Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:56359030-57989129

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gja1 10 56377300 to 56390419 13119 + protein coding gene gap junction protein, alpha 1
Tssr93359 10 56377323 to 56377338 15 + TSS region transcription start site region 93359
Tssr93360 10 56377413 to 56377424 11 + TSS region transcription start site region 93360
Tssr93361 10 56377436 to 56377455 19 + TSS region transcription start site region 93361
Cpgi1549 10 56378610 to 56379220 610 CpG island CpG island 1549
Tssr97621 10 56378966 to 56378972 6 - TSS region transcription start site region 97621
Tssr93362 10 56379158 to 56379189 31 + TSS region transcription start site region 93362
Tssr93363 10 56380457 to 56380462 5 + TSS region transcription start site region 93363
Tssr93364 10 56386311 to 56386314 3 + TSS region transcription start site region 93364
D10Mit88 10 56386864 to 56387000 136 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 88
Tssr93365 10 56387520 to 56387524 4 + TSS region transcription start site region 93365
Tssr3195 10 56387678 to 56387698 20 + TSS region transcription start site region 3195
Tssr93366 10 56387879 to 56387890 11 + TSS region transcription start site region 93366
Tssr93367 10 56388094 to 56388143 49 + TSS region transcription start site region 93367
Cpgi1550 10 56388257 to 56388669 412 CpG island CpG island 1550
Tssr93368 10 56388265 to 56388294 29 + TSS region transcription start site region 93368
Tssr93369 10 56388354 to 56388363 9 + TSS region transcription start site region 93369
Tssr93370 10 56388399 to 56388408 9 + TSS region transcription start site region 93370
Tssr3196 10 56388509 to 56388529 20 + TSS region transcription start site region 3196
Tssr3197 10 56388856 to 56388873 17 + TSS region transcription start site region 3197
Tssr93371 10 56388978 to 56388996 18 + TSS region transcription start site region 93371
Tssr3198 10 56389015 to 56389025 10 + TSS region transcription start site region 3198
Tssr3199 10 56389074 to 56389079 5 + TSS region transcription start site region 3199
Tssr3200 10 56389139 to 56389158 19 + TSS region transcription start site region 3200
Tssr3201 10 56389231 to 56389263 32 + TSS region transcription start site region 3201
Tssr3202 10 56389331 to 56389376 45 + TSS region transcription start site region 3202
Tssr3203 10 56389392 to 56389418 26 + TSS region transcription start site region 3203
Tssr93372 10 56389465 to 56389479 14 + TSS region transcription start site region 93372
Tssr97622 10 56389550 to 56389580 30 - TSS region transcription start site region 97622
Tssr3204 10 56389696 to 56389715 19 + TSS region transcription start site region 3204
Tssr93373 10 56389790 to 56389798 8 + TSS region transcription start site region 93373
Gm36460 10 56395138 to 56399289 4151 + lncRNA gene predicted gene, 36460
Gm36517 10 56417339 to 56418001 662 - lncRNA gene predicted gene, 36517
Gm36595 10 56431507 to 56475415 43908 + lincRNA gene predicted gene, 36595
4930452L12Rik 10 56436354 to 56437603 1249 - lincRNA gene RIKEN cDNA 4930452L12 gene
Gm9118 10 56497341 to 56498094 753 + pseudogene predicted gene 9118
Tssr93374 10 56504495 to 56504520 25 + TSS region transcription start site region 93374
1700066D14Rik 10 56504500 to 56505286 786 unclassified gene RIKEN cDNA 1700066D14 gene
Tssr93375 10 56504521 to 56504535 14 + TSS region transcription start site region 93375
Tssr93376 10 56504550 to 56504559 9 + TSS region transcription start site region 93376
Cpgi1551 10 56504550 to 56504873 323 CpG island CpG island 1551
Tssr93377 10 56556087 to 56556091 4 + TSS region transcription start site region 93377
Tssr93378 10 56599427 to 56599438 11 + TSS region transcription start site region 93378
Cfq11 10 56604060 to 61105062 4501002 QTL conditioned fear QTL 11
Tssr93379 10 56655925 to 56655938 13 + TSS region transcription start site region 93379
Gm9795 10 56656194 to 56656886 692 + pseudogene predicted pseudogene 9795
D10Mit59 10 56791275 to 56791437 162 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 59
Tssr93380 10 56795680 to 56795690 10 + TSS region transcription start site region 93380
Gm31931 10 56829086 to 56829307 221 - pseudogene predicted gene, 31931
Gm48053 10 56909674 to 56914765 5091 - lincRNA gene predicted gene, 48053
Tssr97623 10 56914532 to 56914575 43 - TSS region transcription start site region 97623
Gm36769 10 56932553 to 56935234 2681 - lncRNA gene predicted gene, 36769
Gm36827 10 56970833 to 56982231 11398 - lincRNA gene predicted gene, 36827
Tssr97624 10 56982098 to 56982103 5 - TSS region transcription start site region 97624
Tssr97625 10 56982130 to 56982137 7 - TSS region transcription start site region 97625
Tssr97626 10 56982158 to 56982168 10 - TSS region transcription start site region 97626
Tssr97627 10 56982179 to 56982203 24 - TSS region transcription start site region 97627
Gm40652 10 57117222 to 57157621 40399 + lincRNA gene predicted gene, 40652
D10Mit127 10 57135859 to 57136007 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 127
Gm24285 10 57174030 to 57174129 99 + snRNA gene predicted gene, 24285
Gm48055 10 57266499 to 57266754 255 - pseudogene predicted gene, 48055
Gm7001 10 57290889 to 57292353 1464 + pseudogene predicted gene 7001
Gm9129 10 57386423 to 57391153 4730 + pseudogene predicted gene 9129
Gm19256 10 57413481 to 57413711 230 - pseudogene predicted gene, 19256
4930467K11Rik 10 57478383 to 57486353 7970 - lincRNA gene RIKEN cDNA 4930467K11 gene
Cpgi1552 10 57485970 to 57487090 1120 CpG island CpG island 1552
Tssr93381 10 57486354 to 57486414 60 + TSS region transcription start site region 93381
Hsf2 10 57486385 to 57513135 26750 + protein coding gene heat shock factor 2
Tssr93382 10 57486418 to 57486454 36 + TSS region transcription start site region 93382
Tssr93383 10 57486511 to 57486520 9 + TSS region transcription start site region 93383
Tssr93384 10 57486528 to 57486535 7 + TSS region transcription start site region 93384
Tssr93385 10 57486538 to 57486545 7 + TSS region transcription start site region 93385
Tssr93386 10 57486570 to 57486575 5 + TSS region transcription start site region 93386
9630030I15Rik 10 57506480 to 57508705 2225 unclassified gene RIKEN cDNA 9630030I15 gene
Tssr93387 10 57512484 to 57512489 5 + TSS region transcription start site region 93387
Serinc1 10 57515774 to 57532529 16755 - protein coding gene serine incorporator 1
Tssr97628 10 57516486 to 57516515 29 - TSS region transcription start site region 97628
Tssr97629 10 57516895 to 57516953 58 - TSS region transcription start site region 97629
Tssr97630 10 57516960 to 57516973 13 - TSS region transcription start site region 97630
Tssr97631 10 57517133 to 57517179 46 - TSS region transcription start site region 97631
Tssr97632 10 57517237 to 57517250 13 - TSS region transcription start site region 97632
Tssr97633 10 57522335 to 57522337 2 - TSS region transcription start site region 97633
Tssr97634 10 57528921 to 57528923 2 - TSS region transcription start site region 97634
Tssr97635 10 57531868 to 57531871 3 - TSS region transcription start site region 97635
Cpgi1553 10 57532024 to 57532711 687 CpG island CpG island 1553
Tssr97636 10 57532416 to 57532487 71 - TSS region transcription start site region 97636
Tssr97637 10 57532489 to 57532517 28 - TSS region transcription start site region 97637
Rpl48-ps1 10 57601393 to 57601948 555 + pseudogene ribosomal protein L48, pseudogene 1
Cpgi1554 10 57631935 to 57632479 544 CpG island CpG island 1554
Pkib 10 57631981 to 57741112 109131 + protein coding gene protein kinase inhibitor beta, cAMP dependent, testis specific
Tssr93388 10 57632046 to 57632060 14 + TSS region transcription start site region 93388
Tssr93389 10 57632062 to 57632101 39 + TSS region transcription start site region 93389
Tssr93390 10 57632108 to 57632120 12 + TSS region transcription start site region 93390
Tssr93391 10 57645838 to 57645857 19 + TSS region transcription start site region 93391
Tssr93392 10 57645861 to 57645886 25 + TSS region transcription start site region 93392
Tssr93393 10 57645902 to 57645912 10 + TSS region transcription start site region 93393
Tssr93394 10 57650954 to 57650960 6 + TSS region transcription start site region 93394
Tssr93395 10 57650962 to 57650971 9 + TSS region transcription start site region 93395
Tssr93396 10 57650977 to 57650985 8 + TSS region transcription start site region 93396
Tssr93397 10 57650990 to 57651010 20 + TSS region transcription start site region 93397
Gm18253 10 57657932 to 57658838 906 + pseudogene predicted gene, 18253
Tssr93398 10 57727940 to 57727968 28 + TSS region transcription start site region 93398
Tssr93399 10 57782281 to 57782294 13 + TSS region transcription start site region 93399
Gm5777 10 57782354 to 57782801 447 + pseudogene predicted gene 5777
Tssr93400 10 57784859 to 57784903 44 + TSS region transcription start site region 93400
Tssr93401 10 57784914 to 57784939 25 + TSS region transcription start site region 93401
Fabp7 10 57784923 to 57788450 3527 + protein coding gene fatty acid binding protein 7, brain
Tssr93402 10 57784960 to 57784973 13 + TSS region transcription start site region 93402
Tssr93403 10 57784977 to 57784990 13 + TSS region transcription start site region 93403
Tssr93404 10 57785010 to 57785023 13 + TSS region transcription start site region 93404
Tssr93405 10 57785503 to 57785521 18 + TSS region transcription start site region 93405
Tssr93406 10 57785526 to 57785547 21 + TSS region transcription start site region 93406
Tssr93407 10 57786028 to 57786074 46 + TSS region transcription start site region 93407
Tssr93408 10 57786282 to 57786305 23 + TSS region transcription start site region 93408
Tssr3205 10 57788321 to 57788331 10 + TSS region transcription start site region 3205
Tssr93409 10 57794370 to 57794390 20 + TSS region transcription start site region 93409
Cpgi1555 10 57794516 to 57795040 524 CpG island CpG island 1555
Tssr93410 10 57794527 to 57794528 1 + TSS region transcription start site region 93410
Smpdl3a 10 57794544 to 57811830 17286 + protein coding gene sphingomyelin phosphodiesterase, acid-like 3A
Tssr93411 10 57794548 to 57794569 21 + TSS region transcription start site region 93411
Tssr93412 10 57794571 to 57794664 93 + TSS region transcription start site region 93412
Tssr93413 10 57794665 to 57794672 7 + TSS region transcription start site region 93413
Tssr93414 10 57794683 to 57794717 34 + TSS region transcription start site region 93414
Tssr93415 10 57794729 to 57794750 21 + TSS region transcription start site region 93415
Tssr97638 10 57794801 to 57794815 14 - TSS region transcription start site region 97638
Tssr93416 10 57800994 to 57801006 12 + TSS region transcription start site region 93416
Tssr93417 10 57802414 to 57802432 18 + TSS region transcription start site region 93417
Tssr93418 10 57805604 to 57805618 14 + TSS region transcription start site region 93418
Tssr93419 10 57807351 to 57807370 19 + TSS region transcription start site region 93419
Tssr93420 10 57807900 to 57807933 33 + TSS region transcription start site region 93420
D10Mit286 10 57825198 to 57825322 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 286