Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:52290638-53520744

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dcbld1 10 52233619 to 52321378 87759 + protein coding gene discoidin, CUB and LCCL domain containing 1
Cpgi1534 10 52319404 to 52320047 643 CpG island CpG island 1534
Tssr93298 10 52319873 to 52319884 11 + TSS region transcription start site region 93298
Gopc 10 52337024 to 52382124 45100 - protein coding gene golgi associated PDZ and coiled-coil motif containing
Gm6627 10 52341272 to 52343657 2385 - pseudogene predicted gene 6627
Tssr97575 10 52343659 to 52343674 15 - TSS region transcription start site region 97575
Gm26741 10 52358767 to 52358853 86 + protein coding gene predicted gene, 26741
Gm47580 10 52379196 to 52381226 2030 - unclassified gene predicted gene, 47580
Cpgi1535 10 52381338 to 52382531 1193 CpG island CpG island 1535
Tssr93299 10 52381493 to 52381499 6 + TSS region transcription start site region 93299
Tssr97576 10 52381921 to 52381940 19 - TSS region transcription start site region 97576
Tssr97577 10 52381956 to 52381978 22 - TSS region transcription start site region 97577
Tssr97578 10 52382074 to 52382142 68 - TSS region transcription start site region 97578
Rps19-ps10 10 52384659 to 52385093 434 - pseudogene ribosomal protein S19, pseudogene 10
Tssr93300 10 52388963 to 52388977 14 + TSS region transcription start site region 93300
Nepn 10 52388972 to 52404625 15653 + protein coding gene nephrocan
Tssr93301 10 52391606 to 52391610 4 + TSS region transcription start site region 93301
Cpgi1536 10 52417130 to 52418398 1268 CpG island CpG island 1536
Tssr93302 10 52417532 to 52417580 48 + TSS region transcription start site region 93302
Nus1 10 52417547 to 52440183 22636 + protein coding gene NUS1 dehydrodolichyl diphosphate synthase subunit
Tssr93303 10 52417589 to 52417611 22 + TSS region transcription start site region 93303
Tssr93304 10 52417701 to 52417712 11 + TSS region transcription start site region 93304
Tssr93305 10 52417871 to 52417918 47 + TSS region transcription start site region 93305
Tssr93306 10 52418031 to 52418042 11 + TSS region transcription start site region 93306
Tssr97579 10 52419482 to 52419519 37 - TSS region transcription start site region 97579
Tssr93307 10 52423761 to 52423766 5 + TSS region transcription start site region 93307
Gm47608 10 52450369 to 52452515 2146 + unclassified gene predicted gene, 47608
Gm47607 10 52451409 to 52453591 2182 - unclassified gene predicted gene, 47607
Gm47609 10 52514399 to 52514777 378 - pseudogene predicted gene, 47609
Gm47610 10 52518293 to 52518482 189 - pseudogene predicted gene, 47610
Gm47611 10 52523022 to 52526859 3837 + pseudogene predicted gene, 47611
Gm47612 10 52528519 to 52529023 504 + pseudogene predicted gene, 47612
Zfa-ps 10 52542320 to 52545739 3419 - pseudogene zinc finger protein, autosomal, pseudogene
Cpgi1537 10 52545646 to 52545958 312 CpG island CpG island 1537
Cpgi1538 10 52593972 to 52594229 257 CpG island CpG island 1538
Gm36065 10 52594442 to 52596645 2203 + lincRNA gene predicted gene, 36065
Tssr93308 10 52686844 to 52686846 2 + TSS region transcription start site region 93308
Cpgi1539 10 52690245 to 52691659 1414 CpG island CpG island 1539
Tssr93309 10 52690496 to 52690554 58 + TSS region transcription start site region 93309
Slc35f1 10 52690533 to 53111622 421089 + protein coding gene solute carrier family 35, member F1
Tssr93310 10 52690574 to 52690586 12 + TSS region transcription start site region 93310
Tssr93311 10 52690595 to 52690602 7 + TSS region transcription start site region 93311
Gm47624 10 52693838 to 52697673 3835 + unclassified gene predicted gene, 47624
Cpgi1540 10 52704614 to 52704987 373 CpG island CpG island 1540
Tssr93312 10 52760935 to 52760951 16 + TSS region transcription start site region 93312
Gm36123 10 52768755 to 52772003 3248 - lncRNA gene predicted gene, 36123
Tssr93313 10 52800218 to 52800221 3 + TSS region transcription start site region 93313
Gm47623 10 52801493 to 52801700 207 + unclassified gene predicted gene, 47623
Gm40647 10 52804356 to 52815822 11466 + lncRNA gene predicted gene, 40647
Tssr93314 10 52823763 to 52823767 4 + TSS region transcription start site region 93314
Gm47621 10 52824305 to 52826842 2537 + unclassified gene predicted gene, 47621
D10Mit128 10 52873482 to 52873642 160 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 128
Gm25664 10 52905638 to 52905744 106 + snRNA gene predicted gene, 25664
Gm47622 10 53102543 to 53104953 2410 + sense intronic lncRNA gene predicted gene, 47622
Gm40649 10 53181165 to 53207139 25974 + lincRNA gene predicted gene, 40649
Gm47637 10 53203022 to 53204315 1293 - unclassified gene predicted gene, 47637
Gm36173 10 53235189 to 53260736 25547 + lincRNA gene predicted gene, 36173
Cep85l 10 53276799 to 53379851 103052 - protein coding gene centrosomal protein 85-like
Tssr93315 10 53280256 to 53280263 7 + TSS region transcription start site region 93315
Tssr93316 10 53280264 to 53280271 7 + TSS region transcription start site region 93316
Tssr93317 10 53280275 to 53280292 17 + TSS region transcription start site region 93317
Gm19395 10 53280281 to 53283686 3405 + antisense lncRNA gene predicted gene, 19395
Cpgi1541 10 53299131 to 53299337 206 CpG island CpG island 1541
Gm17823 10 53299137 to 53300142 1005 - pseudogene predicted gene, 17823
Tssr97580 10 53337317 to 53337330 13 - TSS region transcription start site region 97580
Tssr93318 10 53337350 to 53337381 31 + TSS region transcription start site region 93318
Pln 10 53337686 to 53345999 8313 + protein coding gene phospholamban
Tssr93319 10 53337698 to 53337724 26 + TSS region transcription start site region 93319
Tssr93320 10 53337726 to 53337758 32 + TSS region transcription start site region 93320
Gm47644 10 53337753 to 53345085 7332 - sense intronic lncRNA gene predicted gene, 47644
Tssr93321 10 53342438 to 53342443 5 + TSS region transcription start site region 93321
Tssr93322 10 53343871 to 53343881 10 + TSS region transcription start site region 93322
Tssr93323 10 53344083 to 53344097 14 + TSS region transcription start site region 93323
Tssr93324 10 53344203 to 53344215 12 + TSS region transcription start site region 93324
Tssr93325 10 53344951 to 53344971 20 + TSS region transcription start site region 93325
Tssr93326 10 53344990 to 53345007 17 + TSS region transcription start site region 93326
Tssr97581 10 53348509 to 53348517 8 - TSS region transcription start site region 97581
Tssr97582 10 53348629 to 53348638 9 - TSS region transcription start site region 97582
Tssr97583 10 53349781 to 53349810 29 - TSS region transcription start site region 97583
Tssr97584 10 53349815 to 53349827 12 - TSS region transcription start site region 97584
Tssr97585 10 53361003 to 53361006 3 - TSS region transcription start site region 97585
Tssr97586 10 53371821 to 53371823 2 - TSS region transcription start site region 97586
Tssr97587 10 53376130 to 53376164 34 - TSS region transcription start site region 97587
Cpgi1542 10 53379112 to 53380144 1032 CpG island CpG island 1542
Gm47641 10 53379452 to 53381386 1934 + unclassified gene predicted gene, 47641
Tssr97588 10 53379816 to 53379858 42 - TSS region transcription start site region 97588
Tssr97589 10 53379864 to 53379899 35 - TSS region transcription start site region 97589
Gm46225 10 53380375 to 53398748 18373 - lncRNA gene predicted gene, 46225
Tssr97590 10 53398703 to 53398728 25 - TSS region transcription start site region 97590
Tssr97591 10 53398745 to 53398756 11 - TSS region transcription start site region 97591
Gm36229 10 53409882 to 53424272 14390 + lincRNA gene predicted gene, 36229
D10Mit219 10 53440706 to 53440830 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 219
Tssr93327 10 53467940 to 53467946 6 + TSS region transcription start site region 93327
Tssr93328 10 53471523 to 53471529 6 + TSS region transcription start site region 93328
Tmem229b-ps 10 53474964 to 53475469 505 + pseudogene transmembrane protein 229B, pseudogene
Gm36280 10 53488240 to 53510407 22167 + lncRNA gene predicted gene, 36280
Tssr93329 10 53488270 to 53488278 8 + TSS region transcription start site region 93329
Gm20597 10 53498443 to 53518989 20546 - lincRNA gene predicted gene, 20597
Gm40650 10 53511143 to 53514526 3383 + lincRNA gene predicted gene, 40650
Tssr97592 10 53519700 to 53519718 18 - TSS region transcription start site region 97592