Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:53426961-53779225

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xiaf3 10 11642896 to 53772211 42129315 heritable phenotypic marker X inactivation autosomal factor 3
fsq 10 43656132 to 53772211 10116079 heritable phenotypic marker flying squirrel
D10Mit219 10 53440706 to 53440830 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 219
Tssr93327 10 53467940 to 53467946 6 + TSS region transcription start site region 93327
Tssr93328 10 53471523 to 53471529 6 + TSS region transcription start site region 93328
Tmem229b-ps 10 53474964 to 53475469 505 + pseudogene transmembrane protein 229B, pseudogene
Gm36280 10 53488240 to 53510407 22167 + lncRNA gene predicted gene, 36280
Tssr93329 10 53488270 to 53488278 8 + TSS region transcription start site region 93329
Gm20597 10 53498443 to 53518989 20546 - lincRNA gene predicted gene, 20597
Gm40650 10 53511143 to 53514526 3383 + lincRNA gene predicted gene, 40650
Tssr97592 10 53519700 to 53519718 18 - TSS region transcription start site region 97592
Tssr93330 10 53525975 to 53525980 5 + TSS region transcription start site region 93330
Gm47722 10 53529657 to 53530185 528 - pseudogene predicted gene, 47722
Mcm9 10 53536315 to 53630439 94124 - protein coding gene minichromosome maintenance 9 homologous recombination repair factor
Gm47738 10 53569669 to 53571582 1913 + antisense lncRNA gene predicted gene, 47738
Gm47739 10 53570625 to 53575756 5131 - sense intronic lncRNA gene predicted gene, 47739
Tssr93331 10 53580425 to 53580430 5 + TSS region transcription start site region 93331
Gm47737 10 53592817 to 53593124 307 - unclassified gene predicted gene, 47737
Tssr93332 10 53595911 to 53595914 3 + TSS region transcription start site region 93332
Cpgi1543 10 53596393 to 53597998 1605 CpG island CpG island 1543
Del(10Mcm9-Asf1a)1Byg 10 53596600 to 53620013 23413 chromosomal deletion gene trap XE518 induced deletion 1, BayGenomics
Tssr93333 10 53596795 to 53596808 13 + TSS region transcription start site region 93333
Tssr93334 10 53596815 to 53596826 11 + TSS region transcription start site region 93334
Tssr93335 10 53596844 to 53596853 9 + TSS region transcription start site region 93335
Tssr93336 10 53596886 to 53596898 12 + TSS region transcription start site region 93336
Tssr93337 10 53596923 to 53596934 11 + TSS region transcription start site region 93337
Tssr93338 10 53596936 to 53597004 68 + TSS region transcription start site region 93338
Asf1a 10 53596961 to 53609225 12264 + protein coding gene anti-silencing function 1A histone chaperone
Tssr93339 10 53597014 to 53597021 7 + TSS region transcription start site region 93339
Tssr93340 10 53597060 to 53597075 15 + TSS region transcription start site region 93340
Tssr93341 10 53597110 to 53597119 9 + TSS region transcription start site region 93341
Gm3902 10 53597378 to 53598402 1024 + unclassified gene predicted gene 3902
4930466K18Rik 10 53614369 to 53615274 905 + unclassified gene RIKEN cDNA 4930466K18 gene
Cpgi1544 10 53629275 to 53630321 1046 CpG island CpG island 1544
Tssr97593 10 53629942 to 53629981 39 - TSS region transcription start site region 97593
Tssr97594 10 53629987 to 53630022 35 - TSS region transcription start site region 97594
Tssr97595 10 53631689 to 53631690 1 - TSS region transcription start site region 97595
Fam184a 10 53633145 to 53751123 117978 - protein coding gene family with sequence similarity 184, member A
B930046M08Rik 10 53635456 to 53660216 24760 unclassified non-coding RNA gene RIKEN cDNA B930046M08 gene
Tssr93342 10 53635461 to 53635476 15 + TSS region transcription start site region 93342
Cpgi1545 10 53750412 to 53751662 1250 CpG island CpG island 1545
Tssr97596 10 53751093 to 53751164 71 - TSS region transcription start site region 97596
Tssr97597 10 53751178 to 53751191 13 - TSS region transcription start site region 97597
Tssr97598 10 53751194 to 53751266 72 - TSS region transcription start site region 97598
nmf347 10 53772094 to 67012618 13240524 heritable phenotypic marker neuroscience mutagenesis facility, 347
nmf172 10 53772094 to 67012618 13240524 heritable phenotypic marker neuroscience mutagenesis facility, 172
D10Mit138 10 53772094 to 53772211 117 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 138