Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:5420834-6651134

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syne1 10 5020192 to 5550692 530500 - protein coding gene spectrin repeat containing, nuclear envelope 1
Tssr96540 10 5424331 to 5424356 25 - TSS region transcription start site region 96540
Tssr96541 10 5424372 to 5424382 10 - TSS region transcription start site region 96541
Gm40594 10 5468718 to 5472634 3916 + lncRNA gene predicted gene, 40594
Tssr96542 10 5488188 to 5488195 7 - TSS region transcription start site region 96542
Tssr96543 10 5488200 to 5488237 37 - TSS region transcription start site region 96543
Tssr96544 10 5488243 to 5488255 12 - TSS region transcription start site region 96544
Tssr96545 10 5488267 to 5488289 22 - TSS region transcription start site region 96545
Tssr96546 10 5514120 to 5514124 4 - TSS region transcription start site region 96546
Tssr96547 10 5548684 to 5548723 39 - TSS region transcription start site region 96547
Tssr92282 10 5548716 to 5548718 2 + TSS region transcription start site region 92282
Tssr92283 10 5548799 to 5548833 34 + TSS region transcription start site region 92283
Cpgi1260 10 5550112 to 5550964 852 CpG island CpG island 1260
Tssr96548 10 5550128 to 5550138 10 - TSS region transcription start site region 96548
Tssr96549 10 5550141 to 5550163 22 - TSS region transcription start site region 96549
Tssr96550 10 5550549 to 5550562 13 - TSS region transcription start site region 96550
Tssr96551 10 5550565 to 5550598 33 - TSS region transcription start site region 96551
Tssr96552 10 5550599 to 5550613 14 - TSS region transcription start site region 96552
Tssr96553 10 5550615 to 5550631 16 - TSS region transcription start site region 96553
Tssr96554 10 5550636 to 5550706 70 - TSS region transcription start site region 96554
Tssr96555 10 5550708 to 5550735 27 - TSS region transcription start site region 96555
Tssr96556 10 5550798 to 5550807 9 - TSS region transcription start site region 96556
Tssr96557 10 5550809 to 5550835 26 - TSS region transcription start site region 96557
Tssr3121 10 5550851 to 5550868 17 - TSS region transcription start site region 3121
Tssr164703 10 5557246 to 5557247 1 - TSS region transcription start site region 164703
Tssr96558 10 5593517 to 5593524 7 - TSS region transcription start site region 96558
Tssr3122 10 5593541 to 5593550 9 - TSS region transcription start site region 3122
Tssr92284 10 5593718 to 5593739 21 + TSS region transcription start site region 92284
Myct1 10 5593728 to 5606789 13061 + protein coding gene myc target 1
Tssr92285 10 5593764 to 5593809 45 + TSS region transcription start site region 92285
Tssr92286 10 5593810 to 5593821 11 + TSS region transcription start site region 92286
Tssr92287 10 5593823 to 5593855 32 + TSS region transcription start site region 92287
Tssr92288 10 5594772 to 5594775 3 + TSS region transcription start site region 92288
Tssr92289 10 5639210 to 5639225 15 + TSS region transcription start site region 92289
Vip 10 5639218 to 5647617 8399 + protein coding gene vasoactive intestinal polypeptide
Tssr92290 10 5664195 to 5664198 3 + TSS region transcription start site region 92290
Tssr96559 10 5712002 to 5712009 7 - TSS region transcription start site region 96559
Gm40595 10 5721485 to 5724198 2713 + protein coding gene predicted gene, 40595
Gm47679 10 5735819 to 5736938 1119 + pseudogene predicted gene, 47679
Gm30617 10 5784832 to 5791511 6679 - lncRNA gene predicted gene, 30617
Fbxo5 10 5799158 to 5805465 6307 - protein coding gene F-box protein 5
Tssr96560 10 5804598 to 5804623 25 - TSS region transcription start site region 96560
Cpgi1259 10 5804673 to 5806230 1557 CpG island CpG island 1259
Tssr96561 10 5805353 to 5805364 11 - TSS region transcription start site region 96561
Tssr96562 10 5805394 to 5805408 14 - TSS region transcription start site region 96562
Tssr96563 10 5805412 to 5805454 42 - TSS region transcription start site region 96563
D10Mit1009 10 5807258 to 5807352 94 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1009
Mtrf1l 10 5811887 to 5823910 12023 - protein coding gene mitochondrial translational release factor 1-like
Cpgi1258 10 5823344 to 5824493 1149 CpG island CpG island 1258
Tssr96564 10 5823819 to 5823873 54 - TSS region transcription start site region 96564
Tssr96565 10 5823880 to 5823937 57 - TSS region transcription start site region 96565
Rgs17 10 5825663 to 5922400 96737 - protein coding gene regulator of G-protein signaling 17
Tssr96566 10 5828020 to 5828034 14 - TSS region transcription start site region 96566
Tssr96567 10 5828097 to 5828108 11 - TSS region transcription start site region 96567
Gm18902 10 5848464 to 5849565 1101 - pseudogene predicted gene, 18902
Cpgi1257 10 5921375 to 5922806 1431 CpG island CpG island 1257
Tssr96568 10 5922325 to 5922328 3 - TSS region transcription start site region 96568
Tssr96569 10 5922341 to 5922384 43 - TSS region transcription start site region 96569
Tssr96570 10 5922385 to 5922407 22 - TSS region transcription start site region 96570
Cpgi1256 10 6035834 to 6036134 300 CpG island CpG island 1256
D10Mit49 10 6201945 to 6202049 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 49
Gm3213 10 6367676 to 6368484 808 + protein coding gene predicted gene 3213
Gm46187 10 6401565 to 6404977 3412 + pseudogene predicted gene, 46187
Gm47755 10 6422698 to 6422884 186 + pseudogene predicted gene, 47755
Gm4921 10 6525883 to 6526874 991 - pseudogene predicted gene 4921
Ath11 10 58857699 to 6201945 -52655754 QTL atherosclerosis 11