Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:52877110-54317119

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xiaf3 10 11642896 to 53772211 42129315 heritable phenotypic marker X inactivation autosomal factor 3
fsq 10 43656132 to 53772211 10116079 heritable phenotypic marker flying squirrel
Slc35f1 10 52690533 to 53111622 421089 + protein coding gene solute carrier family 35, member F1
Gm25664 10 52905638 to 52905744 106 + snRNA gene predicted gene, 25664
Gm47622 10 53102543 to 53104953 2410 + sense intronic lncRNA gene predicted gene, 47622
Gm40649 10 53181165 to 53207139 25974 + lincRNA gene predicted gene, 40649
Gm47637 10 53203022 to 53204315 1293 - unclassified gene predicted gene, 47637
Gm36173 10 53235189 to 53260736 25547 + lincRNA gene predicted gene, 36173
Cep85l 10 53276799 to 53379851 103052 - protein coding gene centrosomal protein 85-like
Tssr93315 10 53280256 to 53280263 7 + TSS region transcription start site region 93315
Tssr93316 10 53280264 to 53280271 7 + TSS region transcription start site region 93316
Tssr93317 10 53280275 to 53280292 17 + TSS region transcription start site region 93317
Gm19395 10 53280281 to 53283686 3405 + antisense lncRNA gene predicted gene, 19395
Cpgi1541 10 53299131 to 53299337 206 CpG island CpG island 1541
Gm17823 10 53299137 to 53300142 1005 - pseudogene predicted gene, 17823
Tssr97580 10 53337317 to 53337330 13 - TSS region transcription start site region 97580
Tssr93318 10 53337350 to 53337381 31 + TSS region transcription start site region 93318
Pln 10 53337686 to 53345999 8313 + protein coding gene phospholamban
Tssr93319 10 53337698 to 53337724 26 + TSS region transcription start site region 93319
Tssr93320 10 53337726 to 53337758 32 + TSS region transcription start site region 93320
Gm47644 10 53337753 to 53345085 7332 - sense intronic lncRNA gene predicted gene, 47644
Tssr93321 10 53342438 to 53342443 5 + TSS region transcription start site region 93321
Tssr93322 10 53343871 to 53343881 10 + TSS region transcription start site region 93322
Tssr93323 10 53344083 to 53344097 14 + TSS region transcription start site region 93323
Tssr93324 10 53344203 to 53344215 12 + TSS region transcription start site region 93324
Tssr93325 10 53344951 to 53344971 20 + TSS region transcription start site region 93325
Tssr93326 10 53344990 to 53345007 17 + TSS region transcription start site region 93326
Tssr97581 10 53348509 to 53348517 8 - TSS region transcription start site region 97581
Tssr97582 10 53348629 to 53348638 9 - TSS region transcription start site region 97582
Tssr97583 10 53349781 to 53349810 29 - TSS region transcription start site region 97583
Tssr97584 10 53349815 to 53349827 12 - TSS region transcription start site region 97584
Tssr97585 10 53361003 to 53361006 3 - TSS region transcription start site region 97585
Tssr97586 10 53371821 to 53371823 2 - TSS region transcription start site region 97586
Tssr97587 10 53376130 to 53376164 34 - TSS region transcription start site region 97587
Cpgi1542 10 53379112 to 53380144 1032 CpG island CpG island 1542
Gm47641 10 53379452 to 53381386 1934 + unclassified gene predicted gene, 47641
Tssr97588 10 53379816 to 53379858 42 - TSS region transcription start site region 97588
Tssr97589 10 53379864 to 53379899 35 - TSS region transcription start site region 97589
Gm46225 10 53380375 to 53398748 18373 - lncRNA gene predicted gene, 46225
Tssr97590 10 53398703 to 53398728 25 - TSS region transcription start site region 97590
Tssr97591 10 53398745 to 53398756 11 - TSS region transcription start site region 97591
Gm36229 10 53409882 to 53424272 14390 + lincRNA gene predicted gene, 36229
D10Mit219 10 53440706 to 53440830 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 219
Tssr93327 10 53467940 to 53467946 6 + TSS region transcription start site region 93327
Tssr93328 10 53471523 to 53471529 6 + TSS region transcription start site region 93328
Tmem229b-ps 10 53474964 to 53475469 505 + pseudogene transmembrane protein 229B, pseudogene
Gm36280 10 53488240 to 53510407 22167 + lncRNA gene predicted gene, 36280
Tssr93329 10 53488270 to 53488278 8 + TSS region transcription start site region 93329
Gm20597 10 53498443 to 53518989 20546 - lincRNA gene predicted gene, 20597
Gm40650 10 53511143 to 53514526 3383 + lincRNA gene predicted gene, 40650
Tssr97592 10 53519700 to 53519718 18 - TSS region transcription start site region 97592
Tssr93330 10 53525975 to 53525980 5 + TSS region transcription start site region 93330
Gm47722 10 53529657 to 53530185 528 - pseudogene predicted gene, 47722
Mcm9 10 53536315 to 53630439 94124 - protein coding gene minichromosome maintenance 9 homologous recombination repair factor
Gm47738 10 53569669 to 53571582 1913 + antisense lncRNA gene predicted gene, 47738
Gm47739 10 53570625 to 53575756 5131 - sense intronic lncRNA gene predicted gene, 47739
Tssr93331 10 53580425 to 53580430 5 + TSS region transcription start site region 93331
Gm47737 10 53592817 to 53593124 307 - unclassified gene predicted gene, 47737
Tssr93332 10 53595911 to 53595914 3 + TSS region transcription start site region 93332
Cpgi1543 10 53596393 to 53597998 1605 CpG island CpG island 1543
Del(10Mcm9-Asf1a)1Byg 10 53596600 to 53620013 23413 chromosomal deletion gene trap XE518 induced deletion 1, BayGenomics
Tssr93333 10 53596795 to 53596808 13 + TSS region transcription start site region 93333
Tssr93334 10 53596815 to 53596826 11 + TSS region transcription start site region 93334
Tssr93335 10 53596844 to 53596853 9 + TSS region transcription start site region 93335
Tssr93336 10 53596886 to 53596898 12 + TSS region transcription start site region 93336
Tssr93337 10 53596923 to 53596934 11 + TSS region transcription start site region 93337
Tssr93338 10 53596936 to 53597004 68 + TSS region transcription start site region 93338
Asf1a 10 53596961 to 53609225 12264 + protein coding gene anti-silencing function 1A histone chaperone
Tssr93339 10 53597014 to 53597021 7 + TSS region transcription start site region 93339
Tssr93340 10 53597060 to 53597075 15 + TSS region transcription start site region 93340
Tssr93341 10 53597110 to 53597119 9 + TSS region transcription start site region 93341
Gm3902 10 53597378 to 53598402 1024 + unclassified gene predicted gene 3902
4930466K18Rik 10 53614369 to 53615274 905 + unclassified gene RIKEN cDNA 4930466K18 gene
Cpgi1544 10 53629275 to 53630321 1046 CpG island CpG island 1544
Tssr97593 10 53629942 to 53629981 39 - TSS region transcription start site region 97593
Tssr97594 10 53629987 to 53630022 35 - TSS region transcription start site region 97594
Tssr97595 10 53631689 to 53631690 1 - TSS region transcription start site region 97595
Fam184a 10 53633145 to 53751123 117978 - protein coding gene family with sequence similarity 184, member A
B930046M08Rik 10 53635456 to 53660216 24760 unclassified non-coding RNA gene RIKEN cDNA B930046M08 gene
Tssr93342 10 53635461 to 53635476 15 + TSS region transcription start site region 93342
Cpgi1545 10 53750412 to 53751662 1250 CpG island CpG island 1545
Tssr97596 10 53751093 to 53751164 71 - TSS region transcription start site region 97596
Tssr97597 10 53751178 to 53751191 13 - TSS region transcription start site region 97597
Tssr97598 10 53751194 to 53751266 72 - TSS region transcription start site region 97598
D10Mit138 10 53772094 to 53772211 117 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 138
nmf172 10 53772094 to 67012618 13240524 heritable phenotypic marker neuroscience mutagenesis facility, 172
nmf347 10 53772094 to 67012618 13240524 heritable phenotypic marker neuroscience mutagenesis facility, 347
Gm47915 10 53798024 to 53803529 5505 - lincRNA gene predicted gene, 47915
Man1a 10 53904785 to 54076547 171762 - protein coding gene mannosidase 1, alpha
Tssr97599 10 53906421 to 53906438 17 - TSS region transcription start site region 97599
Tssr97600 10 53913672 to 53913677 5 - TSS region transcription start site region 97600
Tssr97601 10 53932832 to 53932833 1 - TSS region transcription start site region 97601
9530009G21Rik 10 53946245 to 53953024 6779 unclassified gene RIKEN cDNA 9530009G21 gene
Tssr97602 10 53957371 to 53957380 9 - TSS region transcription start site region 97602
Tssr93343 10 53959281 to 53959319 38 + TSS region transcription start site region 93343
Tssr97603 10 53993769 to 53993776 7 - TSS region transcription start site region 97603
Tssr97604 10 53993784 to 53993804 20 - TSS region transcription start site region 97604
Tssr97605 10 53993809 to 53993820 11 - TSS region transcription start site region 97605
A030011A13Rik 10 54007006 to 54010451 3445 unclassified gene RIKEN cDNA A030011A13 gene
Tssr97606 10 54014545 to 54014556 11 - TSS region transcription start site region 97606
Tssr97607 10 54061703 to 54061722 19 - TSS region transcription start site region 97607
Tssr97608 10 54061822 to 54061839 17 - TSS region transcription start site region 97608
Gm47917 10 54063811 to 54065069 1258 + antisense lncRNA gene predicted gene, 47917
Tssr93344 10 54074020 to 54074027 7 + TSS region transcription start site region 93344
Cpgi1546 10 54074137 to 54076352 2215 CpG island CpG island 1546
Tssr93345 10 54074509 to 54074524 15 + TSS region transcription start site region 93345
Tssr93346 10 54074537 to 54074572 35 + TSS region transcription start site region 93346
Tssr97609 10 54075702 to 54075718 16 - TSS region transcription start site region 97609
Tssr97610 10 54075730 to 54075751 21 - TSS region transcription start site region 97610
Gm16998 10 54075922 to 54081081 5159 + bidirectional promoter lncRNA gene predicted gene, 16998
Tssr97611 10 54076581 to 54076620 39 - TSS region transcription start site region 97611
Tssr93347 10 54118056 to 54118071 15 + TSS region transcription start site region 93347
Tssr93348 10 54118073 to 54118084 11 + TSS region transcription start site region 93348
Tssr93349 10 54118114 to 54118126 12 + TSS region transcription start site region 93349
Tssr93350 10 54118133 to 54118151 18 + TSS region transcription start site region 93350
Tssr3193 10 54119447 to 54119464 17 + TSS region transcription start site region 3193
Tssr3194 10 54160704 to 54160708 4 - TSS region transcription start site region 3194
Gm40651 10 54165171 to 54228819 63648 + lncRNA gene predicted gene, 40651
Gm47967 10 54211734 to 54212823 1089 + pseudogene predicted gene, 47967
Gm47968 10 54212871 to 54216723 3852 + pseudogene predicted gene, 47968
Gm26177 10 54311225 to 54311331 106 - snRNA gene predicted gene, 26177