Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:60687338-61177365

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq11 10 56604060 to 61105062 4501002 QTL conditioned fear QTL 11
Cdh23 10 60302748 to 60696490 393742 - protein coding gene cadherin 23 (otocadherin)
Cpgi1593 10 60685720 to 60687926 2206 CpG island CpG island 1593
Cpgi1594 10 60691517 to 60691798 281 CpG island CpG island 1594
Tssr97728 10 60696471 to 60696506 35 - TSS region transcription start site region 97728
Slc29a3 10 60712072 to 60752794 40722 - protein coding gene solute carrier family 29 (nucleoside transporters), member 3
Tssr97729 10 60716288 to 60716310 22 - TSS region transcription start site region 97729
Tssr97730 10 60724335 to 60724357 22 - TSS region transcription start site region 97730
Tssr97731 10 60738194 to 60738198 4 - TSS region transcription start site region 97731
Tssr97732 10 60744707 to 60744723 16 - TSS region transcription start site region 97732
Tssr93638 10 60749232 to 60749238 6 + TSS region transcription start site region 93638
Cpgi1595 10 60752484 to 60752948 464 CpG island CpG island 1595
Tssr97733 10 60752773 to 60752820 47 - TSS region transcription start site region 97733
Unc5b 10 60762593 to 60831581 68988 - protein coding gene unc-5 netrin receptor B
Cpgi1596 10 60780050 to 60780378 328 CpG island CpG island 1596
Cpgi1597 10 60807899 to 60808234 335 CpG island CpG island 1597
Gm19972 10 60808660 to 60814323 5663 - unclassified non-coding RNA gene predicted gene, 19972
Tssr97734 10 60816971 to 60816989 18 - TSS region transcription start site region 97734
Cpgi1598 10 60826390 to 60827239 849 CpG island CpG island 1598
Cpgi1599 10 60830402 to 60831886 1484 CpG island CpG island 1599
Tssr97735 10 60831434 to 60831446 12 - TSS region transcription start site region 97735
Tssr97736 10 60831452 to 60831472 20 - TSS region transcription start site region 97736
Tssr97737 10 60831491 to 60831509 18 - TSS region transcription start site region 97737
Tssr97738 10 60831571 to 60831588 17 - TSS region transcription start site region 97738
Tssr97739 10 60831603 to 60831617 14 - TSS region transcription start site region 97739
Tssr97740 10 60834965 to 60834992 27 - TSS region transcription start site region 97740
Gm36750 10 60888607 to 60890486 1879 + lncRNA gene predicted gene, 36750
Tssr93639 10 60892294 to 60892297 3 + TSS region transcription start site region 93639
Mir6408 10 60923023 to 60923113 90 + miRNA gene microRNA 6408
Gm46227 10 60927343 to 60928325 982 + lncRNA gene predicted gene, 46227
Pldi 10 60928226 to 60938132 9906 - lincRNA gene polymorphic derived intron containing
Gm26947 10 60931986 to 60940634 8648 + antisense lncRNA gene predicted gene, 26947
Tssr93640 10 60931990 to 60932004 14 + TSS region transcription start site region 93640
Tssr93641 10 60932036 to 60932050 14 + TSS region transcription start site region 93641
Tssr93642 10 60932338 to 60932365 27 + TSS region transcription start site region 93642
Tssr93643 10 60933087 to 60933099 12 + TSS region transcription start site region 93643
Tssr97741 10 60938099 to 60938114 15 - TSS region transcription start site region 97741
Tssr97742 10 60938123 to 60938142 19 - TSS region transcription start site region 97742
Tssr97743 10 60958072 to 60958082 10 - TSS region transcription start site region 97743
Mir466j 10 60960723 to 60960844 121 + miRNA gene microRNA 466j
Tssr93644 10 61031268 to 61031307 39 + TSS region transcription start site region 93644
Gm20611 10 61031303 to 61038080 6777 + lincRNA gene predicted gene 20611
Gm20625 10 61038229 to 61042811 4582 - lincRNA gene predicted gene 20625
Gm20610 10 61046422 to 61051900 5478 - lincRNA gene predicted gene 20610
Cpgi1600 10 61089237 to 61089683 446 CpG island CpG island 1600
Tssr93645 10 61089327 to 61089345 18 + TSS region transcription start site region 93645
Pcbd1 10 61089331 to 61094324 4993 + protein coding gene pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1
Tssr93646 10 61089348 to 61089396 48 + TSS region transcription start site region 93646
Sgpl1 10 61098642 to 61147684 49042 - protein coding gene sphingosine phosphate lyase 1
Tssr97744 10 61098843 to 61098923 80 - TSS region transcription start site region 97744
Tssr97745 10 61099031 to 61099043 12 - TSS region transcription start site region 97745
Tssr97746 10 61099814 to 61099854 40 - TSS region transcription start site region 97746
Tssr97747 10 61099981 to 61099995 14 - TSS region transcription start site region 97747
Tssr97748 10 61100089 to 61100109 20 - TSS region transcription start site region 97748
Tssr97749 10 61100561 to 61100577 16 - TSS region transcription start site region 97749
Tssr97750 10 61100690 to 61100710 20 - TSS region transcription start site region 97750
Tssr97751 10 61114152 to 61114167 15 - TSS region transcription start site region 97751
Gm44308 10 61125137 to 61125235 98 - miRNA gene predicted gene, 44308
Cpgi1601 10 61146144 to 61148060 1916 CpG island CpG island 1601
Tssr97752 10 61146323 to 61146337 14 - TSS region transcription start site region 97752
Tssr97753 10 61147595 to 61147620 25 - TSS region transcription start site region 97753
Tssr97754 10 61147625 to 61147644 19 - TSS region transcription start site region 97754
Tssr97755 10 61147659 to 61147680 21 - TSS region transcription start site region 97755
Tssr93647 10 61171930 to 61171943 13 + TSS region transcription start site region 93647
Tssr93648 10 61171954 to 61171970 16 + TSS region transcription start site region 93648
Tbata 10 61171964 to 61188841 16877 + protein coding gene thymus, brain and testes associated
D10Mit258 10 61172381 to 61172498 117 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 258
Tssr93649 10 61175184 to 61175200 16 + TSS region transcription start site region 93649
Tssr93650 10 61175206 to 61175222 16 + TSS region transcription start site region 93650
Tssr93651 10 61175310 to 61175318 8 + TSS region transcription start site region 93651
Tssr93652 10 61175385 to 61175399 14 + TSS region transcription start site region 93652
Tssr93653 10 61175591 to 61175601 10 + TSS region transcription start site region 93653
Tssr3214 10 61175620 to 61175637 17 + TSS region transcription start site region 3214
Tssr93654 10 61175654 to 61175671 17 + TSS region transcription start site region 93654
Tssr93655 10 61175682 to 61175693 11 + TSS region transcription start site region 93655
Tssr93656 10 61175712 to 61175729 17 + TSS region transcription start site region 93656
Cpgi1602 10 61175872 to 61176132 260 CpG island CpG island 1602