Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:53836225-54786331

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Man1a 10 53904785 to 54076547 171762 - protein coding gene mannosidase 1, alpha
Tssr97599 10 53906421 to 53906438 17 - TSS region transcription start site region 97599
Tssr97600 10 53913672 to 53913677 5 - TSS region transcription start site region 97600
Tssr97601 10 53932832 to 53932833 1 - TSS region transcription start site region 97601
9530009G21Rik 10 53946245 to 53953024 6779 unclassified gene RIKEN cDNA 9530009G21 gene
Tssr97602 10 53957371 to 53957380 9 - TSS region transcription start site region 97602
Tssr93343 10 53959281 to 53959319 38 + TSS region transcription start site region 93343
Tssr97603 10 53993769 to 53993776 7 - TSS region transcription start site region 97603
Tssr97604 10 53993784 to 53993804 20 - TSS region transcription start site region 97604
Tssr97605 10 53993809 to 53993820 11 - TSS region transcription start site region 97605
A030011A13Rik 10 54007006 to 54010451 3445 unclassified gene RIKEN cDNA A030011A13 gene
Tssr97606 10 54014545 to 54014556 11 - TSS region transcription start site region 97606
Tssr97607 10 54061703 to 54061722 19 - TSS region transcription start site region 97607
Tssr97608 10 54061822 to 54061839 17 - TSS region transcription start site region 97608
Gm47917 10 54063811 to 54065069 1258 + antisense lncRNA gene predicted gene, 47917
Tssr93344 10 54074020 to 54074027 7 + TSS region transcription start site region 93344
Cpgi1546 10 54074137 to 54076352 2215 CpG island CpG island 1546
Tssr93345 10 54074509 to 54074524 15 + TSS region transcription start site region 93345
Tssr93346 10 54074537 to 54074572 35 + TSS region transcription start site region 93346
Tssr97609 10 54075702 to 54075718 16 - TSS region transcription start site region 97609
Tssr97610 10 54075730 to 54075751 21 - TSS region transcription start site region 97610
Gm16998 10 54075922 to 54081081 5159 + bidirectional promoter lncRNA gene predicted gene, 16998
Tssr97611 10 54076581 to 54076620 39 - TSS region transcription start site region 97611
Tssr93347 10 54118056 to 54118071 15 + TSS region transcription start site region 93347
Tssr93348 10 54118073 to 54118084 11 + TSS region transcription start site region 93348
Tssr93349 10 54118114 to 54118126 12 + TSS region transcription start site region 93349
Tssr93350 10 54118133 to 54118151 18 + TSS region transcription start site region 93350
Tssr3193 10 54119447 to 54119464 17 + TSS region transcription start site region 3193
Tssr3194 10 54160704 to 54160708 4 - TSS region transcription start site region 3194
Gm40651 10 54165171 to 54228819 63648 + lncRNA gene predicted gene, 40651
Gm47967 10 54211734 to 54212823 1089 + pseudogene predicted gene, 47967
Gm47968 10 54212871 to 54216723 3852 + pseudogene predicted gene, 47968
Gm26177 10 54311225 to 54311331 106 - snRNA gene predicted gene, 26177
D10Mit90 10 54341289 to 54341514 225 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 90
Gm36335 10 54343992 to 54365223 21231 - lncRNA gene predicted gene, 36335
D10Nds3 10 54384381 to 54384470 89 DNA segment DNA segment, Chr 10, Nuffield Department of Surgery 3
Tssr93351 10 54579288 to 54579311 23 + TSS region transcription start site region 93351
Gm47970 10 54670792 to 54671704 912 - pseudogene predicted gene, 47970
D10Ertd494e 10 54678920 to 54679138 218 DNA segment DNA segment, Chr 10, ERATO Doi 494, expressed
Gm25602 10 54712976 to 54713037 61 - snRNA gene predicted gene, 25602