Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:61339624-62580424

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254 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pald1 10 61319656 to 61383530 63874 - protein coding gene phosphatase domain containing, paladin 1
Tssr3215 10 61352006 to 61352008 2 + TSS region transcription start site region 3215
Gm48077 10 61359666 to 61361407 1741 + unclassified gene predicted gene, 48077
Gm48074 10 61379414 to 61381048 1634 - unclassified gene predicted gene, 48074
Cpgi1605 10 61382842 to 61383823 981 CpG island CpG island 1605
Tssr97759 10 61383332 to 61383372 40 - TSS region transcription start site region 97759
Tssr97760 10 61383374 to 61383391 17 - TSS region transcription start site region 97760
Tssr3216 10 61383450 to 61383502 52 - TSS region transcription start site region 3216
Tssr97761 10 61415607 to 61415632 25 - TSS region transcription start site region 97761
Tssr93663 10 61416279 to 61416300 21 + TSS region transcription start site region 93663
Tssr93664 10 61416530 to 61416545 15 + TSS region transcription start site region 93664
Tssr97762 10 61416700 to 61416707 7 - TSS region transcription start site region 97762
Nodal 10 61417972 to 61425337 7365 + protein coding gene nodal
Cpgi1606 10 61418208 to 61419408 1200 CpG island CpG island 1606
Tssr93665 10 61418283 to 61418289 6 + TSS region transcription start site region 93665
D10Mit112.1 10 61424705 to 61424899 194 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112.1
D10Mit112 10 61424897 to 61425027 130 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112
D10Mit112.2 10 61425078 to 61425193 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112.2
Eif4ebp2 10 61428491 to 61452661 24170 - protein coding gene eukaryotic translation initiation factor 4E binding protein 2
Tssr97763 10 61432711 to 61432746 35 - TSS region transcription start site region 97763
Tssr97764 10 61432768 to 61432821 53 - TSS region transcription start site region 97764
Tssr97765 10 61432933 to 61432948 15 - TSS region transcription start site region 97765
Tssr97766 10 61433215 to 61433249 34 - TSS region transcription start site region 97766
Tssr97767 10 61435036 to 61435065 29 - TSS region transcription start site region 97767
A130019P10Rik 10 61440942 to 61442412 1470 unclassified gene RIKEN cDNA A130019P10 gene
Gm48086 10 61446902 to 61450717 3815 - sense intronic lncRNA gene predicted gene, 48086
Cpgi1607 10 61451959 to 61453093 1134 CpG island CpG island 1607
Tssr97768 10 61452418 to 61452434 16 - TSS region transcription start site region 97768
Tssr97769 10 61452772 to 61452813 41 - TSS region transcription start site region 97769
D830039M14Rik 10 61473576 to 61476937 3361 - antisense lncRNA gene RIKEN cDNA D830039M14 gene
Cpgi1608 10 61475327 to 61476756 1429 CpG island CpG island 1608
Tssr93666 10 61475782 to 61475834 52 + TSS region transcription start site region 93666
Lrrc20 10 61475801 to 61582791 106990 + protein coding gene leucine rich repeat containing 20
Tssr97770 10 61476675 to 61476690 15 - TSS region transcription start site region 97770
Tssr93667 10 61482132 to 61482140 8 + TSS region transcription start site region 93667
Tssr93668 10 61482272 to 61482285 13 + TSS region transcription start site region 93668
Gm47595 10 61494917 to 61496290 1373 - antisense lncRNA gene predicted gene, 47595
Gm47593 10 61496600 to 61499601 3001 - antisense lncRNA gene predicted gene, 47593
Gm17829 10 61510242 to 61510585 343 - pseudogene predicted gene, 17829
Gm47594 10 61570911 to 61575064 4153 + unclassified gene predicted gene, 47594
Gm28447 10 61585393 to 61611074 25681 - unclassified non-coding RNA gene predicted gene 28447
4930516E23Rik 10 61591240 to 61592216 976 unclassified gene RIKEN cDNA 4930516E23 gene
Cpgi1609 10 61594923 to 61595543 620 CpG island CpG island 1609
Tssr93669 10 61595293 to 61595297 4 + TSS region transcription start site region 93669
Npffr1 10 61595492 to 61628565 33073 + protein coding gene neuropeptide FF receptor 1
Cpgi1610 10 61613920 to 61614329 409 CpG island CpG island 1610
Cpgi1611 10 61625223 to 61626361 1138 CpG island CpG island 1611
Cpgi1612 10 61648337 to 61649343 1006 CpG island CpG island 1612
Tssr97771 10 61648458 to 61648504 46 - TSS region transcription start site region 97771
Tssr93670 10 61648560 to 61648578 18 + TSS region transcription start site region 93670
Tssr93671 10 61648587 to 61648636 49 + TSS region transcription start site region 93671
Ppa1 10 61648621 to 61674165 25544 + protein coding gene pyrophosphatase (inorganic) 1
Tssr93672 10 61648642 to 61648662 20 + TSS region transcription start site region 93672
Tssr93673 10 61648673 to 61648686 13 + TSS region transcription start site region 93673
1700022H01Rik 10 61674789 to 61680255 5466 - bidirectional promoter lncRNA gene RIKEN cDNA 1700022H01 gene
Cpgi1613 10 61679989 to 61680888 899 CpG island CpG island 1613
Tssr97772 10 61680040 to 61680064 24 - TSS region transcription start site region 97772
Tssr97773 10 61680247 to 61680258 11 - TSS region transcription start site region 97773
Tssr97774 10 61680259 to 61680276 17 - TSS region transcription start site region 97774
Tssr97775 10 61680280 to 61680291 11 - TSS region transcription start site region 97775
Tssr93674 10 61680302 to 61680361 59 + TSS region transcription start site region 93674
Sar1a 10 61680304 to 61693297 12993 + protein coding gene secretion associated Ras related GTPase 1A
Tssr93675 10 61689627 to 61689664 37 + TSS region transcription start site region 93675
Cpgi1614 10 61695127 to 61697118 1991 CpG island CpG island 1614
Tssr93676 10 61695503 to 61695576 73 + TSS region transcription start site region 93676
Tysnd1 10 61695514 to 61702773 7259 + protein coding gene trypsin domain containing 1
Cpgi1615 10 61715109 to 61715587 478 CpG island CpG island 1615
Aifm2 10 61715263 to 61739260 23997 + protein coding gene apoptosis-inducing factor, mitochondrion-associated 2
Tssr93677 10 61715280 to 61715328 48 + TSS region transcription start site region 93677
Tssr93678 10 61720592 to 61720621 29 + TSS region transcription start site region 93678
Tssr93679 10 61726147 to 61726159 12 + TSS region transcription start site region 93679
Tssr93680 10 61726181 to 61726188 7 + TSS region transcription start site region 93680
Tssr93681 10 61733139 to 61733157 18 + TSS region transcription start site region 93681
H2afy2 10 61738640 to 61784103 45463 - protein coding gene H2A histone family, member Y2
Cpgi1616 10 61753108 to 61753529 421 CpG island CpG island 1616
Mir5108 10 61774737 to 61774821 84 + miRNA gene microRNA 5108
Gm2137 10 61782027 to 61784552 2525 + protein coding gene predicted gene 2137
Cpgi1617 10 61782726 to 61784442 1716 CpG island CpG island 1617
Tssr93682 10 61782950 to 61782973 23 + TSS region transcription start site region 93682
Tssr93683 10 61783247 to 61783277 30 + TSS region transcription start site region 93683
Tssr3217 10 61783827 to 61783841 14 - TSS region transcription start site region 3217
Tssr97776 10 61783921 to 61783959 38 - TSS region transcription start site region 97776
Tssr97777 10 61783961 to 61783974 13 - TSS region transcription start site region 97777
Tssr97778 10 61784014 to 61784017 3 - TSS region transcription start site region 97778
Tssr97779 10 61784334 to 61784350 16 - TSS region transcription start site region 97779
Tssr97780 10 61784461 to 61784463 2 - TSS region transcription start site region 97780
Tssr3218 10 61784580 to 61784601 21 - TSS region transcription start site region 3218
D10Mit196 10 61787202 to 61787404 202 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 196
Col13a1 10 61838236 to 61979108 140872 - protein coding gene collagen, type XIII, alpha 1
Gm40674 10 61844488 to 61874240 29752 + lncRNA gene predicted gene, 40674
Tssr93684 10 61845711 to 61845732 21 + TSS region transcription start site region 93684
Tssr93685 10 61845754 to 61845764 10 + TSS region transcription start site region 93685
Tssr97781 10 61874865 to 61874879 14 - TSS region transcription start site region 97781
Tssr3219 10 61881955 to 61881956 1 - TSS region transcription start site region 3219
Gm30121 10 61916100 to 61932580 16480 + lncRNA gene predicted gene, 30121
8030450C14Rik 10 61931536 to 61932323 787 unclassified gene RIKEN cDNA 8030450C14 gene
Tssr93686 10 61959601 to 61959608 7 + TSS region transcription start site region 93686
Gm5750 10 61959624 to 61960424 800 + pseudogene predicted gene 5750
Cpgi1618 10 61977659 to 61979619 1960 CpG island CpG island 1618
Tssr97782 10 61979076 to 61979108 32 - TSS region transcription start site region 97782
Tssr97783 10 61979113 to 61979136 23 - TSS region transcription start site region 97783
Tssr97784 10 61979144 to 61979161 17 - TSS region transcription start site region 97784
Gm47919 10 62023404 to 62025615 2211 + unclassified gene predicted gene, 47919
Tssr3220 10 62055382 to 62055387 5 + TSS region transcription start site region 3220
Tssr93687 10 62066615 to 62066639 24 + TSS region transcription start site region 93687
D10Mit149 10 62067128 to 62067270 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 149
Tssr93688 10 62071014 to 62071020 6 + TSS region transcription start site region 93688
Gm5424 10 62071123 to 62072362 1239 + pseudogene predicted gene 5424
Tssr93689 10 62071267 to 62071293 26 + TSS region transcription start site region 93689
Tssr93690 10 62071451 to 62071460 9 + TSS region transcription start site region 93690
Tssr93691 10 62071507 to 62071535 28 + TSS region transcription start site region 93691
Tssr93692 10 62071589 to 62071608 19 + TSS region transcription start site region 93692
Tssr97785 10 62071620 to 62071668 48 - TSS region transcription start site region 97785
Tssr93693 10 62071659 to 62071686 27 + TSS region transcription start site region 93693
Tssr93694 10 62071693 to 62071717 24 + TSS region transcription start site region 93694
Tssr97786 10 62071819 to 62071825 6 - TSS region transcription start site region 97786
Tssr97787 10 62071896 to 62071916 20 - TSS region transcription start site region 97787
Tssr93695 10 62072057 to 62072088 31 + TSS region transcription start site region 93695
Tssr93696 10 62072211 to 62072233 22 + TSS region transcription start site region 93696
Fam241b 10 62107656 to 62111074 3418 - protein coding gene family with sequence similarity 241, member B
Cpgi1619 10 62110450 to 62111261 811 CpG island CpG island 1619
Tssr97788 10 62110976 to 62111060 84 - TSS region transcription start site region 97788
Tssr97789 10 62111061 to 62111072 11 - TSS region transcription start site region 97789
Cpgi1620 10 62127886 to 62128037 151 CpG island CpG island 1620
Cpgi1621 10 62128598 to 62129066 468 CpG island CpG island 1621
Cpgi1622 10 62132764 to 62134121 1357 CpG island CpG island 1622
Tssr93697 10 62133082 to 62133098 16 + TSS region transcription start site region 93697
Neurog3 10 62133090 to 62134763 1673 + protein coding gene neurogenin 3
Tssr97790 10 62143917 to 62143924 7 - TSS region transcription start site region 97790
Tspan15 10 62185396 to 62231251 45855 - protein coding gene tetraspanin 15
Tssr97791 10 62187486 to 62187491 5 - TSS region transcription start site region 97791
Tssr97792 10 62190860 to 62190873 13 - TSS region transcription start site region 97792
Mir7662 10 62194167 to 62194227 60 - miRNA gene microRNA 7662
Tssr97793 10 62194199 to 62194211 12 - TSS region transcription start site region 97793
Cpgi1623 10 62230634 to 62231655 1021 CpG island CpG island 1623
Tssr97794 10 62231208 to 62231232 24 - TSS region transcription start site region 97794
Tssr97795 10 62231249 to 62231252 3 - TSS region transcription start site region 97795
Tssr93698 10 62231419 to 62231424 5 + TSS region transcription start site region 93698
Tssr93699 10 62252325 to 62252357 32 + TSS region transcription start site region 93699
Tacr2 10 62252438 to 62265990 13552 + protein coding gene tachykinin receptor 2
Tssr93700 10 62252731 to 62252766 35 + TSS region transcription start site region 93700
Tssr93701 10 62253047 to 62253057 10 + TSS region transcription start site region 93701
Tssr93702 10 62253090 to 62253108 18 + TSS region transcription start site region 93702
Tssr93703 10 62253111 to 62253121 10 + TSS region transcription start site region 93703
Hk1 10 62268855 to 62379908 111053 - protein coding gene hexokinase 1
Tssr93704 10 62300549 to 62300570 21 + TSS region transcription start site region 93704
Tssr97796 10 62327582 to 62327599 17 - TSS region transcription start site region 97796
Tssr97797 10 62327602 to 62327655 53 - TSS region transcription start site region 97797
Tssr97798 10 62327666 to 62327679 13 - TSS region transcription start site region 97798
Cpgi1624 10 62327681 to 62327952 271 CpG island CpG island 1624
Tssr97799 10 62327757 to 62327768 11 - TSS region transcription start site region 97799
Tssr97800 10 62327777 to 62327787 10 - TSS region transcription start site region 97800
Tssr97801 10 62337390 to 62337395 5 - TSS region transcription start site region 97801
Tssr93705 10 62338895 to 62338921 26 + TSS region transcription start site region 93705
Tssr3221 10 62339295 to 62339315 20 - TSS region transcription start site region 3221
Tssr3222 10 62339329 to 62339338 9 - TSS region transcription start site region 3222
Cpgi1625 10 62339524 to 62340746 1222 CpG island CpG island 1625
Tssr97802 10 62340110 to 62340121 11 - TSS region transcription start site region 97802
Tssr97803 10 62340134 to 62340154 20 - TSS region transcription start site region 97803
Tssr97804 10 62340157 to 62340181 24 - TSS region transcription start site region 97804
Tssr93706 10 62340228 to 62340242 14 + TSS region transcription start site region 93706
Tssr97805 10 62340514 to 62340549 35 - TSS region transcription start site region 97805
Hk1os 10 62340607 to 62349866 9259 + antisense lncRNA gene hexokinase 1, opposite strand
Tssr93707 10 62340619 to 62340684 65 + TSS region transcription start site region 93707
Tssr97806 10 62342633 to 62342642 9 - TSS region transcription start site region 97806
Tssr97807 10 62342644 to 62342660 16 - TSS region transcription start site region 97807
Tssr97808 10 62342663 to 62342672 9 - TSS region transcription start site region 97808
Tssr97809 10 62342674 to 62342718 44 - TSS region transcription start site region 97809
Tssr97810 10 62342726 to 62342733 7 - TSS region transcription start site region 97810
Tssr97811 10 62342736 to 62342751 15 - TSS region transcription start site region 97811
Tssr97812 10 62362265 to 62362313 48 - TSS region transcription start site region 97812
Tssr93708 10 62362329 to 62362353 24 + TSS region transcription start site region 93708
Gm40675 10 62362337 to 62363611 1274 + lncRNA gene predicted gene, 40675
Tssr97813 10 62379901 to 62379917 16 - TSS region transcription start site region 97813
Tssr97814 10 62379919 to 62379930 11 - TSS region transcription start site region 97814
Hkdc1 10 62383137 to 62422464 39327 - protein coding gene hexokinase domain containing 1
n-TAagc6 10 62391124 to 62391196 72 - tRNA gene nuclear encoded tRNA alanine 6 (anticodon AGC)
Cpgi1626 10 62401646 to 62401931 285 CpG island CpG island 1626
Cpgi1627 10 62405152 to 62405609 457 CpG island CpG island 1627
Tssr97815 10 62422364 to 62422375 11 - TSS region transcription start site region 97815
Tssr97816 10 62422398 to 62422409 11 - TSS region transcription start site region 97816
Tssr97817 10 62422418 to 62422425 7 - TSS region transcription start site region 97817
Tssr97818 10 62422427 to 62422448 21 - TSS region transcription start site region 97818
Gm30322 10 62422506 to 62430006 7500 + lncRNA gene predicted gene, 30322
Supv3l1 10 62429209 to 62449738 20529 - protein coding gene suppressor of var1, 3-like 1 (S. cerevisiae)
Tssr93709 10 62432649 to 62432656 7 + TSS region transcription start site region 93709
Cpgi1628 10 62449213 to 62450386 1173 CpG island CpG island 1628
4930507D05Rik 10 62449489 to 62451322 1833 + unclassified gene RIKEN cDNA 4930507D05 gene
Tssr97819 10 62449679 to 62449733 54 - TSS region transcription start site region 97819
Tssr97820 10 62449738 to 62449757 19 - TSS region transcription start site region 97820
Vps26a 10 62455235 to 62486805 31570 - protein coding gene VPS26 retromer complex component A
Tssr97821 10 62455680 to 62455692 12 - TSS region transcription start site region 97821
Tssr97822 10 62456310 to 62456322 12 - TSS region transcription start site region 97822
Tssr97823 10 62468319 to 62468345 26 - TSS region transcription start site region 97823
Tssr97824 10 62477758 to 62477763 5 - TSS region transcription start site region 97824
Tssr97825 10 62477923 to 62477928 5 - TSS region transcription start site region 97825
Cpgi1629 10 62486145 to 62487297 1152 CpG island CpG island 1629
Tssr97826 10 62486555 to 62486566 11 - TSS region transcription start site region 97826
Tssr97827 10 62486575 to 62486604 29 - TSS region transcription start site region 97827
Tssr97828 10 62486683 to 62486771 88 - TSS region transcription start site region 97828