Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:58344237-63834683

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920 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq11 10 56604060 to 61105062 4501002 QTL conditioned fear QTL 11
Lims1 10 58323466 to 58424691 101225 + protein coding gene LIM and senescent cell antigen-like domains 1
Gm23058 10 58349498 to 58349604 106 - snRNA gene predicted gene, 23058
Tssr93429 10 58351892 to 58351943 51 + TSS region transcription start site region 93429
Tssr93430 10 58351944 to 58351971 27 + TSS region transcription start site region 93430
Tssr93431 10 58351987 to 58351990 3 + TSS region transcription start site region 93431
Tssr93432 10 58352102 to 58352120 18 + TSS region transcription start site region 93432
Tssr93433 10 58359880 to 58359885 5 + TSS region transcription start site region 93433
Tssr93434 10 58371409 to 58371499 90 + TSS region transcription start site region 93434
Tssr3206 10 58371505 to 58371536 31 + TSS region transcription start site region 3206
Tssr93435 10 58371593 to 58371604 11 + TSS region transcription start site region 93435
Tssr93436 10 58371610 to 58371627 17 + TSS region transcription start site region 93436
Cpgi1562 10 58371616 to 58371786 170 CpG island CpG island 1562
Tssr93437 10 58375146 to 58375165 19 + TSS region transcription start site region 93437
Tssr93438 10 58391467 to 58391502 35 + TSS region transcription start site region 93438
Tssr93439 10 58394361 to 58394380 19 + TSS region transcription start site region 93439
Tssr93440 10 58394381 to 58394395 14 + TSS region transcription start site region 93440
Tssr93441 10 58400509 to 58400515 6 + TSS region transcription start site region 93441
Ltgq1 10 58401504 to 58401504 0 QTL liver triglyceride QTL 1
Tssr93442 10 58407673 to 58407708 35 + TSS region transcription start site region 93442
Tssr93443 10 58418420 to 58418447 27 + TSS region transcription start site region 93443
Tssr93444 10 58421641 to 58421668 27 + TSS region transcription start site region 93444
Tssr93445 10 58422612 to 58422625 13 + TSS region transcription start site region 93445
Cpgi1563 10 58446454 to 58447547 1093 CpG island CpG island 1563
Tssr3207 10 58446677 to 58446726 49 - TSS region transcription start site region 3207
Tssr93446 10 58446740 to 58446743 3 + TSS region transcription start site region 93446
Tssr93447 10 58446824 to 58446835 11 + TSS region transcription start site region 93447
Tssr93448 10 58446845 to 58446928 83 + TSS region transcription start site region 93448
Ranbp2 10 58446852 to 58494155 47303 + protein coding gene RAN binding protein 2
Tssr97639 10 58447377 to 58447431 54 - TSS region transcription start site region 97639
Tssr93449 10 58476322 to 58476337 15 + TSS region transcription start site region 93449
Tssr93450 10 58478284 to 58478303 19 + TSS region transcription start site region 93450
Tssr93451 10 58480023 to 58480050 27 + TSS region transcription start site region 93451
Tssr93452 10 58484042 to 58484051 9 + TSS region transcription start site region 93452
Tssr93453 10 58485753 to 58485764 11 + TSS region transcription start site region 93453
Tssr93454 10 58485880 to 58485885 5 + TSS region transcription start site region 93454
Tssr93455 10 58485989 to 58486003 14 + TSS region transcription start site region 93455
Tssr93456 10 58493060 to 58493100 40 + TSS region transcription start site region 93456
Tssr93457 10 58493769 to 58493820 51 + TSS region transcription start site region 93457
Cpgi1564 10 58497811 to 58498323 512 CpG island CpG island 1564
Tssr93458 10 58497918 to 58497970 52 + TSS region transcription start site region 93458
Ccdc138 10 58497948 to 58576244 78296 + protein coding gene coiled-coil domain containing 138
Tssr97640 10 58536385 to 58536396 11 - TSS region transcription start site region 97640
Tssr97641 10 58536447 to 58536458 11 - TSS region transcription start site region 97641
C230083P08Rik 10 58545707 to 58548361 2654 unclassified gene RIKEN cDNA C230083P08 gene
Gm18042 10 58555267 to 58556056 789 + pseudogene predicted gene, 18042
Tssr93459 10 58595025 to 58595075 50 + TSS region transcription start site region 93459
D10Lip1 10 58596469 to 58596561 92 DNA segment DNA segment, Chr 10, Lipid Research Laboratory-UCLA 1
Edar 10 58600789 to 58675654 74865 - protein coding gene ectodysplasin-A receptor
Tssr93460 10 58609106 to 58609134 28 + TSS region transcription start site region 93460
Tssr97642 10 58651692 to 58651696 4 - TSS region transcription start site region 97642
Cpgi1565 10 58675507 to 58675886 379 CpG island CpG island 1565
Tssr97643 10 58675631 to 58675654 23 - TSS region transcription start site region 97643
Tssr97644 10 58675689 to 58675713 24 - TSS region transcription start site region 97644
Gm36158 10 58677381 to 58683883 6502 - lncRNA gene predicted gene, 36158
Tssr93461 10 58696725 to 58696754 29 + TSS region transcription start site region 93461
BB019430 10 58696745 to 58704277 7532 + lincRNA gene expressed sequence BB019430
Gm25055 10 58704576 to 58704651 75 - snoRNA gene predicted gene, 25055
Gm17542 10 58713606 to 58718210 4604 - protein coding gene predicted gene, 17542
Gm6494 10 58757370 to 58759471 2101 + pseudogene predicted gene 6494
Cpgi1566 10 58812161 to 58814442 2281 CpG island CpG island 1566
Tssr93462 10 58812337 to 58812352 15 + TSS region transcription start site region 93462
Tssr93463 10 58812359 to 58812409 50 + TSS region transcription start site region 93463
Tssr93464 10 58812475 to 58812495 20 + TSS region transcription start site region 93464
Tssr93465 10 58812566 to 58812600 34 + TSS region transcription start site region 93465
Gm9987 10 58812574 to 58813142 568 - pseudogene predicted gene 9987
Sh3rf3 10 58813359 to 59138916 325557 + protein coding gene SH3 domain containing ring finger 3
Tssr93466 10 58824463 to 58824470 7 + TSS region transcription start site region 93466
Tssr93467 10 58827219 to 58827223 4 + TSS region transcription start site region 93467
D10Mit60 10 58857595 to 58857699 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 60
Ath11 10 58857699 to 6201945 -52655754 QTL atherosclerosis 11
Gm27672 10 58965543 to 58965746 203 + miRNA gene predicted gene, 27672
Tssr93468 10 59016366 to 59016369 3 + TSS region transcription start site region 93468
Tssr93469 10 59085765 to 59085769 4 + TSS region transcription start site region 93469
Tssr93470 10 59136868 to 59136893 25 + TSS region transcription start site region 93470
Tssr3208 10 59136977 to 59136989 12 + TSS region transcription start site region 3208
Tssr93471 10 59136997 to 59137013 16 + TSS region transcription start site region 93471
Sept10 10 59141627 to 59221847 80220 - protein coding gene septin 10
Tssr97645 10 59164541 to 59164542 1 - TSS region transcription start site region 97645
Tssr97646 10 59165264 to 59165267 3 - TSS region transcription start site region 97646
Gm23223 10 59195699 to 59195825 126 + snoRNA gene predicted gene, 23223
Cpgi1567 10 59221177 to 59223400 2223 CpG island CpG island 1567
Tssr97647 10 59221469 to 59221518 49 - TSS region transcription start site region 97647
Tssr97648 10 59221726 to 59221744 18 - TSS region transcription start site region 97648
Tssr97649 10 59221757 to 59221803 46 - TSS region transcription start site region 97649
Tssr93472 10 59221878 to 59221929 51 + TSS region transcription start site region 93472
Tssr93473 10 59221945 to 59221960 15 + TSS region transcription start site region 93473
Sowahc 10 59221953 to 59226434 4481 + protein coding gene sosondowah ankyrin repeat domain family member C
Tssr93474 10 59223511 to 59223524 13 + TSS region transcription start site region 93474
Tssr93475 10 59226009 to 59226056 47 + TSS region transcription start site region 93475
Tssr93476 10 59230072 to 59230076 4 + TSS region transcription start site region 93476
Gm36257 10 59243600 to 59256861 13261 + lncRNA gene predicted gene, 36257
Gm40669 10 59253323 to 59261886 8563 - lncRNA gene predicted gene, 40669
Tssr93477 10 59256871 to 59256876 5 + TSS region transcription start site region 93477
Gm40670 10 59267171 to 59277540 10369 + lncRNA gene predicted gene, 40670
Tssr93478 10 59268315 to 59268333 18 + TSS region transcription start site region 93478
Cpgi1568 10 59280267 to 59280741 474 CpG island CpG island 1568
Tssr97650 10 59322226 to 59322231 5 - TSS region transcription start site region 97650
Cpgi1569 10 59322914 to 59324091 1177 CpG island CpG island 1569
P4ha1 10 59323296 to 59373304 50008 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
Tssr93479 10 59323357 to 59323374 17 + TSS region transcription start site region 93479
Tssr93480 10 59346162 to 59346178 16 + TSS region transcription start site region 93480
Tssr93481 10 59346323 to 59346340 17 + TSS region transcription start site region 93481
Tssr93482 10 59369081 to 59369087 6 + TSS region transcription start site region 93482
Gm10273 10 59395632 to 59396757 1125 + pseudogene predicted pseudogene 10273
Tssr93483 10 59403401 to 59403433 32 + TSS region transcription start site region 93483
Tssr93484 10 59403644 to 59403669 25 + TSS region transcription start site region 93484
Pla2g12b 10 59403660 to 59421976 18316 + protein coding gene phospholipase A2, group XIIB
Tssr93485 10 59403676 to 59403687 11 + TSS region transcription start site region 93485
Oit3 10 59422960 to 59441779 18819 - protein coding gene oncoprotein induced transcript 3
Tssr97651 10 59430999 to 59431038 39 - TSS region transcription start site region 97651
Cpgi1570 10 59435853 to 59436120 267 CpG island CpG island 1570
Tssr97652 10 59438910 to 59438913 3 - TSS region transcription start site region 97652
Tssr97653 10 59441708 to 59441713 5 - TSS region transcription start site region 97653
Tssr97654 10 59441748 to 59441782 34 - TSS region transcription start site region 97654
Gm36318 10 59441753 to 59443885 2132 + lncRNA gene predicted gene, 36318
Tssr97655 10 59441784 to 59441800 16 - TSS region transcription start site region 97655
Tssr97656 10 59441801 to 59441808 7 - TSS region transcription start site region 97656
Tssr97657 10 59441838 to 59441839 1 - TSS region transcription start site region 97657
Tssr97658 10 59441840 to 59441851 11 - TSS region transcription start site region 97658
Tssr97659 10 59441869 to 59441880 11 - TSS region transcription start site region 97659
Mcu 10 59446984 to 59616692 169708 - protein coding gene mitochondrial calcium uniporter
Tssr97660 10 59447986 to 59447989 3 - TSS region transcription start site region 97660
Tssr3209 10 59450866 to 59450867 1 - TSS region transcription start site region 3209
Tssr97661 10 59469453 to 59469460 7 - TSS region transcription start site region 97661
Tssr97662 10 59469463 to 59469475 12 - TSS region transcription start site region 97662
Tssr97663 10 59469490 to 59469497 7 - TSS region transcription start site region 97663
Tssr97664 10 59469500 to 59469509 9 - TSS region transcription start site region 97664
Cpgi1571 10 59503778 to 59504015 237 CpG island CpG island 1571
2510042O18Rik 10 59516799 to 59517677 878 unclassified gene RIKEN cDNA 2510042O18 gene
Cpgi1572 10 59539507 to 59539713 206 CpG island CpG island 1572
Tssr93486 10 59540850 to 59540857 7 + TSS region transcription start site region 93486
Gm40671 10 59575785 to 59582407 6622 + lncRNA gene predicted gene, 40671
Tssr97665 10 59576430 to 59576435 5 - TSS region transcription start site region 97665
Tssr93487 10 59582326 to 59582338 12 + TSS region transcription start site region 93487
Tssr93488 10 59582343 to 59582360 17 + TSS region transcription start site region 93488
Tssr97666 10 59582918 to 59582933 15 - TSS region transcription start site region 97666
Tssr97667 10 59582966 to 59582984 18 - TSS region transcription start site region 97667
Tssr97668 10 59582995 to 59583007 12 - TSS region transcription start site region 97668
Tssr97669 10 59583046 to 59583058 12 - TSS region transcription start site region 97669
Tssr97670 10 59583281 to 59583294 13 - TSS region transcription start site region 97670
Tssr97671 10 59583328 to 59583341 13 - TSS region transcription start site region 97671
Tssr97672 10 59586111 to 59586114 3 - TSS region transcription start site region 97672
Cpgi1573 10 59589979 to 59590192 213 CpG island CpG island 1573
Tssr97673 10 59613143 to 59613148 5 - TSS region transcription start site region 97673
Cpgi1574 10 59615779 to 59616940 1161 CpG island CpG island 1574
Gm10322 10 59616063 to 59616398 335 + protein coding gene predicted gene 10322
Tssr97674 10 59616667 to 59616695 28 - TSS region transcription start site region 97674
Tssr93489 10 59636935 to 59636946 11 + TSS region transcription start site region 93489
Gm40672 10 59664554 to 59687234 22680 - lncRNA gene predicted gene, 40672
Cpgi1575 10 59702264 to 59702941 677 CpG island CpG island 1575
Micu1 10 59702482 to 59864134 161652 + protein coding gene mitochondrial calcium uptake 1
Tssr93490 10 59702558 to 59702628 70 + TSS region transcription start site region 93490
Tssr93491 10 59702629 to 59702643 14 + TSS region transcription start site region 93491
Tssr93492 10 59702645 to 59702663 18 + TSS region transcription start site region 93492
Gm17148 10 59708790 to 59709038 248 + pseudogene predicted gene 17148
Tssr97675 10 59733700 to 59733705 5 - TSS region transcription start site region 97675
Gm17059 10 59799199 to 59800254 1055 - antisense lncRNA gene predicted gene 17059
Tssr97676 10 59800264 to 59800273 9 - TSS region transcription start site region 97676
Gm7399 10 59806557 to 59807414 857 + pseudogene predicted gene 7399
Gm23803 10 59817666 to 59817797 131 - snoRNA gene predicted gene, 23803
Tssr97677 10 59858788 to 59858791 3 - TSS region transcription start site region 97677
Tssr93493 10 59861463 to 59861470 7 + TSS region transcription start site region 93493
Tssr93494 10 59861482 to 59861503 21 + TSS region transcription start site region 93494
Gm7413 10 59871221 to 59871682 461 - pseudogene predicted gene 7413
Tssr97678 10 59875584 to 59875588 4 - TSS region transcription start site region 97678
Cpgi1576 10 59879196 to 59880400 1204 CpG island CpG island 1576
Tssr93495 10 59879569 to 59879613 44 + TSS region transcription start site region 93495
Dnajb12 10 59879591 to 59898016 18425 + protein coding gene DnaJ heat shock protein family (Hsp40) member B12
Tssr93496 10 59879617 to 59879682 65 + TSS region transcription start site region 93496
Gm46226 10 59893882 to 59897762 3880 - lncRNA gene predicted gene, 46226
Tssr93497 10 59899035 to 59899039 4 + TSS region transcription start site region 93497
Cpgi1577 10 59899619 to 59899842 223 CpG island CpG island 1577
Tssr97679 10 59899622 to 59899640 18 - TSS region transcription start site region 97679
Tssr97680 10 59899652 to 59899679 27 - TSS region transcription start site region 97680
Tssr97681 10 59908164 to 59908206 42 - TSS region transcription start site region 97681
Gm40673 10 59909445 to 59922598 13153 + lncRNA gene predicted gene, 40673
Cpgi1578 10 59911543 to 59911837 294 CpG island CpG island 1578
Tssr93498 10 59916829 to 59916844 15 + TSS region transcription start site region 93498
Cpgi1579 10 59920928 to 59921368 440 CpG island CpG island 1579
Tssr93499 10 59932799 to 59932819 20 + TSS region transcription start site region 93499
Cpgi1580 10 59942369 to 59942685 316 CpG island CpG island 1580
Ddit4 10 59949675 to 59951770 2095 - protein coding gene DNA-damage-inducible transcript 4
Tssr97682 10 59950216 to 59950228 12 - TSS region transcription start site region 97682
Cpgi1581 10 59950692 to 59952779 2087 CpG island CpG island 1581
Tssr97683 10 59951481 to 59951497 16 - TSS region transcription start site region 97683
Tssr97684 10 59951517 to 59951528 11 - TSS region transcription start site region 97684
Tssr97685 10 59951547 to 59951559 12 - TSS region transcription start site region 97685
Tssr97686 10 59951731 to 59951742 11 - TSS region transcription start site region 97686
Tssr97687 10 59951753 to 59951775 22 - TSS region transcription start site region 97687
Tssr97688 10 59951824 to 59951840 16 - TSS region transcription start site region 97688
Cpgi1582 10 59970070 to 59970347 277 CpG island CpG island 1582
Anapc16 10 59987409 to 60003129 15720 - protein coding gene anaphase promoting complex subunit 16
Tssr93500 10 60002585 to 60002629 44 + TSS region transcription start site region 93500
Cpgi1583 10 60002618 to 60003557 939 CpG island CpG island 1583
Tssr93501 10 60002800 to 60002809 9 + TSS region transcription start site region 93501
Ascc1 10 60002805 to 60099988 97183 + protein coding gene activating signal cointegrator 1 complex subunit 1
Tssr93502 10 60002816 to 60002851 35 + TSS region transcription start site region 93502
Tssr97689 10 60002973 to 60002984 11 - TSS region transcription start site region 97689
Tssr97690 10 60002993 to 60003004 11 - TSS region transcription start site region 97690