Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:56440989-60531003

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513 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm36595 10 56431507 to 56475415 43908 + lincRNA gene predicted gene, 36595
Gm9118 10 56497341 to 56498094 753 + pseudogene predicted gene 9118
Tssr93374 10 56504495 to 56504520 25 + TSS region transcription start site region 93374
1700066D14Rik 10 56504500 to 56505286 786 unclassified gene RIKEN cDNA 1700066D14 gene
Tssr93375 10 56504521 to 56504535 14 + TSS region transcription start site region 93375
Tssr93376 10 56504550 to 56504559 9 + TSS region transcription start site region 93376
Cpgi1551 10 56504550 to 56504873 323 CpG island CpG island 1551
Tssr93377 10 56556087 to 56556091 4 + TSS region transcription start site region 93377
Tssr93378 10 56599427 to 56599438 11 + TSS region transcription start site region 93378
Cfq11 10 56604060 to 61105062 4501002 QTL conditioned fear QTL 11
Tssr93379 10 56655925 to 56655938 13 + TSS region transcription start site region 93379
Gm9795 10 56656194 to 56656886 692 + pseudogene predicted pseudogene 9795
D10Mit59 10 56791275 to 56791437 162 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 59
Tssr93380 10 56795680 to 56795690 10 + TSS region transcription start site region 93380
Gm31931 10 56829086 to 56829307 221 - pseudogene predicted gene, 31931
Gm48053 10 56909674 to 56914765 5091 - lincRNA gene predicted gene, 48053
Tssr97623 10 56914532 to 56914575 43 - TSS region transcription start site region 97623
Gm36769 10 56932553 to 56935234 2681 - lncRNA gene predicted gene, 36769
Gm36827 10 56970833 to 56982231 11398 - lincRNA gene predicted gene, 36827
Tssr97624 10 56982098 to 56982103 5 - TSS region transcription start site region 97624
Tssr97625 10 56982130 to 56982137 7 - TSS region transcription start site region 97625
Tssr97626 10 56982158 to 56982168 10 - TSS region transcription start site region 97626
Tssr97627 10 56982179 to 56982203 24 - TSS region transcription start site region 97627
Gm40652 10 57117222 to 57157621 40399 + lincRNA gene predicted gene, 40652
D10Mit127 10 57135859 to 57136007 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 127
Gm24285 10 57174030 to 57174129 99 + snRNA gene predicted gene, 24285
Gm48055 10 57266499 to 57266754 255 - pseudogene predicted gene, 48055
Gm7001 10 57290889 to 57292353 1464 + pseudogene predicted gene 7001
Gm9129 10 57386423 to 57391153 4730 + pseudogene predicted gene 9129
Gm19256 10 57413481 to 57413711 230 - pseudogene predicted gene, 19256
4930467K11Rik 10 57478383 to 57486353 7970 - lincRNA gene RIKEN cDNA 4930467K11 gene
Cpgi1552 10 57485970 to 57487090 1120 CpG island CpG island 1552
Tssr93381 10 57486354 to 57486414 60 + TSS region transcription start site region 93381
Hsf2 10 57486385 to 57513135 26750 + protein coding gene heat shock factor 2
Tssr93382 10 57486418 to 57486454 36 + TSS region transcription start site region 93382
Tssr93383 10 57486511 to 57486520 9 + TSS region transcription start site region 93383
Tssr93384 10 57486528 to 57486535 7 + TSS region transcription start site region 93384
Tssr93385 10 57486538 to 57486545 7 + TSS region transcription start site region 93385
Tssr93386 10 57486570 to 57486575 5 + TSS region transcription start site region 93386
9630030I15Rik 10 57506480 to 57508705 2225 unclassified gene RIKEN cDNA 9630030I15 gene
Tssr93387 10 57512484 to 57512489 5 + TSS region transcription start site region 93387
Serinc1 10 57515774 to 57532529 16755 - protein coding gene serine incorporator 1
Tssr97628 10 57516486 to 57516515 29 - TSS region transcription start site region 97628
Tssr97629 10 57516895 to 57516953 58 - TSS region transcription start site region 97629
Tssr97630 10 57516960 to 57516973 13 - TSS region transcription start site region 97630
Tssr97631 10 57517133 to 57517179 46 - TSS region transcription start site region 97631
Tssr97632 10 57517237 to 57517250 13 - TSS region transcription start site region 97632
Tssr97633 10 57522335 to 57522337 2 - TSS region transcription start site region 97633
Tssr97634 10 57528921 to 57528923 2 - TSS region transcription start site region 97634
Tssr97635 10 57531868 to 57531871 3 - TSS region transcription start site region 97635
Cpgi1553 10 57532024 to 57532711 687 CpG island CpG island 1553
Tssr97636 10 57532416 to 57532487 71 - TSS region transcription start site region 97636
Tssr97637 10 57532489 to 57532517 28 - TSS region transcription start site region 97637
Rpl48-ps1 10 57601393 to 57601948 555 + pseudogene ribosomal protein L48, pseudogene 1
Cpgi1554 10 57631935 to 57632479 544 CpG island CpG island 1554
Pkib 10 57631981 to 57741112 109131 + protein coding gene protein kinase inhibitor beta, cAMP dependent, testis specific
Tssr93388 10 57632046 to 57632060 14 + TSS region transcription start site region 93388
Tssr93389 10 57632062 to 57632101 39 + TSS region transcription start site region 93389
Tssr93390 10 57632108 to 57632120 12 + TSS region transcription start site region 93390
Tssr93391 10 57645838 to 57645857 19 + TSS region transcription start site region 93391
Tssr93392 10 57645861 to 57645886 25 + TSS region transcription start site region 93392
Tssr93393 10 57645902 to 57645912 10 + TSS region transcription start site region 93393
Tssr93394 10 57650954 to 57650960 6 + TSS region transcription start site region 93394
Tssr93395 10 57650962 to 57650971 9 + TSS region transcription start site region 93395
Tssr93396 10 57650977 to 57650985 8 + TSS region transcription start site region 93396
Tssr93397 10 57650990 to 57651010 20 + TSS region transcription start site region 93397
Gm18253 10 57657932 to 57658838 906 + pseudogene predicted gene, 18253
Tssr93398 10 57727940 to 57727968 28 + TSS region transcription start site region 93398
Tssr93399 10 57782281 to 57782294 13 + TSS region transcription start site region 93399
Gm5777 10 57782354 to 57782801 447 + pseudogene predicted gene 5777
Tssr93400 10 57784859 to 57784903 44 + TSS region transcription start site region 93400
Tssr93401 10 57784914 to 57784939 25 + TSS region transcription start site region 93401
Fabp7 10 57784923 to 57788450 3527 + protein coding gene fatty acid binding protein 7, brain
Tssr93402 10 57784960 to 57784973 13 + TSS region transcription start site region 93402
Tssr93403 10 57784977 to 57784990 13 + TSS region transcription start site region 93403
Tssr93404 10 57785010 to 57785023 13 + TSS region transcription start site region 93404
Tssr93405 10 57785503 to 57785521 18 + TSS region transcription start site region 93405
Tssr93406 10 57785526 to 57785547 21 + TSS region transcription start site region 93406
Tssr93407 10 57786028 to 57786074 46 + TSS region transcription start site region 93407
Tssr93408 10 57786282 to 57786305 23 + TSS region transcription start site region 93408
Tssr3205 10 57788321 to 57788331 10 + TSS region transcription start site region 3205
Tssr93409 10 57794370 to 57794390 20 + TSS region transcription start site region 93409
Cpgi1555 10 57794516 to 57795040 524 CpG island CpG island 1555
Tssr93410 10 57794527 to 57794528 1 + TSS region transcription start site region 93410
Smpdl3a 10 57794544 to 57811830 17286 + protein coding gene sphingomyelin phosphodiesterase, acid-like 3A
Tssr93411 10 57794548 to 57794569 21 + TSS region transcription start site region 93411
Tssr93412 10 57794571 to 57794664 93 + TSS region transcription start site region 93412
Tssr93413 10 57794665 to 57794672 7 + TSS region transcription start site region 93413
Tssr93414 10 57794683 to 57794717 34 + TSS region transcription start site region 93414
Tssr93415 10 57794729 to 57794750 21 + TSS region transcription start site region 93415
Tssr97638 10 57794801 to 57794815 14 - TSS region transcription start site region 97638
Tssr93416 10 57800994 to 57801006 12 + TSS region transcription start site region 93416
Tssr93417 10 57802414 to 57802432 18 + TSS region transcription start site region 93417
Tssr93418 10 57805604 to 57805618 14 + TSS region transcription start site region 93418
Tssr93419 10 57807351 to 57807370 19 + TSS region transcription start site region 93419
Tssr93420 10 57807900 to 57807933 33 + TSS region transcription start site region 93420
D10Mit286 10 57825198 to 57825322 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 286
Tssr93421 10 58211428 to 58211439 11 + TSS region transcription start site region 93421
AW822073 10 58222972 to 58224930 1958 - protein coding gene expressed sequence AW822073
Cpgi1556 10 58224398 to 58224696 298 CpG island CpG island 1556
Cpgi1557 10 58224995 to 58225431 436 CpG island CpG island 1557
Gm10807 10 58227857 to 58228651 794 - pseudogene predicted gene 10807
Duxf3 10 58229979 to 58232675 2696 - protein coding gene double homeobox family member 3
Cpgi1558 10 58231892 to 58232203 311 CpG island CpG island 1558
Gm4981 10 58234848 to 58236660 1812 - protein coding gene predicted gene 4981
Cpgi1559 10 58236742 to 58236920 178 CpG island CpG island 1559
Gm9919 10 58239034 to 58252702 13668 - unclassified gene predicted gene 9919
Gm19459 10 58239608 to 58240661 1053 - pseudogene predicted gene, 19459
Cpgi1560 10 58255248 to 58255906 658 CpG island CpG island 1560
Tssr93422 10 58255465 to 58255537 72 + TSS region transcription start site region 93422
Gcc2 10 58255497 to 58305599 50102 + protein coding gene GRIP and coiled-coil domain containing 2
2610202C22Rik 10 58284428 to 58285176 748 unclassified gene RIKEN cDNA 2610202C22 gene
Gm40668 10 58307973 to 58312852 4879 + lncRNA gene predicted gene, 40668
Cpgi1561 10 58323099 to 58324073 974 CpG island CpG island 1561
Lims1 10 58323466 to 58424691 101225 + protein coding gene LIM and senescent cell antigen-like domains 1
Tssr93423 10 58323479 to 58323499 20 + TSS region transcription start site region 93423
Tssr93424 10 58323526 to 58323533 7 + TSS region transcription start site region 93424
Tssr93425 10 58323540 to 58323607 67 + TSS region transcription start site region 93425
Tssr93426 10 58324685 to 58324688 3 + TSS region transcription start site region 93426
A130099P19Rik 10 58328684 to 58332951 4267 unclassified gene RIKEN cDNA A130099P19 gene
Tssr93427 10 58328705 to 58328709 4 + TSS region transcription start site region 93427
Tssr93428 10 58332819 to 58332834 15 + TSS region transcription start site region 93428
Gm23058 10 58349498 to 58349604 106 - snRNA gene predicted gene, 23058
Tssr93429 10 58351892 to 58351943 51 + TSS region transcription start site region 93429
Tssr93430 10 58351944 to 58351971 27 + TSS region transcription start site region 93430
Tssr93431 10 58351987 to 58351990 3 + TSS region transcription start site region 93431
Tssr93432 10 58352102 to 58352120 18 + TSS region transcription start site region 93432
Tssr93433 10 58359880 to 58359885 5 + TSS region transcription start site region 93433
Tssr93434 10 58371409 to 58371499 90 + TSS region transcription start site region 93434
Tssr3206 10 58371505 to 58371536 31 + TSS region transcription start site region 3206
Tssr93435 10 58371593 to 58371604 11 + TSS region transcription start site region 93435
Tssr93436 10 58371610 to 58371627 17 + TSS region transcription start site region 93436
Cpgi1562 10 58371616 to 58371786 170 CpG island CpG island 1562
Tssr93437 10 58375146 to 58375165 19 + TSS region transcription start site region 93437
Tssr93438 10 58391467 to 58391502 35 + TSS region transcription start site region 93438
Tssr93439 10 58394361 to 58394380 19 + TSS region transcription start site region 93439
Tssr93440 10 58394381 to 58394395 14 + TSS region transcription start site region 93440
Tssr93441 10 58400509 to 58400515 6 + TSS region transcription start site region 93441
Ltgq1 10 58401504 to 58401504 0 QTL liver triglyceride QTL 1
Tssr93442 10 58407673 to 58407708 35 + TSS region transcription start site region 93442
Tssr93443 10 58418420 to 58418447 27 + TSS region transcription start site region 93443
Tssr93444 10 58421641 to 58421668 27 + TSS region transcription start site region 93444
Tssr93445 10 58422612 to 58422625 13 + TSS region transcription start site region 93445
Cpgi1563 10 58446454 to 58447547 1093 CpG island CpG island 1563
Tssr3207 10 58446677 to 58446726 49 - TSS region transcription start site region 3207
Tssr93446 10 58446740 to 58446743 3 + TSS region transcription start site region 93446
Tssr93447 10 58446824 to 58446835 11 + TSS region transcription start site region 93447
Tssr93448 10 58446845 to 58446928 83 + TSS region transcription start site region 93448
Ranbp2 10 58446852 to 58494155 47303 + protein coding gene RAN binding protein 2
Tssr97639 10 58447377 to 58447431 54 - TSS region transcription start site region 97639
Tssr93449 10 58476322 to 58476337 15 + TSS region transcription start site region 93449
Tssr93450 10 58478284 to 58478303 19 + TSS region transcription start site region 93450
Tssr93451 10 58480023 to 58480050 27 + TSS region transcription start site region 93451
Tssr93452 10 58484042 to 58484051 9 + TSS region transcription start site region 93452
Tssr93453 10 58485753 to 58485764 11 + TSS region transcription start site region 93453
Tssr93454 10 58485880 to 58485885 5 + TSS region transcription start site region 93454
Tssr93455 10 58485989 to 58486003 14 + TSS region transcription start site region 93455
Tssr93456 10 58493060 to 58493100 40 + TSS region transcription start site region 93456
Tssr93457 10 58493769 to 58493820 51 + TSS region transcription start site region 93457
Cpgi1564 10 58497811 to 58498323 512 CpG island CpG island 1564
Tssr93458 10 58497918 to 58497970 52 + TSS region transcription start site region 93458
Ccdc138 10 58497948 to 58576244 78296 + protein coding gene coiled-coil domain containing 138
Tssr97640 10 58536385 to 58536396 11 - TSS region transcription start site region 97640
Tssr97641 10 58536447 to 58536458 11 - TSS region transcription start site region 97641
C230083P08Rik 10 58545707 to 58548361 2654 unclassified gene RIKEN cDNA C230083P08 gene
Gm18042 10 58555267 to 58556056 789 + pseudogene predicted gene, 18042
Tssr93459 10 58595025 to 58595075 50 + TSS region transcription start site region 93459
D10Lip1 10 58596469 to 58596561 92 DNA segment DNA segment, Chr 10, Lipid Research Laboratory-UCLA 1
Edar 10 58600789 to 58675654 74865 - protein coding gene ectodysplasin-A receptor
Tssr93460 10 58609106 to 58609134 28 + TSS region transcription start site region 93460
Tssr97642 10 58651692 to 58651696 4 - TSS region transcription start site region 97642
Cpgi1565 10 58675507 to 58675886 379 CpG island CpG island 1565
Tssr97643 10 58675631 to 58675654 23 - TSS region transcription start site region 97643
Tssr97644 10 58675689 to 58675713 24 - TSS region transcription start site region 97644
Gm36158 10 58677381 to 58683883 6502 - lncRNA gene predicted gene, 36158
Tssr93461 10 58696725 to 58696754 29 + TSS region transcription start site region 93461
BB019430 10 58696745 to 58704277 7532 + lincRNA gene expressed sequence BB019430
Gm25055 10 58704576 to 58704651 75 - snoRNA gene predicted gene, 25055
Gm17542 10 58713606 to 58718210 4604 - protein coding gene predicted gene, 17542
Gm6494 10 58757370 to 58759471 2101 + pseudogene predicted gene 6494
Cpgi1566 10 58812161 to 58814442 2281 CpG island CpG island 1566
Tssr93462 10 58812337 to 58812352 15 + TSS region transcription start site region 93462
Tssr93463 10 58812359 to 58812409 50 + TSS region transcription start site region 93463
Tssr93464 10 58812475 to 58812495 20 + TSS region transcription start site region 93464
Tssr93465 10 58812566 to 58812600 34 + TSS region transcription start site region 93465
Gm9987 10 58812574 to 58813142 568 - pseudogene predicted gene 9987
Sh3rf3 10 58813359 to 59138916 325557 + protein coding gene SH3 domain containing ring finger 3
Tssr93466 10 58824463 to 58824470 7 + TSS region transcription start site region 93466
Tssr93467 10 58827219 to 58827223 4 + TSS region transcription start site region 93467
D10Mit60 10 58857595 to 58857699 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 60
Ath11 10 58857699 to 6201945 -52655754 QTL atherosclerosis 11
Gm27672 10 58965543 to 58965746 203 + miRNA gene predicted gene, 27672
Tssr93468 10 59016366 to 59016369 3 + TSS region transcription start site region 93468
Tssr93469 10 59085765 to 59085769 4 + TSS region transcription start site region 93469
Tssr93470 10 59136868 to 59136893 25 + TSS region transcription start site region 93470
Tssr3208 10 59136977 to 59136989 12 + TSS region transcription start site region 3208
Tssr93471 10 59136997 to 59137013 16 + TSS region transcription start site region 93471
Sept10 10 59141627 to 59221847 80220 - protein coding gene septin 10
Tssr97645 10 59164541 to 59164542 1 - TSS region transcription start site region 97645
Tssr97646 10 59165264 to 59165267 3 - TSS region transcription start site region 97646