10 62071896 to 62071916 20 - TSS region transcription start site region 97787
Tssr93695 10 62072057 to 62072088 31 + TSS region transcription start site region 93695
Tssr93696 10 62072211 to 62072233 22 + TSS region transcription start site region 93696
Fam241b 10 62107656 to 62111074 3418 - protein coding gene family with sequence similarity 241, member B
Cpgi1619 10 62110450 to 62111261 811 CpG island CpG island 1619
Tssr97788 10 62110976 to 62111060 84 - TSS region transcription start site region 97788
Tssr97789 10 62111061 to 62111072 11 - TSS region transcription start site region 97789
Cpgi1620 10 62127886 to 62128037 151 CpG island CpG island 1620
Cpgi1621 10 62128598 to 62129066 468 CpG island CpG island 1621
Cpgi1622 10 62132764 to 62134121 1357 CpG island CpG island 1622
Tssr93697 10 62133082 to 62133098 16 + TSS region transcription start site region 93697
Neurog3 10 62133090 to 62134763 1673 + protein coding gene neurogenin 3
Tssr97790 10 62143917 to 62143924 7 - TSS region transcription start site region 97790
Tspan15 10 62185396 to 62231251 45855 - protein coding gene tetraspanin 15
Tssr97791 10 62187486 to 62187491 5 - TSS region transcription start site region 97791
Tssr97792 10 62190860 to 62190873 13 - TSS region transcription start site region 97792
Mir7662 10 62194167 to 62194227 60 - miRNA gene microRNA 7662
Tssr97793 10 62194199 to 62194211 12 - TSS region transcription start site region 97793
Cpgi1623 10 62230634 to 62231655 1021 CpG island CpG island 1623
Tssr97794 10 62231208 to 62231232 24 - TSS region transcription start site region 97794
Tssr97795 10 62231249 to 62231252 3 - TSS region transcription start site region 97795
Tssr93698 10 62231419 to 62231424 5 + TSS region transcription start site region 93698
Tssr93699 10 62252325 to 62252357 32 + TSS region transcription start site region 93699
Tacr2 10 62252438 to 62265990 13552 + protein coding gene tachykinin receptor 2
Tssr93700 10 62252731 to 62252766 35 + TSS region transcription start site region 93700
Tssr93701 10 62253047 to 62253057 10 + TSS region transcription start site region 93701
Tssr93702 10 62253090 to 62253108 18 + TSS region transcription start site region 93702
Tssr93703 10 62253111 to 62253121 10 + TSS region transcription start site region 93703
Hk1 10 62268855 to 62379908 111053 - protein coding gene hexokinase 1
Tssr93704 10 62300549 to 62300570 21 + TSS region transcription start site region 93704
Tssr97796 10 62327582 to 62327599 17 - TSS region transcription start site region 97796
Tssr97797 10 62327602 to 62327655 53 - TSS region transcription start site region 97797
Tssr97798 10 62327666 to 62327679 13 - TSS region transcription start site region 97798
Cpgi1624 10 62327681 to 62327952 271 CpG island CpG island 1624
Tssr97799 10 62327757 to 62327768 11 - TSS region transcription start site region 97799
Tssr97800 10 62327777 to 62327787 10 - TSS region transcription start site region 97800
Tssr97801 10 62337390 to 62337395 5 - TSS region transcription start site region 97801
Tssr93705 10 62338895 to 62338921 26 + TSS region transcription start site region 93705
Tssr3221 10 62339295 to 62339315 20 - TSS region transcription start site region 3221
Tssr3222 10 62339329 to 62339338 9 - TSS region transcription start site region 3222
Cpgi1625 10 62339524 to 62340746 1222 CpG island CpG island 1625
Tssr97802 10 62340110 to 62340121 11 - TSS region transcription start site region 97802
Tssr97803 10 62340134 to 62340154 20 - TSS region transcription start site region 97803
Tssr97804 10 62340157 to 62340181 24 - TSS region transcription start site region 97804
Tssr93706 10 62340228 to 62340242 14 + TSS region transcription start site region 93706
Tssr97805 10 62340514 to 62340549 35 - TSS region transcription start site region 97805
Hk1os 10 62340607 to 62349866 9259 + antisense lncRNA gene hexokinase 1, opposite strand
Tssr93707 10 62340619 to 62340684 65 + TSS region transcription start site region 93707
Tssr97806 10 62342633 to 62342642 9 - TSS region transcription start site region 97806
Tssr97807 10 62342644 to 62342660 16 - TSS region transcription start site region 97807
Tssr97808 10 62342663 to 62342672 9 - TSS region transcription start site region 97808
Tssr97809 10 62342674 to 62342718 44 - TSS region transcription start site region 97809
Tssr97810 10 62342726 to 62342733 7 - TSS region transcription start site region 97810
Tssr97811 10 62342736 to 62342751 15 - TSS region transcription start site region 97811
Tssr97812 10 62362265 to 62362313 48 - TSS region transcription start site region 97812
Tssr93708 10 62362329 to 62362353 24 + TSS region transcription start site region 93708
Gm40675 10 62362337 to 62363611 1274 + lncRNA gene predicted gene, 40675
Tssr97813 10 62379901 to 62379917 16 - TSS region transcription start site region 97813
Tssr97814 10 62379919 to 62379930 11 - TSS region transcription start site region 97814
Hkdc1 10 62383137 to 62422464 39327 - protein coding gene hexokinase domain containing 1
n-TAagc6 10 62391124 to 62391196 72 - tRNA gene nuclear encoded tRNA alanine 6 (anticodon AGC)
Cpgi1626 10 62401646 to 62401931 285 CpG island CpG island 1626
Cpgi1627 10 62405152 to 62405609 457 CpG island CpG island 1627
Tssr97815 10 62422364 to 62422375 11 - TSS region transcription start site region 97815
Tssr97816 10 62422398 to 62422409 11 - TSS region transcription start site region 97816
Tssr97817 10 62422418 to 62422425 7 - TSS region transcription start site region 97817
Tssr97818 10 62422427 to 62422448 21 - TSS region transcription start site region 97818
Gm30322 10 62422506 to 62430006 7500 + lncRNA gene predicted gene, 30322
Supv3l1 10 62429209 to 62449738 20529 - protein coding gene suppressor of var1, 3-like 1 (S. cerevisiae)
Tssr93709 10 62432649 to 62432656 7 + TSS region transcription start site region 93709
Cpgi1628 10 62449213 to 62450386 1173 CpG island CpG island 1628
4930507D05Rik 10 62449489 to 62451322 1833 + unclassified gene RIKEN cDNA 4930507D05 gene
Tssr97819 10 62449679 to 62449733 54 - TSS region transcription start site region 97819
Tssr97820 10 62449738 to 62449757 19 - TSS region transcription start site region 97820
Vps26a 10 62455235 to 62486805 31570 - protein coding gene VPS26 retromer complex component A
Tssr97821 10 62455680 to 62455692 12 - TSS region transcription start site region 97821
Tssr97822 10 62456310 to 62456322 12 - TSS region transcription start site region 97822
Tssr97823 10 62468319 to 62468345 26 - TSS region transcription start site region 97823
Tssr97824 10 62477758 to 62477763 5 - TSS region transcription start site region 97824
Tssr97825 10 62477923 to 62477928 5 - TSS region transcription start site region 97825
Cpgi1629 10 62486145 to 62487297 1152 CpG island CpG island 1629
Tssr97826 10 62486555 to 62486566 11 - TSS region transcription start site region 97826
Tssr97827 10 62486575 to 62486604 29 - TSS region transcription start site region 97827
Tssr97828 10 62486683 to 62486771 88 - TSS region transcription start site region 97828
Tssr97829 10 62486772 to 62486784 12 - TSS region transcription start site region 97829
Srgn 10 62493833 to 62527451 33618 - protein coding gene serglycin
Tssr93710 10 62494582 to 62494617 35 + TSS region transcription start site region 93710
Tssr97830 10 62494728 to 62494750 22 - TSS region transcription start site region 97830
Tssr97831 10 62494771 to 62494783 12 - TSS region transcription start site region 97831
Tssr93711 10 62494779 to 62494813 34 + TSS region transcription start site region 93711
Tssr97832 10 62494795 to 62494806 11 - TSS region transcription start site region 97832
Tssr97833 10 62494824 to 62494836 12 - TSS region transcription start site region 97833
Tssr97834 10 62494839 to 62494863 24 - TSS region transcription start site region 97834
Tssr97835 10 62494873 to 62494884 11 - TSS region transcription start site region 97835
Tssr97836 10 62494893 to 62494898 5 - TSS region transcription start site region 97836
Tssr97837 10 62494934 to 62494961 27 - TSS region transcription start site region 97837
Tssr97838 10 62494969 to 62494981 12 - TSS region transcription start site region 97838
Tssr97839 10 62495023 to 62495027 4 - TSS region transcription start site region 97839
Tssr97840 10 62495096 to 62495110 14 - TSS region transcription start site region 97840
Tssr97841 10 62497270 to 62497274 4 - TSS region transcription start site region 97841
Tssr97842 10 62497833 to 62497853 20 - TSS region transcription start site region 97842
Tssr97843 10 62497857 to 62497873 16 - TSS region transcription start site region 97843
Tssr97844 10 62497907 to 62497931 24 - TSS region transcription start site region 97844
Tssr97845 10 62503937 to 62503952 15 - TSS region transcription start site region 97845
Tssr97846 10 62503954 to 62503965 11 - TSS region transcription start site region 97846
Tssr93712 10 62504101 to 62504108 7 + TSS region transcription start site region 93712
Tssr93713 10 62504128 to 62504140 12 + TSS region transcription start site region 93713
Tssr93714 10 62505857 to 62505860 3 + TSS region transcription start site region 93714
Tssr97847 10 62506282 to 62506295 13 - TSS region transcription start site region 97847
Tssr97848 10 62506297 to 62506309 12 - TSS region transcription start site region 97848
Tssr93715 10 62506564 to 62506593 29 + TSS region transcription start site region 93715
Tssr97849 10 62506905 to 62506910 5 - TSS region transcription start site region 97849
Tssr97850 10 62507216 to 62507257 41 - TSS region transcription start site region 97850
Tssr97851 10 62507737 to 62507764 27 - TSS region transcription start site region 97851
Tssr93716 10 62507901 to 62507914 13 + TSS region transcription start site region 93716
Tssr93717 10 62508098 to 62508117 19 + TSS region transcription start site region 93717
Tssr97852 10 62508137 to 62508170 33 - TSS region transcription start site region 97852
Tssr93718 10 62508183 to 62508193 10 + TSS region transcription start site region 93718
Tssr97853 10 62513476 to 62513499 23 - TSS region transcription start site region 97853
Tssr97854 10 62513523 to 62513527 4 - TSS region transcription start site region 97854
Tssr97855 10 62513539 to 62513549 10 - TSS region transcription start site region 97855
Tssr97856 10 62514358 to 62514370 12 - TSS region transcription start site region 97856
Tssr97857 10 62514373 to 62514384 11 - TSS region transcription start site region 97857
Tssr97858 10 62514391 to 62514400 9 - TSS region transcription start site region 97858
Tssr97859 10 62527387 to 62527400 13 - TSS region transcription start site region 97859
Tssr97860 10 62527413 to 62527435 22 - TSS region transcription start site region 97860
Tssr97861 10 62527438 to 62527459 21 - TSS region transcription start site region 97861
D10Mit29 10 62541920 to 62542084 164 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 29
Tssr93719 10 62543665 to 62543678 13 + TSS region transcription start site region 93719
Tssr93720 10 62543815 to 62543826 11 + TSS region transcription start site region 93720
Tssr3223 10 62553615 to 62553623 8 - TSS region transcription start site region 3223
Kif1bp 10 62558470 to 62578457 19987 - protein coding gene KIF1 binding protein
4933428P19Rik 10 62577694 to 62579069 1375 + antisense lncRNA gene RIKEN cDNA 4933428P19 gene
Cpgi1630 10 62577805 to 62578636 831 CpG island CpG island 1630
Tssr97862 10 62578197 to 62578229 32 - TSS region transcription start site region 97862
Tssr97863 10 62578387 to 62578450 63 - TSS region transcription start site region 97863
Tssr97864 10 62578458 to 62578463 5 - TSS region transcription start site region 97864
Ddx21 10 62580251 to 62602281 22030 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
Tssr93721 10 62598765 to 62598780 15 + TSS region transcription start site region 93721
Tssr93722 10 62598826 to 62598854 28 + TSS region transcription start site region 93722
Tssr97865 10 62599514 to 62599518 4 - TSS region transcription start site region 97865
Cpgi1631 10 62601918 to 62602883 965 CpG island CpG island 1631
Tssr97866 10 62602261 to 62602291 30 - TSS region transcription start site region 97866
Tssr93723 10 62602331 to 62602368 37 + TSS region transcription start site region 93723
Gm47257 10 62602350 to 62604128 1778 + bidirectional promoter lncRNA gene predicted gene, 47257
Tssr93724 10 62602369 to 62602392 23 + TSS region transcription start site region 93724
Ddx50 10 62615895 to 62651218 35323 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
Tssr97867 10 62616413 to 62616416 3 - TSS region transcription start site region 97867
Cpgi1632 10 62650571 to 62651913 1342 CpG island CpG island 1632
Tssr97868 10 62651170 to 62651192 22 - TSS region transcription start site region 97868
Tssr97869 10 62651194 to 62651234 40 - TSS region transcription start site region 97869
Tssr93725 10 62651666 to 62651677 11 + TSS region transcription start site region 93725
Tssr93726 10 62651687 to 62651706 19 + TSS region transcription start site region 93726
Tssr93727 10 62651712 to 62651726 14 + TSS region transcription start site region 93727
Stox1 10 62659043 to 62726099 67056 - protein coding gene storkhead box 1
Tssr97870 10 62664038 to 62664079 41 - TSS region transcription start site region 97870
Cpgi1633 10 62665078 to 62665308 230 CpG island CpG island 1633
Tssr97871 10 62665369 to 62665392 23 - TSS region transcription start site region 97871
Gm18514 10 62669803 to 62670238 435 + pseudogene predicted gene, 18514
Tssr93728 10 62672310 to 62672332 22 + TSS region transcription start site region 93728
Tssr93729 10 62678475 to 62678478 3 + TSS region transcription start site region 93729
Mir7215 10 62682508 to 62682558 50 + miRNA gene microRNA 7215
Tssr93730 10 62699375 to 62699377 2 + TSS region transcription start site region 93730
Gm47261 10 62702196 to 62702599 403 + pseudogene predicted gene, 47261
Cpgi1634 10 62725536 to 62726578 1042 CpG island CpG island 1634
Tssr97872 10 62726086 to 62726102 16 - TSS region transcription start site region 97872
Ccar1 10 62743928 to 62792286 48358 - protein coding gene cell division cycle and apoptosis regulator 1
Tssr97873 10 62753353 to 62753369 16 - TSS region transcription start site region 97873
Tssr97874 10 62756540 to 62756576 36 - TSS region transcription start site region 97874
Tssr93731 10 62761677 to 62761683 6 + TSS region transcription start site region 93731
Gm48145 10 62761751 to 62762079 328 + pseudogene predicted gene, 48145
Tssr97875 10 62764394 to 62764408 14 - TSS region transcription start site region 97875
Snord98 10 62765579 to 62765606 27 - snoRNA gene small nucleolar RNA, C/D box 98
Tssr97876 10 62777829 to 62777834 5 - TSS region transcription start site region 97876