Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:59029507-60049713

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3rf3 10 58813359 to 59138916 325557 + protein coding gene SH3 domain containing ring finger 3
Tssr93469 10 59085765 to 59085769 4 + TSS region transcription start site region 93469
Tssr93470 10 59136868 to 59136893 25 + TSS region transcription start site region 93470
Tssr3208 10 59136977 to 59136989 12 + TSS region transcription start site region 3208
Tssr93471 10 59136997 to 59137013 16 + TSS region transcription start site region 93471
Sept10 10 59141627 to 59221847 80220 - protein coding gene septin 10
Tssr97645 10 59164541 to 59164542 1 - TSS region transcription start site region 97645
Tssr97646 10 59165264 to 59165267 3 - TSS region transcription start site region 97646
Gm23223 10 59195699 to 59195825 126 + snoRNA gene predicted gene, 23223
Cpgi1567 10 59221177 to 59223400 2223 CpG island CpG island 1567
Tssr97647 10 59221469 to 59221518 49 - TSS region transcription start site region 97647
Tssr97648 10 59221726 to 59221744 18 - TSS region transcription start site region 97648
Tssr97649 10 59221757 to 59221803 46 - TSS region transcription start site region 97649
Tssr93472 10 59221878 to 59221929 51 + TSS region transcription start site region 93472
Tssr93473 10 59221945 to 59221960 15 + TSS region transcription start site region 93473
Sowahc 10 59221953 to 59226434 4481 + protein coding gene sosondowah ankyrin repeat domain family member C
Tssr93474 10 59223511 to 59223524 13 + TSS region transcription start site region 93474
Tssr93475 10 59226009 to 59226056 47 + TSS region transcription start site region 93475
Tssr93476 10 59230072 to 59230076 4 + TSS region transcription start site region 93476
Gm36257 10 59243600 to 59256861 13261 + lncRNA gene predicted gene, 36257
Gm40669 10 59253323 to 59261886 8563 - lncRNA gene predicted gene, 40669
Tssr93477 10 59256871 to 59256876 5 + TSS region transcription start site region 93477
Gm40670 10 59267171 to 59277540 10369 + lncRNA gene predicted gene, 40670
Tssr93478 10 59268315 to 59268333 18 + TSS region transcription start site region 93478
Cpgi1568 10 59280267 to 59280741 474 CpG island CpG island 1568
Tssr97650 10 59322226 to 59322231 5 - TSS region transcription start site region 97650
Cpgi1569 10 59322914 to 59324091 1177 CpG island CpG island 1569
P4ha1 10 59323296 to 59373304 50008 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
Tssr93479 10 59323357 to 59323374 17 + TSS region transcription start site region 93479
Tssr93480 10 59346162 to 59346178 16 + TSS region transcription start site region 93480
Tssr93481 10 59346323 to 59346340 17 + TSS region transcription start site region 93481
Tssr93482 10 59369081 to 59369087 6 + TSS region transcription start site region 93482
Gm10273 10 59395632 to 59396757 1125 + pseudogene predicted pseudogene 10273
Tssr93483 10 59403401 to 59403433 32 + TSS region transcription start site region 93483
Tssr93484 10 59403644 to 59403669 25 + TSS region transcription start site region 93484
Pla2g12b 10 59403660 to 59421976 18316 + protein coding gene phospholipase A2, group XIIB
Tssr93485 10 59403676 to 59403687 11 + TSS region transcription start site region 93485
Oit3 10 59422960 to 59441779 18819 - protein coding gene oncoprotein induced transcript 3
Tssr97651 10 59430999 to 59431038 39 - TSS region transcription start site region 97651
Cpgi1570 10 59435853 to 59436120 267 CpG island CpG island 1570
Tssr97652 10 59438910 to 59438913 3 - TSS region transcription start site region 97652
Tssr97653 10 59441708 to 59441713 5 - TSS region transcription start site region 97653
Tssr97654 10 59441748 to 59441782 34 - TSS region transcription start site region 97654
Gm36318 10 59441753 to 59443885 2132 + lncRNA gene predicted gene, 36318
Tssr97655 10 59441784 to 59441800 16 - TSS region transcription start site region 97655
Tssr97656 10 59441801 to 59441808 7 - TSS region transcription start site region 97656
Tssr97657 10 59441838 to 59441839 1 - TSS region transcription start site region 97657
Tssr97658 10 59441840 to 59441851 11 - TSS region transcription start site region 97658
Tssr97659 10 59441869 to 59441880 11 - TSS region transcription start site region 97659
Mcu 10 59446984 to 59616692 169708 - protein coding gene mitochondrial calcium uniporter
Tssr97660 10 59447986 to 59447989 3 - TSS region transcription start site region 97660
Tssr3209 10 59450866 to 59450867 1 - TSS region transcription start site region 3209
Tssr97661 10 59469453 to 59469460 7 - TSS region transcription start site region 97661
Tssr97662 10 59469463 to 59469475 12 - TSS region transcription start site region 97662
Tssr97663 10 59469490 to 59469497 7 - TSS region transcription start site region 97663
Tssr97664 10 59469500 to 59469509 9 - TSS region transcription start site region 97664
Cpgi1571 10 59503778 to 59504015 237 CpG island CpG island 1571
2510042O18Rik 10 59516799 to 59517677 878 unclassified gene RIKEN cDNA 2510042O18 gene
Cpgi1572 10 59539507 to 59539713 206 CpG island CpG island 1572
Tssr93486 10 59540850 to 59540857 7 + TSS region transcription start site region 93486
Gm40671 10 59575785 to 59582407 6622 + lncRNA gene predicted gene, 40671
Tssr97665 10 59576430 to 59576435 5 - TSS region transcription start site region 97665
Tssr93487 10 59582326 to 59582338 12 + TSS region transcription start site region 93487
Tssr93488 10 59582343 to 59582360 17 + TSS region transcription start site region 93488
Tssr97666 10 59582918 to 59582933 15 - TSS region transcription start site region 97666
Tssr97667 10 59582966 to 59582984 18 - TSS region transcription start site region 97667
Tssr97668 10 59582995 to 59583007 12 - TSS region transcription start site region 97668
Tssr97669 10 59583046 to 59583058 12 - TSS region transcription start site region 97669
Tssr97670 10 59583281 to 59583294 13 - TSS region transcription start site region 97670
Tssr97671 10 59583328 to 59583341 13 - TSS region transcription start site region 97671
Tssr97672 10 59586111 to 59586114 3 - TSS region transcription start site region 97672
Cpgi1573 10 59589979 to 59590192 213 CpG island CpG island 1573
Tssr97673 10 59613143 to 59613148 5 - TSS region transcription start site region 97673
Cpgi1574 10 59615779 to 59616940 1161 CpG island CpG island 1574
Gm10322 10 59616063 to 59616398 335 + protein coding gene predicted gene 10322
Tssr97674 10 59616667 to 59616695 28 - TSS region transcription start site region 97674
Tssr93489 10 59636935 to 59636946 11 + TSS region transcription start site region 93489
Gm40672 10 59664554 to 59687234 22680 - lncRNA gene predicted gene, 40672
Cpgi1575 10 59702264 to 59702941 677 CpG island CpG island 1575
Micu1 10 59702482 to 59864134 161652 + protein coding gene mitochondrial calcium uptake 1
Tssr93490 10 59702558 to 59702628 70 + TSS region transcription start site region 93490
Tssr93491 10 59702629 to 59702643 14 + TSS region transcription start site region 93491
Tssr93492 10 59702645 to 59702663 18 + TSS region transcription start site region 93492
Gm17148 10 59708790 to 59709038 248 + pseudogene predicted gene 17148
Tssr97675 10 59733700 to 59733705 5 - TSS region transcription start site region 97675
Gm17059 10 59799199 to 59800254 1055 - antisense lncRNA gene predicted gene 17059
Tssr97676 10 59800264 to 59800273 9 - TSS region transcription start site region 97676
Gm7399 10 59806557 to 59807414 857 + pseudogene predicted gene 7399
Gm23803 10 59817666 to 59817797 131 - snoRNA gene predicted gene, 23803
Tssr97677 10 59858788 to 59858791 3 - TSS region transcription start site region 97677
Tssr93493 10 59861463 to 59861470 7 + TSS region transcription start site region 93493
Tssr93494 10 59861482 to 59861503 21 + TSS region transcription start site region 93494
Gm7413 10 59871221 to 59871682 461 - pseudogene predicted gene 7413
Tssr97678 10 59875584 to 59875588 4 - TSS region transcription start site region 97678
Cpgi1576 10 59879196 to 59880400 1204 CpG island CpG island 1576
Tssr93495 10 59879569 to 59879613 44 + TSS region transcription start site region 93495
Dnajb12 10 59879591 to 59898016 18425 + protein coding gene DnaJ heat shock protein family (Hsp40) member B12
Tssr93496 10 59879617 to 59879682 65 + TSS region transcription start site region 93496
Gm46226 10 59893882 to 59897762 3880 - lncRNA gene predicted gene, 46226
Tssr93497 10 59899035 to 59899039 4 + TSS region transcription start site region 93497
Cpgi1577 10 59899619 to 59899842 223 CpG island CpG island 1577
Tssr97679 10 59899622 to 59899640 18 - TSS region transcription start site region 97679
Tssr97680 10 59899652 to 59899679 27 - TSS region transcription start site region 97680
Tssr97681 10 59908164 to 59908206 42 - TSS region transcription start site region 97681
Gm40673 10 59909445 to 59922598 13153 + lncRNA gene predicted gene, 40673
Cpgi1578 10 59911543 to 59911837 294 CpG island CpG island 1578
Tssr93498 10 59916829 to 59916844 15 + TSS region transcription start site region 93498
Cpgi1579 10 59920928 to 59921368 440 CpG island CpG island 1579
Tssr93499 10 59932799 to 59932819 20 + TSS region transcription start site region 93499
Cpgi1580 10 59942369 to 59942685 316 CpG island CpG island 1580
Ddit4 10 59949675 to 59951770 2095 - protein coding gene DNA-damage-inducible transcript 4
Tssr97682 10 59950216 to 59950228 12 - TSS region transcription start site region 97682
Cpgi1581 10 59950692 to 59952779 2087 CpG island CpG island 1581
Tssr97683 10 59951481 to 59951497 16 - TSS region transcription start site region 97683
Tssr97684 10 59951517 to 59951528 11 - TSS region transcription start site region 97684
Tssr97685 10 59951547 to 59951559 12 - TSS region transcription start site region 97685
Tssr97686 10 59951731 to 59951742 11 - TSS region transcription start site region 97686
Tssr97687 10 59951753 to 59951775 22 - TSS region transcription start site region 97687
Tssr97688 10 59951824 to 59951840 16 - TSS region transcription start site region 97688
Cpgi1582 10 59970070 to 59970347 277 CpG island CpG island 1582
Anapc16 10 59987409 to 60003129 15720 - protein coding gene anaphase promoting complex subunit 16
Tssr93500 10 60002585 to 60002629 44 + TSS region transcription start site region 93500
Cpgi1583 10 60002618 to 60003557 939 CpG island CpG island 1583
Tssr93501 10 60002800 to 60002809 9 + TSS region transcription start site region 93501
Ascc1 10 60002805 to 60099988 97183 + protein coding gene activating signal cointegrator 1 complex subunit 1
Tssr93502 10 60002816 to 60002851 35 + TSS region transcription start site region 93502
Tssr97689 10 60002973 to 60002984 11 - TSS region transcription start site region 97689
Tssr97690 10 60002993 to 60003004 11 - TSS region transcription start site region 97690
Tssr97691 10 60003034 to 60003048 14 - TSS region transcription start site region 97691
Tssr97692 10 60003056 to 60003136 80 - TSS region transcription start site region 97692
Tssr93503 10 60003220 to 60003277 57 + TSS region transcription start site region 93503
Tssr93504 10 60003321 to 60003343 22 + TSS region transcription start site region 93504
Tssr93505 10 60003383 to 60003392 9 + TSS region transcription start site region 93505
Tssr93506 10 60042085 to 60042117 32 + TSS region transcription start site region 93506
Wght9 10 121000000 to 60000000 -61000000 QTL weight 9