Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:53409362-56839788

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xiaf3 10 11642896 to 53772211 42129315 heritable phenotypic marker X inactivation autosomal factor 3
Mbis2 10 20407439 to 56155127 35747688 QTL Mycobacterium bovis-induced systemic lupus erythematosus 2
fsq 10 43656132 to 53772211 10116079 heritable phenotypic marker flying squirrel
Gm36229 10 53409882 to 53424272 14390 + lincRNA gene predicted gene, 36229
D10Mit219 10 53440706 to 53440830 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 219
Tssr93327 10 53467940 to 53467946 6 + TSS region transcription start site region 93327
Tssr93328 10 53471523 to 53471529 6 + TSS region transcription start site region 93328
Tmem229b-ps 10 53474964 to 53475469 505 + pseudogene transmembrane protein 229B, pseudogene
Gm36280 10 53488240 to 53510407 22167 + lncRNA gene predicted gene, 36280
Tssr93329 10 53488270 to 53488278 8 + TSS region transcription start site region 93329
Gm20597 10 53498443 to 53518989 20546 - lincRNA gene predicted gene, 20597
Gm40650 10 53511143 to 53514526 3383 + lincRNA gene predicted gene, 40650
Tssr97592 10 53519700 to 53519718 18 - TSS region transcription start site region 97592
Tssr93330 10 53525975 to 53525980 5 + TSS region transcription start site region 93330
Gm47722 10 53529657 to 53530185 528 - pseudogene predicted gene, 47722
Mcm9 10 53536315 to 53630439 94124 - protein coding gene minichromosome maintenance 9 homologous recombination repair factor
Gm47738 10 53569669 to 53571582 1913 + antisense lncRNA gene predicted gene, 47738
Gm47739 10 53570625 to 53575756 5131 - sense intronic lncRNA gene predicted gene, 47739
Tssr93331 10 53580425 to 53580430 5 + TSS region transcription start site region 93331
Gm47737 10 53592817 to 53593124 307 - unclassified gene predicted gene, 47737
Tssr93332 10 53595911 to 53595914 3 + TSS region transcription start site region 93332
Cpgi1543 10 53596393 to 53597998 1605 CpG island CpG island 1543
Del(10Mcm9-Asf1a)1Byg 10 53596600 to 53620013 23413 chromosomal deletion gene trap XE518 induced deletion 1, BayGenomics
Tssr93333 10 53596795 to 53596808 13 + TSS region transcription start site region 93333
Tssr93334 10 53596815 to 53596826 11 + TSS region transcription start site region 93334
Tssr93335 10 53596844 to 53596853 9 + TSS region transcription start site region 93335
Tssr93336 10 53596886 to 53596898 12 + TSS region transcription start site region 93336
Tssr93337 10 53596923 to 53596934 11 + TSS region transcription start site region 93337
Tssr93338 10 53596936 to 53597004 68 + TSS region transcription start site region 93338
Asf1a 10 53596961 to 53609225 12264 + protein coding gene anti-silencing function 1A histone chaperone
Tssr93339 10 53597014 to 53597021 7 + TSS region transcription start site region 93339
Tssr93340 10 53597060 to 53597075 15 + TSS region transcription start site region 93340
Tssr93341 10 53597110 to 53597119 9 + TSS region transcription start site region 93341
Gm3902 10 53597378 to 53598402 1024 + unclassified gene predicted gene 3902
4930466K18Rik 10 53614369 to 53615274 905 + unclassified gene RIKEN cDNA 4930466K18 gene
Cpgi1544 10 53629275 to 53630321 1046 CpG island CpG island 1544
Tssr97593 10 53629942 to 53629981 39 - TSS region transcription start site region 97593
Tssr97594 10 53629987 to 53630022 35 - TSS region transcription start site region 97594
Tssr97595 10 53631689 to 53631690 1 - TSS region transcription start site region 97595
Fam184a 10 53633145 to 53751123 117978 - protein coding gene family with sequence similarity 184, member A
B930046M08Rik 10 53635456 to 53660216 24760 unclassified non-coding RNA gene RIKEN cDNA B930046M08 gene
Tssr93342 10 53635461 to 53635476 15 + TSS region transcription start site region 93342
Cpgi1545 10 53750412 to 53751662 1250 CpG island CpG island 1545
Tssr97596 10 53751093 to 53751164 71 - TSS region transcription start site region 97596
Tssr97597 10 53751178 to 53751191 13 - TSS region transcription start site region 97597
Tssr97598 10 53751194 to 53751266 72 - TSS region transcription start site region 97598
nmf347 10 53772094 to 67012618 13240524 heritable phenotypic marker neuroscience mutagenesis facility, 347
D10Mit138 10 53772094 to 53772211 117 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 138
nmf172 10 53772094 to 67012618 13240524 heritable phenotypic marker neuroscience mutagenesis facility, 172
Gm47915 10 53798024 to 53803529 5505 - lincRNA gene predicted gene, 47915
Man1a 10 53904785 to 54076547 171762 - protein coding gene mannosidase 1, alpha
Tssr97599 10 53906421 to 53906438 17 - TSS region transcription start site region 97599
Tssr97600 10 53913672 to 53913677 5 - TSS region transcription start site region 97600
Tssr97601 10 53932832 to 53932833 1 - TSS region transcription start site region 97601
9530009G21Rik 10 53946245 to 53953024 6779 unclassified gene RIKEN cDNA 9530009G21 gene
Tssr97602 10 53957371 to 53957380 9 - TSS region transcription start site region 97602
Tssr93343 10 53959281 to 53959319 38 + TSS region transcription start site region 93343
Tssr97603 10 53993769 to 53993776 7 - TSS region transcription start site region 97603
Tssr97604 10 53993784 to 53993804 20 - TSS region transcription start site region 97604
Tssr97605 10 53993809 to 53993820 11 - TSS region transcription start site region 97605
A030011A13Rik 10 54007006 to 54010451 3445 unclassified gene RIKEN cDNA A030011A13 gene
Tssr97606 10 54014545 to 54014556 11 - TSS region transcription start site region 97606
Tssr97607 10 54061703 to 54061722 19 - TSS region transcription start site region 97607
Tssr97608 10 54061822 to 54061839 17 - TSS region transcription start site region 97608
Gm47917 10 54063811 to 54065069 1258 + antisense lncRNA gene predicted gene, 47917
Tssr93344 10 54074020 to 54074027 7 + TSS region transcription start site region 93344
Cpgi1546 10 54074137 to 54076352 2215 CpG island CpG island 1546
Tssr93345 10 54074509 to 54074524 15 + TSS region transcription start site region 93345
Tssr93346 10 54074537 to 54074572 35 + TSS region transcription start site region 93346
Tssr97609 10 54075702 to 54075718 16 - TSS region transcription start site region 97609
Tssr97610 10 54075730 to 54075751 21 - TSS region transcription start site region 97610
Gm16998 10 54075922 to 54081081 5159 + bidirectional promoter lncRNA gene predicted gene, 16998
Tssr97611 10 54076581 to 54076620 39 - TSS region transcription start site region 97611
Tssr93347 10 54118056 to 54118071 15 + TSS region transcription start site region 93347
Tssr93348 10 54118073 to 54118084 11 + TSS region transcription start site region 93348
Tssr93349 10 54118114 to 54118126 12 + TSS region transcription start site region 93349
Tssr93350 10 54118133 to 54118151 18 + TSS region transcription start site region 93350
Tssr3193 10 54119447 to 54119464 17 + TSS region transcription start site region 3193
Tssr3194 10 54160704 to 54160708 4 - TSS region transcription start site region 3194
Gm40651 10 54165171 to 54228819 63648 + lncRNA gene predicted gene, 40651
Gm47967 10 54211734 to 54212823 1089 + pseudogene predicted gene, 47967
Gm47968 10 54212871 to 54216723 3852 + pseudogene predicted gene, 47968
Gm26177 10 54311225 to 54311331 106 - snRNA gene predicted gene, 26177
D10Mit90 10 54341289 to 54341514 225 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 90
Gm36335 10 54343992 to 54365223 21231 - lncRNA gene predicted gene, 36335
D10Nds3 10 54384381 to 54384470 89 DNA segment DNA segment, Chr 10, Nuffield Department of Surgery 3
Tssr93351 10 54579288 to 54579311 23 + TSS region transcription start site region 93351
Gm47970 10 54670792 to 54671704 912 - pseudogene predicted gene, 47970
D10Ertd494e 10 54678920 to 54679138 218 DNA segment DNA segment, Chr 10, ERATO Doi 494, expressed
Gm25602 10 54712976 to 54713037 61 - snRNA gene predicted gene, 25602
D10Mit171.2 10 54974411 to 54974539 128 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 171.2
D10Mit171 10 54974515 to 54974663 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 171
Gm31849 10 55057202 to 55057570 368 + pseudogene predicted gene, 31849
Gm46190 10 55124362 to 55124788 426 + pseudogene predicted gene, 46190
Tssr97612 10 55215179 to 55215181 2 - TSS region transcription start site region 97612
Gm3577 10 55550980 to 55571110 20130 protein coding gene predicted gene 3577
Tssr97613 10 55563560 to 55563563 3 - TSS region transcription start site region 97613
D10Mit110 10 55789660 to 55789808 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 110
Tssr97614 10 55992377 to 55992380 3 - TSS region transcription start site region 97614
Tbc1d32 10 56014293 to 56228689 214396 - protein coding gene TBC1 domain family, member 32
1700001I21Rik 10 56083829 to 56106375 22546 unclassified gene RIKEN cDNA 1700001I21 gene
Tssr93352 10 56083855 to 56083864 9 + TSS region transcription start site region 93352
Gm29794 10 56100635 to 56102003 1368 - pseudogene predicted gene, 29794
Tssr93353 10 56106883 to 56106937 54 + TSS region transcription start site region 93353
Msl3l2 10 56106917 to 56116880 9963 + protein coding gene MSL3 like 2
Tssr93354 10 56106945 to 56106959 14 + TSS region transcription start site region 93354
Cpgi1547 10 56114921 to 56115962 1041 CpG island CpG island 1547
Tssr93355 10 56114950 to 56114961 11 + TSS region transcription start site region 93355
Tssr93356 10 56115322 to 56115384 62 + TSS region transcription start site region 93356
Tssr93357 10 56115392 to 56115423 31 + TSS region transcription start site region 93357
Tssr97615 10 56115532 to 56115538 6 - TSS region transcription start site region 97615
Tssr97616 10 56115539 to 56115547 8 - TSS region transcription start site region 97616
Tssr97617 10 56115553 to 56115565 12 - TSS region transcription start site region 97617
D10Ertd533e 10 56118598 to 56118821 223 DNA segment DNA segment, Chr 10, ERATO Doi 533, expressed
Tssr97618 10 56132608 to 56132612 4 - TSS region transcription start site region 97618
D10Mit5 10 56146523 to 56146716 193 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 5
D10Mit257 10 56155040 to 56155127 87 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 257
D10Mit257.1 10 56155103 to 56155324 221 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 257.1
Tssr93358 10 56224980 to 56224984 4 + TSS region transcription start site region 93358
Cpgi1548 10 56228509 to 56229076 567 CpG island CpG island 1548
Tssr97619 10 56228636 to 56228695 59 - TSS region transcription start site region 97619
Rps8-ps1 10 56354451 to 56355074 623 - pseudogene ribosomal protein S8, pseudogene 1
Tssr97620 10 56355098 to 56355100 2 - TSS region transcription start site region 97620
Gja1 10 56377300 to 56390419 13119 + protein coding gene gap junction protein, alpha 1
Tssr93359 10 56377323 to 56377338 15 + TSS region transcription start site region 93359
Tssr93360 10 56377413 to 56377424 11 + TSS region transcription start site region 93360
Tssr93361 10 56377436 to 56377455 19 + TSS region transcription start site region 93361
Cpgi1549 10 56378610 to 56379220 610 CpG island CpG island 1549
Tssr97621 10 56378966 to 56378972 6 - TSS region transcription start site region 97621
Tssr93362 10 56379158 to 56379189 31 + TSS region transcription start site region 93362
Tssr93363 10 56380457 to 56380462 5 + TSS region transcription start site region 93363
Tssr93364 10 56386311 to 56386314 3 + TSS region transcription start site region 93364
D10Mit88 10 56386864 to 56387000 136 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 88
Tssr93365 10 56387520 to 56387524 4 + TSS region transcription start site region 93365
Tssr3195 10 56387678 to 56387698 20 + TSS region transcription start site region 3195
Tssr93366 10 56387879 to 56387890 11 + TSS region transcription start site region 93366
Tssr93367 10 56388094 to 56388143 49 + TSS region transcription start site region 93367
Cpgi1550 10 56388257 to 56388669 412 CpG island CpG island 1550
Tssr93368 10 56388265 to 56388294 29 + TSS region transcription start site region 93368
Tssr93369 10 56388354 to 56388363 9 + TSS region transcription start site region 93369
Tssr93370 10 56388399 to 56388408 9 + TSS region transcription start site region 93370
Tssr3196 10 56388509 to 56388529 20 + TSS region transcription start site region 3196
Tssr3197 10 56388856 to 56388873 17 + TSS region transcription start site region 3197
Tssr93371 10 56388978 to 56388996 18 + TSS region transcription start site region 93371
Tssr3198 10 56389015 to 56389025 10 + TSS region transcription start site region 3198
Tssr3199 10 56389074 to 56389079 5 + TSS region transcription start site region 3199
Tssr3200 10 56389139 to 56389158 19 + TSS region transcription start site region 3200
Tssr3201 10 56389231 to 56389263 32 + TSS region transcription start site region 3201
Tssr3202 10 56389331 to 56389376 45 + TSS region transcription start site region 3202
Tssr3203 10 56389392 to 56389418 26 + TSS region transcription start site region 3203
Tssr93372 10 56389465 to 56389479 14 + TSS region transcription start site region 93372
Tssr97622 10 56389550 to 56389580 30 - TSS region transcription start site region 97622
Tssr3204 10 56389696 to 56389715 19 + TSS region transcription start site region 3204
Tssr93373 10 56389790 to 56389798 8 + TSS region transcription start site region 93373
Gm36460 10 56395138 to 56399289 4151 + lncRNA gene predicted gene, 36460
Gm36517 10 56417339 to 56418001 662 - lncRNA gene predicted gene, 36517
Gm36595 10 56431507 to 56475415 43908 + lincRNA gene predicted gene, 36595
4930452L12Rik 10 56436354 to 56437603 1249 - lincRNA gene RIKEN cDNA 4930452L12 gene
Gm9118 10 56497341 to 56498094 753 + pseudogene predicted gene 9118
Tssr93374 10 56504495 to 56504520 25 + TSS region transcription start site region 93374
1700066D14Rik 10 56504500 to 56505286 786 unclassified gene RIKEN cDNA 1700066D14 gene
Tssr93375 10 56504521 to 56504535 14 + TSS region transcription start site region 93375
Tssr93376 10 56504550 to 56504559 9 + TSS region transcription start site region 93376
Cpgi1551 10 56504550 to 56504873 323 CpG island CpG island 1551
Tssr93377 10 56556087 to 56556091 4 + TSS region transcription start site region 93377
Tssr93378 10 56599427 to 56599438 11 + TSS region transcription start site region 93378
Cfq11 10 56604060 to 61105062 4501002 QTL conditioned fear QTL 11
Tssr93379 10 56655925 to 56655938 13 + TSS region transcription start site region 93379
Gm9795 10 56656194 to 56656886 692 + pseudogene predicted pseudogene 9795
D10Mit59 10 56791275 to 56791437 162 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 59
Tssr93380 10 56795680 to 56795690 10 + TSS region transcription start site region 93380
Gm31931 10 56829086 to 56829307 221 - pseudogene predicted gene, 31931