Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:5988130-8138141

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161 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi1256 10 6035834 to 6036134 300 CpG island CpG island 1256
D10Mit49 10 6201945 to 6202049 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 49
Gm3213 10 6367676 to 6368484 808 + protein coding gene predicted gene 3213
Gm46187 10 6401565 to 6404977 3412 + pseudogene predicted gene, 46187
Gm47755 10 6422698 to 6422884 186 + pseudogene predicted gene, 47755
Gm4921 10 6525883 to 6526874 991 - pseudogene predicted gene 4921
Gm10945 10 6740629 to 6761761 21132 - protein coding gene predicted gene 10945
Oprm1 10 6758593 to 7038209 279616 + protein coding gene opioid receptor, mu 1
Cpgi1255 10 6788572 to 6789111 539 CpG island CpG island 1255
Tssr92291 10 6788578 to 6788617 39 + TSS region transcription start site region 92291
Tssr92292 10 6788699 to 6788716 17 + TSS region transcription start site region 92292
Tssr92293 10 6788830 to 6788843 13 + TSS region transcription start site region 92293
Tssr92294 10 6789044 to 6789051 7 + TSS region transcription start site region 92294
Tssr92295 10 6851719 to 6851721 2 + TSS region transcription start site region 92295
Ipcef1 10 6885796 to 7052478 166682 - protein coding gene interaction protein for cytohesin exchange factors 1
Tssr96571 10 6916326 to 6916327 1 - TSS region transcription start site region 96571
D10Mit75 10 6918563 to 6918712 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 75
Tssr3123 10 6979595 to 6979615 20 + TSS region transcription start site region 3123
Tssr96572 10 6980065 to 6980068 3 - TSS region transcription start site region 96572
Tssr96573 10 6980296 to 6980320 24 - TSS region transcription start site region 96573
Tssr96574 10 6980346 to 6980355 9 - TSS region transcription start site region 96574
Tssr96575 10 6980389 to 6980398 9 - TSS region transcription start site region 96575
Tssr96576 10 6980445 to 6980490 45 - TSS region transcription start site region 96576
Tssr96577 10 6980499 to 6980508 9 - TSS region transcription start site region 96577
Tssr96578 10 6982942 to 6982965 23 - TSS region transcription start site region 96578
Tssr3124 10 6986531 to 6986552 21 + TSS region transcription start site region 3124
Gm15536 10 7038661 to 7038774 113 + pseudogene predicted gene 15536
Tssr96579 10 7054892 to 7054897 5 - TSS region transcription start site region 96579
Tssr96580 10 7054917 to 7054927 10 - TSS region transcription start site region 96580
Tssr96581 10 7054941 to 7054956 15 - TSS region transcription start site region 96581
Tssr96582 10 7054960 to 7054979 19 - TSS region transcription start site region 96582
Tssr96583 10 7063100 to 7063109 9 - TSS region transcription start site region 96583
Tssr3125 10 7063130 to 7063141 11 - TSS region transcription start site region 3125
Tssr3126 10 7063165 to 7063169 4 - TSS region transcription start site region 3126
Tssr96584 10 7064190 to 7064201 11 - TSS region transcription start site region 96584
Tssr96585 10 7064231 to 7064243 12 - TSS region transcription start site region 96585
Tssr96586 10 7064251 to 7064266 15 - TSS region transcription start site region 96586
Tssr96587 10 7064275 to 7064280 5 - TSS region transcription start site region 96587
Cnksr3 10 7119063 to 7212237 93174 - protein coding gene Cnksr family member 3
Tssr3127 10 7131957 to 7131959 2 + TSS region transcription start site region 3127
Tssr96588 10 7140378 to 7140393 15 - TSS region transcription start site region 96588
Tssr96589 10 7140395 to 7140408 13 - TSS region transcription start site region 96589
Cpgi1254 10 7207268 to 7207432 164 CpG island CpG island 1254
Cpgi1253 10 7210904 to 7212557 1653 CpG island CpG island 1253
Tssr96590 10 7212197 to 7212220 23 - TSS region transcription start site region 96590
Tssr96591 10 7212222 to 7212247 25 - TSS region transcription start site region 96591
Tssr92296 10 7212293 to 7212331 38 + TSS region transcription start site region 92296
Gm46208 10 7212300 to 7215108 2808 + lncRNA gene predicted gene, 46208
Tssr92297 10 7212334 to 7212362 28 + TSS region transcription start site region 92297
Tssr92298 10 7212380 to 7212390 10 + TSS region transcription start site region 92298
Tssr96592 10 7212634 to 7212672 38 - TSS region transcription start site region 96592
Tssr3128 10 7325696 to 7325699 3 + TSS region transcription start site region 3128
Gm21321 10 7390133 to 7392184 2051 - pseudogene predicted gene, 21321
Ulbp1 10 7444873 to 7473640 28767 - protein coding gene UL16 binding protein 1
Tssr3129 10 7458313 to 7458318 5 + TSS region transcription start site region 3129
Gm46209 10 7458356 to 7458908 552 + pseudogene predicted gene, 46209
Tssr3130 10 7473351 to 7473368 17 - TSS region transcription start site region 3130
Tssr3131 10 7473553 to 7473598 45 - TSS region transcription start site region 3131
Tssr3132 10 7473606 to 7473634 28 - TSS region transcription start site region 3132
Gm46196 10 7477962 to 7481919 3957 - pseudogene predicted gene, 46196
Gm40597 10 7491291 to 7584584 93293 - lncRNA gene predicted gene, 40597
Gm48121 10 7577103 to 7577373 270 + pseudogene predicted gene, 48121
Cpgi1272 10 7589398 to 7590876 1478 CpG island CpG island 1272
Tssr92299 10 7589788 to 7589876 88 + TSS region transcription start site region 92299
Lrp11 10 7589800 to 7625483 35683 + protein coding gene low density lipoprotein receptor-related protein 11
Tssr92300 10 7589885 to 7589902 17 + TSS region transcription start site region 92300
Tssr92301 10 7590074 to 7590124 50 + TSS region transcription start site region 92301
Gm16254 10 7606084 to 7606813 729 - pseudogene predicted gene 16254
Tssr92302 10 7629321 to 7629335 14 + TSS region transcription start site region 92302
Pcmt1 10 7629373 to 7681136 51763 - protein coding gene protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
Tssr92303 10 7654463 to 7654465 2 + TSS region transcription start site region 92303
Tssr96593 10 7661982 to 7661991 9 - TSS region transcription start site region 96593
Cpgi1273 10 7662632 to 7663800 1168 CpG island CpG island 1273
Tssr92304 10 7662795 to 7662800 5 + TSS region transcription start site region 92304
Tssr96594 10 7663245 to 7663309 64 - TSS region transcription start site region 96594
Tssr92305 10 7663368 to 7663395 27 + TSS region transcription start site region 92305
A630066F11Rik 10 7663371 to 7664623 1252 + lncRNA gene RIKEN cDNA A630066F11 gene
Tssr92306 10 7663399 to 7663417 18 + TSS region transcription start site region 92306
Tssr96595 10 7663553 to 7663565 12 - TSS region transcription start site region 96595
Tssr96596 10 7663569 to 7663613 44 - TSS region transcription start site region 96596
Tssr96597 10 7663696 to 7663721 25 - TSS region transcription start site region 96597
Tssr96598 10 7664075 to 7664085 10 - TSS region transcription start site region 96598
Tssr96599 10 7664087 to 7664095 8 - TSS region transcription start site region 96599
Tssr96600 10 7664119 to 7664128 9 - TSS region transcription start site region 96600
Tssr96601 10 7664139 to 7664149 10 - TSS region transcription start site region 96601
Cpgi1274 10 7667394 to 7667858 464 CpG island CpG island 1274
Nup43 10 7667503 to 7678881 11378 + protein coding gene nucleoporin 43
Tssr92307 10 7667506 to 7667558 52 + TSS region transcription start site region 92307
BC020402 10 7678971 to 7681158 2187 - lncRNA gene cDNA sequence BC020402
Cpgi1275 10 7680531 to 7681939 1408 CpG island CpG island 1275
Tssr92308 10 7680918 to 7681025 107 + TSS region transcription start site region 92308
Tssr96602 10 7681118 to 7681163 45 - TSS region transcription start site region 96602
Tssr92309 10 7681185 to 7681196 11 + TSS region transcription start site region 92309
Tssr92310 10 7681197 to 7681225 28 + TSS region transcription start site region 92310
Lats1 10 7681214 to 7716460 35246 + protein coding gene large tumor suppressor
Tssr92311 10 7709032 to 7709070 38 + TSS region transcription start site region 92311
Cpgi1276 10 7725810 to 7726414 604 CpG island CpG island 1276
Tssr92312 10 7725997 to 7726014 17 + TSS region transcription start site region 92312
Katna1 10 7726000 to 7763150 37150 + protein coding gene katanin p60 (ATPase-containing) subunit A1
Tssr92313 10 7726061 to 7726083 22 + TSS region transcription start site region 92313
Tssr92314 10 7726681 to 7726694 13 + TSS region transcription start site region 92314
Gm20470 10 7743520 to 7761099 17579 - unclassified non-coding RNA gene predicted gene 20470
Tssr92315 10 7753563 to 7753575 12 + TSS region transcription start site region 92315
Tssr92316 10 7758694 to 7758701 7 + TSS region transcription start site region 92316
Ginm1 10 7767947 to 7780948 13001 - protein coding gene glycoprotein integral membrane 1
Tssr96603 10 7768539 to 7768559 20 - TSS region transcription start site region 96603
B430219N15Rik 10 7780185 to 7781357 1172 + antisense lncRNA gene RIKEN cDNA B430219N15 gene
Cpgi1277 10 7780238 to 7781069 831 CpG island CpG island 1277
Tssr92317 10 7780265 to 7780277 12 + TSS region transcription start site region 92317
Tssr96604 10 7780866 to 7780923 57 - TSS region transcription start site region 96604
6530403G13Rik 10 7791404 to 7792831 1427 - lncRNA gene RIKEN cDNA 6530403G13 gene
Cpgi1278 10 7792519 to 7793449 930 CpG island CpG island 1278
Tssr96605 10 7792795 to 7792833 38 - TSS region transcription start site region 96605
Ppil4 10 7792883 to 7822565 29682 + protein coding gene peptidylprolyl isomerase (cyclophilin)-like 4
Tssr92318 10 7792897 to 7792936 39 + TSS region transcription start site region 92318
Tssr92319 10 7802974 to 7802978 4 + TSS region transcription start site region 92319
Gm15560 10 7808116 to 7808758 642 - pseudogene predicted gene 15560
Tssr92320 10 7810356 to 7810368 12 + TSS region transcription start site region 92320
Tssr96606 10 7824579 to 7824599 20 - TSS region transcription start site region 96606
Tssr92321 10 7824963 to 7824979 16 + TSS region transcription start site region 92321
Tssr92322 10 7832315 to 7832325 10 + TSS region transcription start site region 92322
Tssr92323 10 7832326 to 7832367 41 + TSS region transcription start site region 92323
Tssr92324 10 7832414 to 7832454 40 + TSS region transcription start site region 92324
Tssr92325 10 7832457 to 7832491 34 + TSS region transcription start site region 92325
Zc3h12d 10 7832470 to 7870396 37926 + protein coding gene zinc finger CCCH type containing 12D
Tssr92326 10 7832507 to 7832520 13 + TSS region transcription start site region 92326
Tssr96607 10 7833276 to 7833289 13 - TSS region transcription start site region 96607
Mir5104 10 7836381 to 7836474 93 + miRNA gene microRNA 5104
Tssr92327 10 7836468 to 7836487 19 + TSS region transcription start site region 92327
Tssr92328 10 7839687 to 7839712 25 + TSS region transcription start site region 92328
Gm24726 10 7848361 to 7848481 120 - snoRNA gene predicted gene, 24726
Tssr92329 10 7858593 to 7858602 9 + TSS region transcription start site region 92329
Tssr92330 10 7862090 to 7862103 13 + TSS region transcription start site region 92330
Cpgi1279 10 7862287 to 7862652 365 CpG island CpG island 1279
Cpgi1280 10 7867119 to 7868168 1049 CpG island CpG island 1280
Tssr92331 10 7868873 to 7868878 5 + TSS region transcription start site region 92331
Tab2 10 7905653 to 7956230 50577 - protein coding gene TGF-beta activated kinase 1/MAP3K7 binding protein 2
Tssr96608 10 7906314 to 7906348 34 - TSS region transcription start site region 96608
Tssr96609 10 7906970 to 7906989 19 - TSS region transcription start site region 96609
Tssr96610 10 7919800 to 7919816 16 - TSS region transcription start site region 96610
Tssr96611 10 7919872 to 7919891 19 - TSS region transcription start site region 96611
Tssr96612 10 7919934 to 7919961 27 - TSS region transcription start site region 96612
Tssr96613 10 7919987 to 7920017 30 - TSS region transcription start site region 96613
Tssr96614 10 7920024 to 7920073 49 - TSS region transcription start site region 96614
Tssr96615 10 7920080 to 7920094 14 - TSS region transcription start site region 96615
Tssr96616 10 7920144 to 7920158 14 - TSS region transcription start site region 96616
D10Mit181 10 7922001 to 7922149 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 181
Tssr96617 10 7936058 to 7936062 4 - TSS region transcription start site region 96617
Tssr96618 10 7946820 to 7946833 13 - TSS region transcription start site region 96618
6430537I21Rik 10 7949947 to 7954572 4625 unclassified gene RIKEN cDNA 6430537I21 gene
Tssr96619 10 7950160 to 7950167 7 - TSS region transcription start site region 96619
Cpgi1281 10 7955187 to 7957001 1814 CpG island CpG island 1281
Tssr96620 10 7955898 to 7955942 44 - TSS region transcription start site region 96620
Tssr96621 10 7956063 to 7956147 84 - TSS region transcription start site region 96621
Tssr96622 10 7956223 to 7956271 48 - TSS region transcription start site region 96622
Tssr96623 10 7956274 to 7956290 16 - TSS region transcription start site region 96623
Tssr96624 10 7956452 to 7956488 36 - TSS region transcription start site region 96624
Gm30820 10 7979880 to 7988871 8991 + lncRNA gene predicted gene, 30820
Gm48614 10 8001943 to 8021292 19349 - lincRNA gene predicted gene, 48614
Cpgi1282 10 8135673 to 8135914 241 CpG island CpG island 1282
Ath11 10 58857699 to 6201945 -52655754 QTL atherosclerosis 11