Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:58517595-59197699

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc138 10 58497948 to 58576244 78296 + protein coding gene coiled-coil domain containing 138
Tssr97640 10 58536385 to 58536396 11 - TSS region transcription start site region 97640
Tssr97641 10 58536447 to 58536458 11 - TSS region transcription start site region 97641
C230083P08Rik 10 58545707 to 58548361 2654 unclassified gene RIKEN cDNA C230083P08 gene
Gm18042 10 58555267 to 58556056 789 + pseudogene predicted gene, 18042
Tssr93459 10 58595025 to 58595075 50 + TSS region transcription start site region 93459
D10Lip1 10 58596469 to 58596561 92 DNA segment DNA segment, Chr 10, Lipid Research Laboratory-UCLA 1
Edar 10 58600789 to 58675654 74865 - protein coding gene ectodysplasin-A receptor
Tssr93460 10 58609106 to 58609134 28 + TSS region transcription start site region 93460
Tssr97642 10 58651692 to 58651696 4 - TSS region transcription start site region 97642
Cpgi1565 10 58675507 to 58675886 379 CpG island CpG island 1565
Tssr97643 10 58675631 to 58675654 23 - TSS region transcription start site region 97643
Tssr97644 10 58675689 to 58675713 24 - TSS region transcription start site region 97644
Gm36158 10 58677381 to 58683883 6502 - lncRNA gene predicted gene, 36158
Tssr93461 10 58696725 to 58696754 29 + TSS region transcription start site region 93461
BB019430 10 58696745 to 58704277 7532 + lincRNA gene expressed sequence BB019430
Gm25055 10 58704576 to 58704651 75 - snoRNA gene predicted gene, 25055
Gm17542 10 58713606 to 58718210 4604 - protein coding gene predicted gene, 17542
Gm6494 10 58757370 to 58759471 2101 + pseudogene predicted gene 6494
Cpgi1566 10 58812161 to 58814442 2281 CpG island CpG island 1566
Tssr93462 10 58812337 to 58812352 15 + TSS region transcription start site region 93462
Tssr93463 10 58812359 to 58812409 50 + TSS region transcription start site region 93463
Tssr93464 10 58812475 to 58812495 20 + TSS region transcription start site region 93464
Tssr93465 10 58812566 to 58812600 34 + TSS region transcription start site region 93465
Gm9987 10 58812574 to 58813142 568 - pseudogene predicted gene 9987
Sh3rf3 10 58813359 to 59138916 325557 + protein coding gene SH3 domain containing ring finger 3
Tssr93466 10 58824463 to 58824470 7 + TSS region transcription start site region 93466
Tssr93467 10 58827219 to 58827223 4 + TSS region transcription start site region 93467
D10Mit60 10 58857595 to 58857699 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 60
Ath11 10 58857699 to 6201945 -52655754 QTL atherosclerosis 11
Gm27672 10 58965543 to 58965746 203 + miRNA gene predicted gene, 27672
Tssr93468 10 59016366 to 59016369 3 + TSS region transcription start site region 93468
Tssr93469 10 59085765 to 59085769 4 + TSS region transcription start site region 93469
Tssr93470 10 59136868 to 59136893 25 + TSS region transcription start site region 93470
Tssr3208 10 59136977 to 59136989 12 + TSS region transcription start site region 3208
Tssr93471 10 59136997 to 59137013 16 + TSS region transcription start site region 93471
Sept10 10 59141627 to 59221847 80220 - protein coding gene septin 10
Tssr97645 10 59164541 to 59164542 1 - TSS region transcription start site region 97645
Tssr97646 10 59165264 to 59165267 3 - TSS region transcription start site region 97646
Gm23223 10 59195699 to 59195825 126 + snoRNA gene predicted gene, 23223