Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:5617341-6227384

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr92289 10 5639210 to 5639225 15 + TSS region transcription start site region 92289
Vip 10 5639218 to 5647617 8399 + protein coding gene vasoactive intestinal polypeptide
Tssr92290 10 5664195 to 5664198 3 + TSS region transcription start site region 92290
Tssr96559 10 5712002 to 5712009 7 - TSS region transcription start site region 96559
Gm40595 10 5721485 to 5724198 2713 + protein coding gene predicted gene, 40595
Gm47679 10 5735819 to 5736938 1119 + pseudogene predicted gene, 47679
Gm30617 10 5784832 to 5791511 6679 - lncRNA gene predicted gene, 30617
Fbxo5 10 5799158 to 5805465 6307 - protein coding gene F-box protein 5
Tssr96560 10 5804598 to 5804623 25 - TSS region transcription start site region 96560
Cpgi1259 10 5804673 to 5806230 1557 CpG island CpG island 1259
Tssr96561 10 5805353 to 5805364 11 - TSS region transcription start site region 96561
Tssr96562 10 5805394 to 5805408 14 - TSS region transcription start site region 96562
Tssr96563 10 5805412 to 5805454 42 - TSS region transcription start site region 96563
D10Mit1009 10 5807258 to 5807352 94 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1009
Mtrf1l 10 5811887 to 5823910 12023 - protein coding gene mitochondrial translational release factor 1-like
Cpgi1258 10 5823344 to 5824493 1149 CpG island CpG island 1258
Tssr96564 10 5823819 to 5823873 54 - TSS region transcription start site region 96564
Tssr96565 10 5823880 to 5823937 57 - TSS region transcription start site region 96565
Rgs17 10 5825663 to 5922400 96737 - protein coding gene regulator of G-protein signaling 17
Tssr96566 10 5828020 to 5828034 14 - TSS region transcription start site region 96566
Tssr96567 10 5828097 to 5828108 11 - TSS region transcription start site region 96567
Gm18902 10 5848464 to 5849565 1101 - pseudogene predicted gene, 18902
Cpgi1257 10 5921375 to 5922806 1431 CpG island CpG island 1257
Tssr96568 10 5922325 to 5922328 3 - TSS region transcription start site region 96568
Tssr96569 10 5922341 to 5922384 43 - TSS region transcription start site region 96569
Tssr96570 10 5922385 to 5922407 22 - TSS region transcription start site region 96570
Cpgi1256 10 6035834 to 6036134 300 CpG island CpG island 1256
D10Mit49 10 6201945 to 6202049 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 49
Ath11 10 58857699 to 6201945 -52655754 QTL atherosclerosis 11