Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:60315134-64365154

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595 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq11 10 56604060 to 61105062 4501002 QTL conditioned fear QTL 11
Cdh23 10 60302748 to 60696490 393742 - protein coding gene cadherin 23 (otocadherin)
Tssr97718 10 60331928 to 60331935 7 - TSS region transcription start site region 97718
Cpgi1591 10 60346518 to 60347283 765 CpG island CpG island 1591
Tssr93614 10 60346647 to 60346655 8 + TSS region transcription start site region 93614
Vsir 10 60346851 to 60372684 25833 + protein coding gene V-set immunoregulatory receptor
Tssr93615 10 60346896 to 60346916 20 + TSS region transcription start site region 93615
Tssr93616 10 60347281 to 60347292 11 + TSS region transcription start site region 93616
Tssr93617 10 60349318 to 60349325 7 + TSS region transcription start site region 93617
Tssr93618 10 60349352 to 60349362 10 + TSS region transcription start site region 93618
Tssr97719 10 60350402 to 60350444 42 - TSS region transcription start site region 97719
Tssr93619 10 60350695 to 60350705 10 + TSS region transcription start site region 93619
Tssr93620 10 60351054 to 60351077 23 + TSS region transcription start site region 93620
Tssr97720 10 60351851 to 60351871 20 - TSS region transcription start site region 97720
Tssr93621 10 60357984 to 60358037 53 + TSS region transcription start site region 93621
Tssr97721 10 60358047 to 60358100 53 - TSS region transcription start site region 97721
Tssr93622 10 60358096 to 60358121 25 + TSS region transcription start site region 93622
Tssr97722 10 60358214 to 60358234 20 - TSS region transcription start site region 97722
Tssr97723 10 60358249 to 60358266 17 - TSS region transcription start site region 97723
Tssr93623 10 60358482 to 60358485 3 + TSS region transcription start site region 93623
Tssr93624 10 60364236 to 60364265 29 + TSS region transcription start site region 93624
Tssr93625 10 60367575 to 60367642 67 + TSS region transcription start site region 93625
Tssr93626 10 60369680 to 60369696 16 + TSS region transcription start site region 93626
Tssr93627 10 60371812 to 60371825 13 + TSS region transcription start site region 93627
Tssr93628 10 60372488 to 60372491 3 + TSS region transcription start site region 93628
Tssr93629 10 60374760 to 60374764 4 + TSS region transcription start site region 93629
Tssr97724 10 60380222 to 60380232 10 - TSS region transcription start site region 97724
Tssr93630 10 60380587 to 60380596 9 + TSS region transcription start site region 93630
Tssr93631 10 60380646 to 60380658 12 + TSS region transcription start site region 93631
Tssr93632 10 60390783 to 60390800 17 + TSS region transcription start site region 93632
Gm17455 10 60399726 to 60403559 3833 + protein coding gene predicted gene, 17455
Tssr93633 10 60399749 to 60399772 23 + TSS region transcription start site region 93633
Tssr93634 10 60399802 to 60399805 3 + TSS region transcription start site region 93634
Tssr93635 10 60399849 to 60399876 27 + TSS region transcription start site region 93635
Tssr93636 10 60400753 to 60400764 11 + TSS region transcription start site region 93636
Tssr93637 10 60426078 to 60426080 2 + TSS region transcription start site region 93637
D10Ertd140e 10 60445908 to 60446118 210 DNA segment DNA segment, Chr 10, ERATO Doi 140, expressed
Tssr97725 10 60454947 to 60454948 1 - TSS region transcription start site region 97725
Tssr3213 10 60479684 to 60479706 22 + TSS region transcription start site region 3213
Cpgi1592 10 60566441 to 60566856 415 CpG island CpG island 1592
Cpgi1593 10 60685720 to 60687926 2206 CpG island CpG island 1593
Tssr97726 10 60687212 to 60687232 20 - TSS region transcription start site region 97726
Tssr97727 10 60687233 to 60687271 38 - TSS region transcription start site region 97727
Cpgi1594 10 60691517 to 60691798 281 CpG island CpG island 1594
Tssr97728 10 60696471 to 60696506 35 - TSS region transcription start site region 97728
Slc29a3 10 60712072 to 60752794 40722 - protein coding gene solute carrier family 29 (nucleoside transporters), member 3
Tssr97729 10 60716288 to 60716310 22 - TSS region transcription start site region 97729
Tssr97730 10 60724335 to 60724357 22 - TSS region transcription start site region 97730
Tssr97731 10 60738194 to 60738198 4 - TSS region transcription start site region 97731
Tssr97732 10 60744707 to 60744723 16 - TSS region transcription start site region 97732
Tssr93638 10 60749232 to 60749238 6 + TSS region transcription start site region 93638
Cpgi1595 10 60752484 to 60752948 464 CpG island CpG island 1595
Tssr97733 10 60752773 to 60752820 47 - TSS region transcription start site region 97733
Unc5b 10 60762593 to 60831581 68988 - protein coding gene unc-5 netrin receptor B
Cpgi1596 10 60780050 to 60780378 328 CpG island CpG island 1596
Cpgi1597 10 60807899 to 60808234 335 CpG island CpG island 1597
Gm19972 10 60808660 to 60814323 5663 - unclassified non-coding RNA gene predicted gene, 19972
Tssr97734 10 60816971 to 60816989 18 - TSS region transcription start site region 97734
Cpgi1598 10 60826390 to 60827239 849 CpG island CpG island 1598
Cpgi1599 10 60830402 to 60831886 1484 CpG island CpG island 1599
Tssr97735 10 60831434 to 60831446 12 - TSS region transcription start site region 97735
Tssr97736 10 60831452 to 60831472 20 - TSS region transcription start site region 97736
Tssr97737 10 60831491 to 60831509 18 - TSS region transcription start site region 97737
Tssr97738 10 60831571 to 60831588 17 - TSS region transcription start site region 97738
Tssr97739 10 60831603 to 60831617 14 - TSS region transcription start site region 97739
Tssr97740 10 60834965 to 60834992 27 - TSS region transcription start site region 97740
Gm36750 10 60888607 to 60890486 1879 + lncRNA gene predicted gene, 36750
Tssr93639 10 60892294 to 60892297 3 + TSS region transcription start site region 93639
Mir6408 10 60923023 to 60923113 90 + miRNA gene microRNA 6408
Gm46227 10 60927343 to 60928325 982 + lncRNA gene predicted gene, 46227
Pldi 10 60928226 to 60938132 9906 - lincRNA gene polymorphic derived intron containing
Gm26947 10 60931986 to 60940634 8648 + antisense lncRNA gene predicted gene, 26947
Tssr93640 10 60931990 to 60932004 14 + TSS region transcription start site region 93640
Tssr93641 10 60932036 to 60932050 14 + TSS region transcription start site region 93641
Tssr93642 10 60932338 to 60932365 27 + TSS region transcription start site region 93642
Tssr93643 10 60933087 to 60933099 12 + TSS region transcription start site region 93643
Tssr97741 10 60938099 to 60938114 15 - TSS region transcription start site region 97741
Tssr97742 10 60938123 to 60938142 19 - TSS region transcription start site region 97742
Tssr97743 10 60958072 to 60958082 10 - TSS region transcription start site region 97743
Mir466j 10 60960723 to 60960844 121 + miRNA gene microRNA 466j
Tssr93644 10 61031268 to 61031307 39 + TSS region transcription start site region 93644
Gm20611 10 61031303 to 61038080 6777 + lincRNA gene predicted gene 20611
Gm20625 10 61038229 to 61042811 4582 - lincRNA gene predicted gene 20625
Gm20610 10 61046422 to 61051900 5478 - lincRNA gene predicted gene 20610
Cpgi1600 10 61089237 to 61089683 446 CpG island CpG island 1600
Tssr93645 10 61089327 to 61089345 18 + TSS region transcription start site region 93645
Pcbd1 10 61089331 to 61094324 4993 + protein coding gene pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1
Tssr93646 10 61089348 to 61089396 48 + TSS region transcription start site region 93646
Sgpl1 10 61098642 to 61147684 49042 - protein coding gene sphingosine phosphate lyase 1
Tssr97744 10 61098843 to 61098923 80 - TSS region transcription start site region 97744
Tssr97745 10 61099031 to 61099043 12 - TSS region transcription start site region 97745
Tssr97746 10 61099814 to 61099854 40 - TSS region transcription start site region 97746
Tssr97747 10 61099981 to 61099995 14 - TSS region transcription start site region 97747
Tssr97748 10 61100089 to 61100109 20 - TSS region transcription start site region 97748
Tssr97749 10 61100561 to 61100577 16 - TSS region transcription start site region 97749
Tssr97750 10 61100690 to 61100710 20 - TSS region transcription start site region 97750
Tssr97751 10 61114152 to 61114167 15 - TSS region transcription start site region 97751
Gm44308 10 61125137 to 61125235 98 - miRNA gene predicted gene, 44308
Cpgi1601 10 61146144 to 61148060 1916 CpG island CpG island 1601
Tssr97752 10 61146323 to 61146337 14 - TSS region transcription start site region 97752
Tssr97753 10 61147595 to 61147620 25 - TSS region transcription start site region 97753
Tssr97754 10 61147625 to 61147644 19 - TSS region transcription start site region 97754
Tssr97755 10 61147659 to 61147680 21 - TSS region transcription start site region 97755
Tssr93647 10 61171930 to 61171943 13 + TSS region transcription start site region 93647
Tssr93648 10 61171954 to 61171970 16 + TSS region transcription start site region 93648
Tbata 10 61171964 to 61188841 16877 + protein coding gene thymus, brain and testes associated
D10Mit258 10 61172381 to 61172498 117 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 258
Tssr93649 10 61175184 to 61175200 16 + TSS region transcription start site region 93649
Tssr93650 10 61175206 to 61175222 16 + TSS region transcription start site region 93650
Tssr93651 10 61175310 to 61175318 8 + TSS region transcription start site region 93651
Tssr93652 10 61175385 to 61175399 14 + TSS region transcription start site region 93652
Tssr93653 10 61175591 to 61175601 10 + TSS region transcription start site region 93653
Tssr3214 10 61175620 to 61175637 17 + TSS region transcription start site region 3214
Tssr93654 10 61175654 to 61175671 17 + TSS region transcription start site region 93654
Tssr93655 10 61175682 to 61175693 11 + TSS region transcription start site region 93655
Tssr93656 10 61175712 to 61175729 17 + TSS region transcription start site region 93656
Cpgi1602 10 61175872 to 61176132 260 CpG island CpG island 1602
Tssr97756 10 61180379 to 61180423 44 - TSS region transcription start site region 97756
Tssr93657 10 61180474 to 61180478 4 + TSS region transcription start site region 93657
Adamts14 10 61197112 to 61273438 76326 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14
D10Mit172 10 61197984 to 61198133 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 172
D10Mit172.2 10 61198111 to 61198222 111 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 172.2
Gm29861 10 61215954 to 61219572 3618 + lncRNA gene predicted gene, 29861
Cpgi1603 10 61245772 to 61246165 393 CpG island CpG island 1603
Cpgi1604 10 61272888 to 61274050 1162 CpG island CpG island 1604
Tssr97757 10 61273381 to 61273404 23 - TSS region transcription start site region 97757
Tssr97758 10 61273409 to 61273453 44 - TSS region transcription start site region 97758
Prf1 10 61297546 to 61304263 6717 + protein coding gene perforin 1 (pore forming protein)
Tssr93658 10 61297728 to 61297739 11 + TSS region transcription start site region 93658
Tssr93659 10 61297749 to 61297788 39 + TSS region transcription start site region 93659
Tssr93660 10 61297799 to 61297808 9 + TSS region transcription start site region 93660
Tssr93661 10 61297809 to 61297824 15 + TSS region transcription start site region 93661
Tssr93662 10 61309802 to 61309808 6 + TSS region transcription start site region 93662
Rpl27a-ps1 10 61309830 to 61310277 447 + pseudogene ribosomal protein L27A, pseudogene 1
Pald1 10 61319656 to 61383530 63874 - protein coding gene phosphatase domain containing, paladin 1
D10Mit48 10 61333715 to 61333893 178 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 48
Tssr3215 10 61352006 to 61352008 2 + TSS region transcription start site region 3215
Gm48077 10 61359666 to 61361407 1741 + unclassified gene predicted gene, 48077
Gm48074 10 61379414 to 61381048 1634 - unclassified gene predicted gene, 48074
Cpgi1605 10 61382842 to 61383823 981 CpG island CpG island 1605
Tssr97759 10 61383332 to 61383372 40 - TSS region transcription start site region 97759
Tssr97760 10 61383374 to 61383391 17 - TSS region transcription start site region 97760
Tssr3216 10 61383450 to 61383502 52 - TSS region transcription start site region 3216
Tssr97761 10 61415607 to 61415632 25 - TSS region transcription start site region 97761
Tssr93663 10 61416279 to 61416300 21 + TSS region transcription start site region 93663
Tssr93664 10 61416530 to 61416545 15 + TSS region transcription start site region 93664
Tssr97762 10 61416700 to 61416707 7 - TSS region transcription start site region 97762
Nodal 10 61417972 to 61425337 7365 + protein coding gene nodal
Cpgi1606 10 61418208 to 61419408 1200 CpG island CpG island 1606
Tssr93665 10 61418283 to 61418289 6 + TSS region transcription start site region 93665
D10Mit112.1 10 61424705 to 61424899 194 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112.1
D10Mit112 10 61424897 to 61425027 130 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112
D10Mit112.2 10 61425078 to 61425193 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112.2
Eif4ebp2 10 61428491 to 61452661 24170 - protein coding gene eukaryotic translation initiation factor 4E binding protein 2
Tssr97763 10 61432711 to 61432746 35 - TSS region transcription start site region 97763
Tssr97764 10 61432768 to 61432821 53 - TSS region transcription start site region 97764
Tssr97765 10 61432933 to 61432948 15 - TSS region transcription start site region 97765
Tssr97766 10 61433215 to 61433249 34 - TSS region transcription start site region 97766
Tssr97767 10 61435036 to 61435065 29 - TSS region transcription start site region 97767
A130019P10Rik 10 61440942 to 61442412 1470 unclassified gene RIKEN cDNA A130019P10 gene
Gm48086 10 61446902 to 61450717 3815 - sense intronic lncRNA gene predicted gene, 48086
Cpgi1607 10 61451959 to 61453093 1134 CpG island CpG island 1607
Tssr97768 10 61452418 to 61452434 16 - TSS region transcription start site region 97768
Tssr97769 10 61452772 to 61452813 41 - TSS region transcription start site region 97769
D830039M14Rik 10 61473576 to 61476937 3361 - antisense lncRNA gene RIKEN cDNA D830039M14 gene
Cpgi1608 10 61475327 to 61476756 1429 CpG island CpG island 1608
Tssr93666 10 61475782 to 61475834 52 + TSS region transcription start site region 93666
Lrrc20 10 61475801 to 61582791 106990 + protein coding gene leucine rich repeat containing 20
Tssr97770 10 61476675 to 61476690 15 - TSS region transcription start site region 97770
Tssr93667 10 61482132 to 61482140 8 + TSS region transcription start site region 93667
Tssr93668 10 61482272 to 61482285 13 + TSS region transcription start site region 93668
Gm47595 10 61494917 to 61496290 1373 - antisense lncRNA gene predicted gene, 47595
Gm47593 10 61496600 to 61499601 3001 - antisense lncRNA gene predicted gene, 47593
Gm17829 10 61510242 to 61510585 343 - pseudogene predicted gene, 17829
Gm47594 10 61570911 to 61575064 4153 + unclassified gene predicted gene, 47594
Gm28447 10 61585393 to 61611074 25681 - unclassified non-coding RNA gene predicted gene 28447
4930516E23Rik 10 61591240 to 61592216 976 unclassified gene RIKEN cDNA 4930516E23 gene
Cpgi1609 10 61594923 to 61595543 620 CpG island CpG island 1609
Tssr93669 10 61595293 to 61595297 4 + TSS region transcription start site region 93669
Npffr1 10 61595492 to 61628565 33073 + protein coding gene neuropeptide FF receptor 1
Cpgi1610 10 61613920 to 61614329 409 CpG island CpG island 1610
Cpgi1611 10 61625223 to 61626361 1138 CpG island CpG island 1611
Cpgi1612 10 61648337 to 61649343 1006 CpG island CpG island 1612
Tssr97771 10 61648458 to 61648504 46 - TSS region transcription start site region 97771
Tssr93670 10 61648560 to 61648578 18 + TSS region transcription start site region 93670
Tssr93671 10 61648587 to 61648636 49 + TSS region transcription start site region 93671
Ppa1 10 61648621 to 61674165 25544 + protein coding gene pyrophosphatase (inorganic) 1
Tssr93672 10 61648642 to 61648662 20 + TSS region transcription start site region 93672
Tssr93673 10 61648673 to 61648686 13 + TSS region transcription start site region 93673
1700022H01Rik 10 61674789 to 61680255 5466 - bidirectional promoter lncRNA gene RIKEN cDNA 1700022H01 gene
Cpgi1613 10 61679989 to 61680888 899 CpG island CpG island 1613
Tssr97772 10 61680040 to 61680064 24 - TSS region transcription start site region 97772
Tssr97773 10 61680247 to 61680258 11 - TSS region transcription start site region 97773
Tssr97774 10 61680259 to 61680276 17 - TSS region transcription start site region 97774
Tssr97775 10 61680280 to 61680291 11 - TSS region transcription start site region 97775
Tssr93674 10 61680302 to 61680361 59 + TSS region transcription start site region 93674
Sar1a 10 61680304 to 61693297 12993 + protein coding gene secretion associated Ras related GTPase 1A
Tssr93675 10 61689627 to 61689664 37 + TSS region transcription start site region 93675
Cpgi1614 10 61695127 to 61697118 1991 CpG island CpG island 1614
Tssr93676 10 61695503 to 61695576 73 + TSS region transcription start site region 93676