Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:60940872-61411132

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq11 10 56604060 to 61105062 4501002 QTL conditioned fear QTL 11
Tssr97743 10 60958072 to 60958082 10 - TSS region transcription start site region 97743
Mir466j 10 60960723 to 60960844 121 + miRNA gene microRNA 466j
Tssr93644 10 61031268 to 61031307 39 + TSS region transcription start site region 93644
Gm20611 10 61031303 to 61038080 6777 + lincRNA gene predicted gene 20611
Gm20625 10 61038229 to 61042811 4582 - lincRNA gene predicted gene 20625
Gm20610 10 61046422 to 61051900 5478 - lincRNA gene predicted gene 20610
Cpgi1600 10 61089237 to 61089683 446 CpG island CpG island 1600
Tssr93645 10 61089327 to 61089345 18 + TSS region transcription start site region 93645
Pcbd1 10 61089331 to 61094324 4993 + protein coding gene pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1
Tssr93646 10 61089348 to 61089396 48 + TSS region transcription start site region 93646
Sgpl1 10 61098642 to 61147684 49042 - protein coding gene sphingosine phosphate lyase 1
Tssr97744 10 61098843 to 61098923 80 - TSS region transcription start site region 97744
Tssr97745 10 61099031 to 61099043 12 - TSS region transcription start site region 97745
Tssr97746 10 61099814 to 61099854 40 - TSS region transcription start site region 97746
Tssr97747 10 61099981 to 61099995 14 - TSS region transcription start site region 97747
Tssr97748 10 61100089 to 61100109 20 - TSS region transcription start site region 97748
Tssr97749 10 61100561 to 61100577 16 - TSS region transcription start site region 97749
Tssr97750 10 61100690 to 61100710 20 - TSS region transcription start site region 97750
Tssr97751 10 61114152 to 61114167 15 - TSS region transcription start site region 97751
Gm44308 10 61125137 to 61125235 98 - miRNA gene predicted gene, 44308
Cpgi1601 10 61146144 to 61148060 1916 CpG island CpG island 1601
Tssr97752 10 61146323 to 61146337 14 - TSS region transcription start site region 97752
Tssr97753 10 61147595 to 61147620 25 - TSS region transcription start site region 97753
Tssr97754 10 61147625 to 61147644 19 - TSS region transcription start site region 97754
Tssr97755 10 61147659 to 61147680 21 - TSS region transcription start site region 97755
Tssr93647 10 61171930 to 61171943 13 + TSS region transcription start site region 93647
Tssr93648 10 61171954 to 61171970 16 + TSS region transcription start site region 93648
Tbata 10 61171964 to 61188841 16877 + protein coding gene thymus, brain and testes associated
D10Mit258 10 61172381 to 61172498 117 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 258
Tssr93649 10 61175184 to 61175200 16 + TSS region transcription start site region 93649
Tssr93650 10 61175206 to 61175222 16 + TSS region transcription start site region 93650
Tssr93651 10 61175310 to 61175318 8 + TSS region transcription start site region 93651
Tssr93652 10 61175385 to 61175399 14 + TSS region transcription start site region 93652
Tssr93653 10 61175591 to 61175601 10 + TSS region transcription start site region 93653
Tssr3214 10 61175620 to 61175637 17 + TSS region transcription start site region 3214
Tssr93654 10 61175654 to 61175671 17 + TSS region transcription start site region 93654
Tssr93655 10 61175682 to 61175693 11 + TSS region transcription start site region 93655
Tssr93656 10 61175712 to 61175729 17 + TSS region transcription start site region 93656
Cpgi1602 10 61175872 to 61176132 260 CpG island CpG island 1602
Tssr97756 10 61180379 to 61180423 44 - TSS region transcription start site region 97756
Tssr93657 10 61180474 to 61180478 4 + TSS region transcription start site region 93657
Adamts14 10 61197112 to 61273438 76326 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14
D10Mit172 10 61197984 to 61198133 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 172
D10Mit172.2 10 61198111 to 61198222 111 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 172.2
Gm29861 10 61215954 to 61219572 3618 + lncRNA gene predicted gene, 29861
Cpgi1603 10 61245772 to 61246165 393 CpG island CpG island 1603
Cpgi1604 10 61272888 to 61274050 1162 CpG island CpG island 1604
Tssr97757 10 61273381 to 61273404 23 - TSS region transcription start site region 97757
Tssr97758 10 61273409 to 61273453 44 - TSS region transcription start site region 97758
Prf1 10 61297546 to 61304263 6717 + protein coding gene perforin 1 (pore forming protein)
Tssr93658 10 61297728 to 61297739 11 + TSS region transcription start site region 93658
Tssr93659 10 61297749 to 61297788 39 + TSS region transcription start site region 93659
Tssr93660 10 61297799 to 61297808 9 + TSS region transcription start site region 93660
Tssr93661 10 61297809 to 61297824 15 + TSS region transcription start site region 93661
Tssr93662 10 61309802 to 61309808 6 + TSS region transcription start site region 93662
Rpl27a-ps1 10 61309830 to 61310277 447 + pseudogene ribosomal protein L27A, pseudogene 1
Pald1 10 61319656 to 61383530 63874 - protein coding gene phosphatase domain containing, paladin 1
D10Mit48 10 61333715 to 61333893 178 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 48
Tssr3215 10 61352006 to 61352008 2 + TSS region transcription start site region 3215
Gm48077 10 61359666 to 61361407 1741 + unclassified gene predicted gene, 48077
Gm48074 10 61379414 to 61381048 1634 - unclassified gene predicted gene, 48074
Cpgi1605 10 61382842 to 61383823 981 CpG island CpG island 1605
Tssr97759 10 61383332 to 61383372 40 - TSS region transcription start site region 97759
Tssr97760 10 61383374 to 61383391 17 - TSS region transcription start site region 97760
Tssr3216 10 61383450 to 61383502 52 - TSS region transcription start site region 3216