Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:57645866-61255867

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540 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq11 10 56604060 to 61105062 4501002 QTL conditioned fear QTL 11
Pkib 10 57631981 to 57741112 109131 + protein coding gene protein kinase inhibitor beta, cAMP dependent, testis specific
Tssr93392 10 57645861 to 57645886 25 + TSS region transcription start site region 93392
Tssr93393 10 57645902 to 57645912 10 + TSS region transcription start site region 93393
Tssr93394 10 57650954 to 57650960 6 + TSS region transcription start site region 93394
Tssr93395 10 57650962 to 57650971 9 + TSS region transcription start site region 93395
Tssr93396 10 57650977 to 57650985 8 + TSS region transcription start site region 93396
Tssr93397 10 57650990 to 57651010 20 + TSS region transcription start site region 93397
Gm18253 10 57657932 to 57658838 906 + pseudogene predicted gene, 18253
Tssr93398 10 57727940 to 57727968 28 + TSS region transcription start site region 93398
Tssr93399 10 57782281 to 57782294 13 + TSS region transcription start site region 93399
Gm5777 10 57782354 to 57782801 447 + pseudogene predicted gene 5777
Tssr93400 10 57784859 to 57784903 44 + TSS region transcription start site region 93400
Tssr93401 10 57784914 to 57784939 25 + TSS region transcription start site region 93401
Fabp7 10 57784923 to 57788450 3527 + protein coding gene fatty acid binding protein 7, brain
Tssr93402 10 57784960 to 57784973 13 + TSS region transcription start site region 93402
Tssr93403 10 57784977 to 57784990 13 + TSS region transcription start site region 93403
Tssr93404 10 57785010 to 57785023 13 + TSS region transcription start site region 93404
Tssr93405 10 57785503 to 57785521 18 + TSS region transcription start site region 93405
Tssr93406 10 57785526 to 57785547 21 + TSS region transcription start site region 93406
Tssr93407 10 57786028 to 57786074 46 + TSS region transcription start site region 93407
Tssr93408 10 57786282 to 57786305 23 + TSS region transcription start site region 93408
Tssr3205 10 57788321 to 57788331 10 + TSS region transcription start site region 3205
Tssr93409 10 57794370 to 57794390 20 + TSS region transcription start site region 93409
Cpgi1555 10 57794516 to 57795040 524 CpG island CpG island 1555
Tssr93410 10 57794527 to 57794528 1 + TSS region transcription start site region 93410
Smpdl3a 10 57794544 to 57811830 17286 + protein coding gene sphingomyelin phosphodiesterase, acid-like 3A
Tssr93411 10 57794548 to 57794569 21 + TSS region transcription start site region 93411
Tssr93412 10 57794571 to 57794664 93 + TSS region transcription start site region 93412
Tssr93413 10 57794665 to 57794672 7 + TSS region transcription start site region 93413
Tssr93414 10 57794683 to 57794717 34 + TSS region transcription start site region 93414
Tssr93415 10 57794729 to 57794750 21 + TSS region transcription start site region 93415
Tssr97638 10 57794801 to 57794815 14 - TSS region transcription start site region 97638
Tssr93416 10 57800994 to 57801006 12 + TSS region transcription start site region 93416
Tssr93417 10 57802414 to 57802432 18 + TSS region transcription start site region 93417
Tssr93418 10 57805604 to 57805618 14 + TSS region transcription start site region 93418
Tssr93419 10 57807351 to 57807370 19 + TSS region transcription start site region 93419
Tssr93420 10 57807900 to 57807933 33 + TSS region transcription start site region 93420
D10Mit286 10 57825198 to 57825322 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 286
Tssr93421 10 58211428 to 58211439 11 + TSS region transcription start site region 93421
AW822073 10 58222972 to 58224930 1958 - protein coding gene expressed sequence AW822073
Cpgi1556 10 58224398 to 58224696 298 CpG island CpG island 1556
Cpgi1557 10 58224995 to 58225431 436 CpG island CpG island 1557
Gm10807 10 58227857 to 58228651 794 - pseudogene predicted gene 10807
Duxf3 10 58229979 to 58232675 2696 - protein coding gene double homeobox family member 3
Cpgi1558 10 58231892 to 58232203 311 CpG island CpG island 1558
Gm4981 10 58234848 to 58236660 1812 - protein coding gene predicted gene 4981
Cpgi1559 10 58236742 to 58236920 178 CpG island CpG island 1559
Gm9919 10 58239034 to 58252702 13668 - unclassified gene predicted gene 9919
Gm19459 10 58239608 to 58240661 1053 - pseudogene predicted gene, 19459
Cpgi1560 10 58255248 to 58255906 658 CpG island CpG island 1560
Tssr93422 10 58255465 to 58255537 72 + TSS region transcription start site region 93422
Gcc2 10 58255497 to 58305599 50102 + protein coding gene GRIP and coiled-coil domain containing 2
2610202C22Rik 10 58284428 to 58285176 748 unclassified gene RIKEN cDNA 2610202C22 gene
Gm40668 10 58307973 to 58312852 4879 + lncRNA gene predicted gene, 40668
Cpgi1561 10 58323099 to 58324073 974 CpG island CpG island 1561
Lims1 10 58323466 to 58424691 101225 + protein coding gene LIM and senescent cell antigen-like domains 1
Tssr93423 10 58323479 to 58323499 20 + TSS region transcription start site region 93423
Tssr93424 10 58323526 to 58323533 7 + TSS region transcription start site region 93424
Tssr93425 10 58323540 to 58323607 67 + TSS region transcription start site region 93425
Tssr93426 10 58324685 to 58324688 3 + TSS region transcription start site region 93426
A130099P19Rik 10 58328684 to 58332951 4267 unclassified gene RIKEN cDNA A130099P19 gene
Tssr93427 10 58328705 to 58328709 4 + TSS region transcription start site region 93427
Tssr93428 10 58332819 to 58332834 15 + TSS region transcription start site region 93428
Gm23058 10 58349498 to 58349604 106 - snRNA gene predicted gene, 23058
Tssr93429 10 58351892 to 58351943 51 + TSS region transcription start site region 93429
Tssr93430 10 58351944 to 58351971 27 + TSS region transcription start site region 93430
Tssr93431 10 58351987 to 58351990 3 + TSS region transcription start site region 93431
Tssr93432 10 58352102 to 58352120 18 + TSS region transcription start site region 93432
Tssr93433 10 58359880 to 58359885 5 + TSS region transcription start site region 93433
Tssr93434 10 58371409 to 58371499 90 + TSS region transcription start site region 93434
Tssr3206 10 58371505 to 58371536 31 + TSS region transcription start site region 3206
Tssr93435 10 58371593 to 58371604 11 + TSS region transcription start site region 93435
Tssr93436 10 58371610 to 58371627 17 + TSS region transcription start site region 93436
Cpgi1562 10 58371616 to 58371786 170 CpG island CpG island 1562
Tssr93437 10 58375146 to 58375165 19 + TSS region transcription start site region 93437
Tssr93438 10 58391467 to 58391502 35 + TSS region transcription start site region 93438
Tssr93439 10 58394361 to 58394380 19 + TSS region transcription start site region 93439
Tssr93440 10 58394381 to 58394395 14 + TSS region transcription start site region 93440
Tssr93441 10 58400509 to 58400515 6 + TSS region transcription start site region 93441
Ltgq1 10 58401504 to 58401504 0 QTL liver triglyceride QTL 1
Tssr93442 10 58407673 to 58407708 35 + TSS region transcription start site region 93442
Tssr93443 10 58418420 to 58418447 27 + TSS region transcription start site region 93443
Tssr93444 10 58421641 to 58421668 27 + TSS region transcription start site region 93444
Tssr93445 10 58422612 to 58422625 13 + TSS region transcription start site region 93445
Cpgi1563 10 58446454 to 58447547 1093 CpG island CpG island 1563
Tssr3207 10 58446677 to 58446726 49 - TSS region transcription start site region 3207
Tssr93446 10 58446740 to 58446743 3 + TSS region transcription start site region 93446
Tssr93447 10 58446824 to 58446835 11 + TSS region transcription start site region 93447
Tssr93448 10 58446845 to 58446928 83 + TSS region transcription start site region 93448
Ranbp2 10 58446852 to 58494155 47303 + protein coding gene RAN binding protein 2
Tssr97639 10 58447377 to 58447431 54 - TSS region transcription start site region 97639
Tssr93449 10 58476322 to 58476337 15 + TSS region transcription start site region 93449
Tssr93450 10 58478284 to 58478303 19 + TSS region transcription start site region 93450
Tssr93451 10 58480023 to 58480050 27 + TSS region transcription start site region 93451
Tssr93452 10 58484042 to 58484051 9 + TSS region transcription start site region 93452
Tssr93453 10 58485753 to 58485764 11 + TSS region transcription start site region 93453
Tssr93454 10 58485880 to 58485885 5 + TSS region transcription start site region 93454
Tssr93455 10 58485989 to 58486003 14 + TSS region transcription start site region 93455
Tssr93456 10 58493060 to 58493100 40 + TSS region transcription start site region 93456
Tssr93457 10 58493769 to 58493820 51 + TSS region transcription start site region 93457
Cpgi1564 10 58497811 to 58498323 512 CpG island CpG island 1564
Tssr93458 10 58497918 to 58497970 52 + TSS region transcription start site region 93458
Ccdc138 10 58497948 to 58576244 78296 + protein coding gene coiled-coil domain containing 138
Tssr97640 10 58536385 to 58536396 11 - TSS region transcription start site region 97640
Tssr97641 10 58536447 to 58536458 11 - TSS region transcription start site region 97641
C230083P08Rik 10 58545707 to 58548361 2654 unclassified gene RIKEN cDNA C230083P08 gene
Gm18042 10 58555267 to 58556056 789 + pseudogene predicted gene, 18042
Tssr93459 10 58595025 to 58595075 50 + TSS region transcription start site region 93459
D10Lip1 10 58596469 to 58596561 92 DNA segment DNA segment, Chr 10, Lipid Research Laboratory-UCLA 1
Edar 10 58600789 to 58675654 74865 - protein coding gene ectodysplasin-A receptor
Tssr93460 10 58609106 to 58609134 28 + TSS region transcription start site region 93460
Tssr97642 10 58651692 to 58651696 4 - TSS region transcription start site region 97642
Cpgi1565 10 58675507 to 58675886 379 CpG island CpG island 1565
Tssr97643 10 58675631 to 58675654 23 - TSS region transcription start site region 97643
Tssr97644 10 58675689 to 58675713 24 - TSS region transcription start site region 97644
Gm36158 10 58677381 to 58683883 6502 - lncRNA gene predicted gene, 36158
Tssr93461 10 58696725 to 58696754 29 + TSS region transcription start site region 93461
BB019430 10 58696745 to 58704277 7532 + lincRNA gene expressed sequence BB019430
Gm25055 10 58704576 to 58704651 75 - snoRNA gene predicted gene, 25055
Gm17542 10 58713606 to 58718210 4604 - protein coding gene predicted gene, 17542
Gm6494 10 58757370 to 58759471 2101 + pseudogene predicted gene 6494
Cpgi1566 10 58812161 to 58814442 2281 CpG island CpG island 1566
Tssr93462 10 58812337 to 58812352 15 + TSS region transcription start site region 93462
Tssr93463 10 58812359 to 58812409 50 + TSS region transcription start site region 93463
Tssr93464 10 58812475 to 58812495 20 + TSS region transcription start site region 93464
Tssr93465 10 58812566 to 58812600 34 + TSS region transcription start site region 93465
Gm9987 10 58812574 to 58813142 568 - pseudogene predicted gene 9987
Sh3rf3 10 58813359 to 59138916 325557 + protein coding gene SH3 domain containing ring finger 3
Tssr93466 10 58824463 to 58824470 7 + TSS region transcription start site region 93466
Tssr93467 10 58827219 to 58827223 4 + TSS region transcription start site region 93467
D10Mit60 10 58857595 to 58857699 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 60
Ath11 10 58857699 to 6201945 -52655754 QTL atherosclerosis 11
Gm27672 10 58965543 to 58965746 203 + miRNA gene predicted gene, 27672
Tssr93468 10 59016366 to 59016369 3 + TSS region transcription start site region 93468
Tssr93469 10 59085765 to 59085769 4 + TSS region transcription start site region 93469
Tssr93470 10 59136868 to 59136893 25 + TSS region transcription start site region 93470
Tssr3208 10 59136977 to 59136989 12 + TSS region transcription start site region 3208
Tssr93471 10 59136997 to 59137013 16 + TSS region transcription start site region 93471
Sept10 10 59141627 to 59221847 80220 - protein coding gene septin 10
Tssr97645 10 59164541 to 59164542 1 - TSS region transcription start site region 97645
Tssr97646 10 59165264 to 59165267 3 - TSS region transcription start site region 97646
Gm23223 10 59195699 to 59195825 126 + snoRNA gene predicted gene, 23223
Cpgi1567 10 59221177 to 59223400 2223 CpG island CpG island 1567
Tssr97647 10 59221469 to 59221518 49 - TSS region transcription start site region 97647
Tssr97648 10 59221726 to 59221744 18 - TSS region transcription start site region 97648
Tssr97649 10 59221757 to 59221803 46 - TSS region transcription start site region 97649
Tssr93472 10 59221878 to 59221929 51 + TSS region transcription start site region 93472
Tssr93473 10 59221945 to 59221960 15 + TSS region transcription start site region 93473
Sowahc 10 59221953 to 59226434 4481 + protein coding gene sosondowah ankyrin repeat domain family member C
Tssr93474 10 59223511 to 59223524 13 + TSS region transcription start site region 93474
Tssr93475 10 59226009 to 59226056 47 + TSS region transcription start site region 93475
Tssr93476 10 59230072 to 59230076 4 + TSS region transcription start site region 93476
Gm36257 10 59243600 to 59256861 13261 + lncRNA gene predicted gene, 36257
Gm40669 10 59253323 to 59261886 8563 - lncRNA gene predicted gene, 40669
Tssr93477 10 59256871 to 59256876 5 + TSS region transcription start site region 93477
Gm40670 10 59267171 to 59277540 10369 + lncRNA gene predicted gene, 40670
Tssr93478 10 59268315 to 59268333 18 + TSS region transcription start site region 93478
Cpgi1568 10 59280267 to 59280741 474 CpG island CpG island 1568
Tssr97650 10 59322226 to 59322231 5 - TSS region transcription start site region 97650
Cpgi1569 10 59322914 to 59324091 1177 CpG island CpG island 1569
P4ha1 10 59323296 to 59373304 50008 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
Tssr93479 10 59323357 to 59323374 17 + TSS region transcription start site region 93479
Tssr93480 10 59346162 to 59346178 16 + TSS region transcription start site region 93480
Tssr93481 10 59346323 to 59346340 17 + TSS region transcription start site region 93481
Tssr93482 10 59369081 to 59369087 6 + TSS region transcription start site region 93482
Gm10273 10 59395632 to 59396757 1125 + pseudogene predicted pseudogene 10273
Tssr93483 10 59403401 to 59403433 32 + TSS region transcription start site region 93483
Tssr93484 10 59403644 to 59403669 25 + TSS region transcription start site region 93484
Pla2g12b 10 59403660 to 59421976 18316 + protein coding gene phospholipase A2, group XIIB
Tssr93485 10 59403676 to 59403687 11 + TSS region transcription start site region 93485
Oit3 10 59422960 to 59441779 18819 - protein coding gene oncoprotein induced transcript 3
Tssr97651 10 59430999 to 59431038 39 - TSS region transcription start site region 97651
Cpgi1570 10 59435853 to 59436120 267 CpG island CpG island 1570
Tssr97652 10 59438910 to 59438913 3 - TSS region transcription start site region 97652
Tssr97653 10 59441708 to 59441713 5 - TSS region transcription start site region 97653
Tssr97654 10 59441748 to 59441782 34 - TSS region transcription start site region 97654
Gm36318 10 59441753 to 59443885 2132 + lncRNA gene predicted gene, 36318
Tssr97655 10 59441784 to 59441800 16 - TSS region transcription start site region 97655
Tssr97656 10 59441801 to 59441808 7 - TSS region transcription start site region 97656
Tssr97657 10 59441838 to 59441839 1 - TSS region transcription start site region 97657
Tssr97658 10 59441840 to 59441851 11 - TSS region transcription start site region 97658
Tssr97659 10 59441869 to 59441880 11 - TSS region transcription start site region 97659
Mcu 10 59446984 to 59616692 169708 - protein coding gene mitochondrial calcium uniporter
Tssr97660 10 59447986 to 59447989 3 - TSS region transcription start site region 97660
Tssr3209 10 59450866 to 59450867 1 - TSS region transcription start site region 3209
Tssr97661 10 59469453 to 59469460 7 - TSS region transcription start site region 97661
Tssr97662 10 59469463 to 59469475 12 - TSS region transcription start site region 97662
Tssr97663 10 59469490 to 59469497 7 - TSS region transcription start site region 97663
Tssr97664 10 59469500 to 59469509 9 - TSS region transcription start site region 97664
Cpgi1571 10 59503778 to 59504015 237 CpG island CpG island 1571
2510042O18Rik 10 59516799 to 59517677 878 unclassified gene RIKEN cDNA 2510042O18 gene
Cpgi1572 10 59539507 to 59539713 206 CpG island CpG island 1572
Tssr93486 10 59540850 to 59540857 7 + TSS region transcription start site region 93486
Gm40671 10 59575785 to 59582407 6622 + lncRNA gene predicted gene, 40671
Tssr97665 10 59576430 to 59576435 5 - TSS region transcription start site region 97665
Tssr93487 10 59582326 to 59582338 12 + TSS region transcription start site region 93487
Tssr93488 10 59582343 to 59582360 17 + TSS region transcription start site region 93488
Tssr97666 10 59582918 to 59582933 15 - TSS region transcription start site region 97666
Tssr97667 10 59582966 to 59582984 18 - TSS region transcription start site region 97667